Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g098940.3.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4B0T1_SOLLC)
Sequence

ATGCGGAAGCATTTCCTCACAATTTCTCTCATTCTTTTTTCTTTAGCTCTTCCGATTTTC
AGCGAATTAAATCAATCAGCATGCAAATCCTCACTTTACCCAAAACTTTGCCGCTCCCTT
CTCTCTGCATTTCAGCATTCTCCTTCTAACCCAAATGACGACTACAGCAAATTCTCCGTA
AAGCAATGCCAGAAAAAAGCCAACAAATTATCCAGTTTAATCGCGCATTTCCTCTCAACG
CAGAAACAGAGATCGTTATTCGTTAATCCTAAAGAGATTAGCGCATTGACCGATTGCCAG
CAGCTCACTCAACTCACAGTCGATTACTTAAATTCAATTTCGGCCGAGTTGAAAAAAGCT
GATGTCTCCACTACTTCAGAGGATTTAGTTGGAAAAATCCATACATTGCTTAGTGCTGTG
GTGACGAATCAGCAGACGTGTTATGAGGGACTGAAAGAAGCTGGTAGCAGTATGGTGGAT
GAACTATTGGCGCCGCTGAGCAATGCCGGAGAAATCTACAGTGTGTCTCTTGGATTGGTG
ACGCATGCATTGGAGCGCGTTCGGAAATCCAGAAAGAGCGGTAGATTGTTGGCGGAACAG
GGAGGAGTGATGGAGGAAGAGTGGGCACGCCGTTCGAGATTCATGGCTTCCAAGGTTAAA
CAAGCACTGGAGAGGTCTCATCAAAGGGATGGAAGGATTCTTGACGAGTTAGTAGAAAAT
GGAGTTCACATTAAGGAAACTGTAACAGTTAGCCCATATGGTGGATGCAACTTTACATCG
ATAGGAGAAGCAATTGCATTTGCACCTAATAACTCAATGATTGACGATGGCTATTTTCTC
ATCTACGCAAAGGAAGGATACTACGAGGAGTATGTTGTTGTGGCCAAGAACAAGAAGAAC
ATTATGTTGATTGGAGAAGGAGTTGATCGCACTGTGATTGCTGGAAATCGAAGTGTCATA
GATGGCTGGACAACCTACAATTCAGCAACCTTTGCTGTTTCAGGGGAGCGGTTTGTAGCT
GTGAACATAACATTCAAGAATGTAGCTGGTCCTTGGAAACACCAAGCTGTAGCTCTAAGG
AACAATGCAGACCTTTCCACGTTCTACAGATGTTGTTTTGAGGGCTATCAAGACACGTTA
TACGTGCACTCTTTAAGACAATTCTATAGAGACTGCGATATTTATGGTACTGTTGACTTC
ATATTTGGCAATGCAGCTGCAATTTTCCAAAATTGCAATCTTTTTGCTAGGAAGCCAATG
CCAGACCAAAAGAACATCTTCACAGCACAAGGCCGGAGTGATCCCAACCAGAACACTGGC
ATTTCTATCCAGAATTGCACAATTCAAGCTGCCCCTGATTTGGCACAGGACCCGAATCTC
ACGTTGAGTTTTCTTGGCCGGCCTTGGCACAATTACTCAAGGACTGTTATCATGCAGTCC
TATTTAGGAGATGTGATCACGCCTGTTGGATGGTTAGAGTGGAACGGAACGTATGGACTA
GACACCCTTTATTATGGGGAGTTTGAGAATTATGGACCAGGGGCTAATACTACAATGAGA
GTACAATGGCCTGGTTATAGCTTAATGAATGCTTCACAAGCAATGAACTTTACTGTCTAT
AATTTCACTATGGGAGATACTTGGTTGCCTTACACAAATGTTCCTTTTTCTCAAGGACTG
TAG

Peptide Sequence

PEP ID

Solyc01g098940.3.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4B0T1_SOLLC)
Sequence

MRKHFLTISLILFSLALPIFSELNQSACKSSLYPKLCRSLLSAFQHSPSNPNDDYSKFSV
KQCQKKANKLSSLIAHFLSTQKQRSLFVNPKEISALTDCQQLTQLTVDYLNSISAELKKA
DVSTTSEDLVGKIHTLLSAVVTNQQTCYEGLKEAGSSMVDELLAPLSNAGEIYSVSLGLV
THALERVRKSRKSGRLLAEQGGVMEEEWARRSRFMASKVKQALERSHQRDGRILDELVEN
GVHIKETVTVSPYGGCNFTSIGEAIAFAPNNSMIDDGYFLIYAKEGYYEEYVVVAKNKKN
IMLIGEGVDRTVIAGNRSVIDGWTTYNSATFAVSGERFVAVNITFKNVAGPWKHQAVALR
NNADLSTFYRCCFEGYQDTLYVHSLRQFYRDCDIYGTVDFIFGNAAAIFQNCNLFARKPM
PDQKNIFTAQGRSDPNQNTGISIQNCTIQAAPDLAQDPNLTLSFLGRPWHNYSRTVIMQS
YLGDVITPVGWLEWNGTYGLDTLYYGEFENYGPGANTTMRVQWPGYSLMNASQAMNFTVY
NFTMGDTWLPYTNVPFSQGL*

Transcript Sequence

Transcript ID

Solyc01g098940.3.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4B0T1_SOLLC)
Sequence

CTAAATTTCGTAGTTAGTCAACCACTTTTTCCTTAACATGAAACAACGTAGAAGTTTTTT
TTTTTGCGCAAATGAGTGTGAACAAACCCGACGGTGGTTACAAGAGTAGTTACTACCGGC
TGCTCCAGCCGTCCGTTTGGTAATCACTTTCATTGTTAGGCATTTACTATTTACCATCAT
TTCTATCCATCCCTCTTCAACACTTCTTTTTTCTAATTCGTCTAAAATAAATAAGTAATA
CCTTCATACAAATTTTTTTAAAAAGAAAATCTAATTTTTATAATTAAAAATGTATGTAAT
ACACCAAAATATCAATATTGTGCTATAAATTCCATTATCAATCACACTCACCGAAAACAC
ATTAACCTTTCCTTGTTTCCACGTGATAACAAACAAAAATGCGGAAGCATTTCCTCACAA
TTTCTCTCATTCTTTTTTCTTTAGCTCTTCCGATTTTCAGCGAATTAAATCAATCAGCAT
GCAAATCCTCACTTTACCCAAAACTTTGCCGCTCCCTTCTCTCTGCATTTCAGCATTCTC
CTTCTAACCCAAATGACGACTACAGCAAATTCTCCGTAAAGCAATGCCAGAAAAAAGCCA
ACAAATTATCCAGTTTAATCGCGCATTTCCTCTCAACGCAGAAACAGAGATCGTTATTCG
TTAATCCTAