Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g100340.3.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118JRX1_CYNCS)
Sequence

ATGAACAGAGGGAGCCGAGAGGTTGAGCGGAGGATTCTCCGGCTGCTCCACGGCCAAAAA
ACTCGAACCCAACTAACTCAAATCCATGCCCACATCCTTCGCCACCACCTTCACCACTCT
AACCAGCTCATCTCCCACTTCATTTCCATCTGCGGTTCTCTTAACAGAATGCGTTATGCA
TCCATCATATTTCAACACTTCCAGAACCCCAGCATCTTCCTCTTCAATTCCATGATCAAA
GGTTACTCTTTATGTGGCCCTTATCAAAATTCTGTCGTCTTCTTTTCCACTATGAAACGA
CGTGGCATTTGGCCTGATGAGTTCACTTTCGCCCCTTTGCTCAAGGCTTGTGCTAATCTT
GTGGATTTGGAACTGGGGCAAGGAGTGCATAAGCATGTTCTTGCACTTGGGTTTGGCAGA
TTTGGGTCGATAAGGATTGGGATTGTTGAGCTGTACTCTGGGTGCGGGAGGATGACGGAT
GCGAAGAAGGTGTTTGATGAAATGCCTCACAGAGATGTGATTATTTGGAATTTGATGGTT
AAGGGTTATTCTCAAAGTGGAAATGTGGATATGGGACTTGGGCTGTTTAGGCAAATGGGT
GAGAGGACTGTTGTTTCTTGGAATTTGATGATTTCGTTGTTAGCGCAAAATGGGAGGGAG
AAGGAGGCTCTGGCACTTTTCCATGAGATGAAGAATGGTGGTTTTGAGCCTGATGAAGCT
ACTGTTGTTACTGTGTTGCCTGTTTGTGCTCAATTAGGAGAACTTGATTTGGGAAGGTGG
ATTCATTCTTATGCTAAGTCTGAAGGTCTCTATCCCAATCTCGTATCCGTTGGCAATGCA
TTGGTTGATTTCTTTGGAAAATCTGGTGATTTGGAGACTGCAATTACTATATTCAACGAC
ATGCCTAGAAAAAATGTAGTTTCTTGGAATGCTGCGATATCAAACTGTGCTTTTAACGGG
AAGGGTGAATTGGGTGTACAATTGTTTGATAAGATGTTAGATGAAGGTGTGAGACCTAAC
GATTCGACTTATGTGGGTGCTTTAGCATGTTGTGCACATGCAGGTTTGGTCCACAGAGGG
GGAGATTTGTTTGATTCTATGATTGCTAATCATGGTATAGAACCAACAATCGAGCATTAT
GGATGCATGGTTGATCTTCTAGGTCGTGGTGGCTGTCTAAAGGAGGCTCATAAACTAGTG
GAAACCATGACAATGGAACCAAATGCAGCTATATGGGGTGCATTGGTTAGTGCTTGTCGC
ACTCATGGTGAAATGGAGTTGGCTGAATACGCGCTTAAGGAACTTATTAAACTTGAACCT
TGGAATTCGGGTAACTATGTATTGTTATCCAATATTTATGCTGATAGAGGAAAATGGGAA
GACGTTGAAAAGGTGAGAGTATTGATGAGCGGAAATAGCATTAAAAAAGCGCCAGGACAG
AGCATAATTGTTTGA

Peptide Sequence

PEP ID

Solyc01g100340.3.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118JRX1_CYNCS)
Sequence

MNRGSREVERRILRLLHGQKTRTQLTQIHAHILRHHLHHSNQLISHFISICGSLNRMRYA
SIIFQHFQNPSIFLFNSMIKGYSLCGPYQNSVVFFSTMKRRGIWPDEFTFAPLLKACANL
VDLELGQGVHKHVLALGFGRFGSIRIGIVELYSGCGRMTDAKKVFDEMPHRDVIIWNLMV
KGYSQSGNVDMGLGLFRQMGERTVVSWNLMISLLAQNGREKEALALFHEMKNGGFEPDEA
TVVTVLPVCAQLGELDLGRWIHSYAKSEGLYPNLVSVGNALVDFFGKSGDLETAITIFND
MPRKNVVSWNAAISNCAFNGKGELGVQLFDKMLDEGVRPNDSTYVGALACCAHAGLVHRG
GDLFDSMIANHGIEPTIEHYGCMVDLLGRGGCLKEAHKLVETMTMEPNAAIWGALVSACR
THGEMELAEYALKELIKLEPWNSGNYVLLSNIYADRGKWEDVEKVRVLMSGNSIKKAPGQ
SIIV*

Transcript Sequence

Transcript ID

Solyc01g100340.3.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118JRX1_CYNCS)
Sequence

ATGAACAGAGGGAGCCGAGAGGTTGAGCGGAGGATTCTCCGGCTGCTCCACGGCCAAAAA
ACTCGAACCCAACTAACTCAAATCCATGCCCACATCCTTCGCCACCACCTTCACCACTCT
AACCAGCTCATCTCCCACTTCATTTCCATCTGCGGTTCTCTTAACAGAATGCGTTATGCA
TCCATCATATTTCAACACTTCCAGAACCCCAGCATCTTCCTCTTCAATTCCATGATCAAA
GGTTACTCTTTATGTGGCCCTTATCAAAATTCTGTCGTCTTCTTTTCCACTATGAAACGA
CGTGGCATTTGGCCTGATGAGTTCACTTTCGCCCCTTTGCTCAAGGCTTGTGCTAATCTT
GTGGATTTGGAACTGGGGCAAGGAGTGCATAAGCATGTTCTTGCACTTGGGTTTGGCAGA
TTTGGGTCGATAAGGATTGGGATTGTTGAGCTGTACTCTGGGTGCGGGAGGATGACGGAT
GCGAAGAAGGTGTTTGATGAAATGCCTCACAGAGATGTGATTATTTGGAATTTGATGGTT
AAGGGTTATTCTCAAAGTGGAAATGTGGATATGGGACTTGGGCTGTTTAGGCAAATGGGT
GAGAGGACTGTTGTTTCTTGGAATTTGATGATTTCGTTGTTAGCGCAAAATGGGAGGGAG
AAGGAGGCTCTGGCACTTTTCCATGAGATGAAGAATGGTGGTTTTGAGCCTGATGAAGCT
ACTGTTGTTACTGTGTTGCCTGTTTGTGCTCAATTAGGAGAACTTGATTTGGGAAGGTGG
ATTCATTCTTATGCTAAGTCTGAAGGTCTCTATCCCAATCTCGTATCCGTTGGCAATGCA
TTGGTTGATTTCTTTGGAAAATCTGGTGATTTGGAGACTGCAATTACTATATTCAACGAC
ATGCCTAGAAAAAATGTAGTTTCTTGGAATGCTGCGATATCAAACTGTGCTTTTAACGGG
AAGGGTGAATTGGGTGTACAATTGTTTGATAAGATGTTAGATGAAGGTGTGAGACCTAAC
GATTCGACTTATGTGGGTGCTTTAGCATGTTGTGCACATGCAGGTTTGGTCCACAGAGGG
GGAGATTTGTTTGATTCTATGATTGCTAATCATGGTATAGAACCAACAATCGAGCATTAT
GGATGCATGGTTGATCTTCTAGGTCGTGGTGGCTGTCTAAAGGAGGCTCATAAACTAGTG
GAAACCATGACAATGGAACCAAATGCAGCTATATGGGGTGCATTGGTTAGTGCTTGTCGC
ACTCATGGTGAAATGGAGTTGGCTGAATACGCGCTTAAGGAACTTATTAAACTTGAACCT
TGGAATTCGGGTAACTATGTATTGTTATCCAATATTTATGCTGATAGAGGAAAATGGGAA
GACGTTGAAAAGGTGAGAGTATTGATGAGCGGAAATAGCATTAAAAAAGCGCCAGGACAG
AGCATAATTGTTTGA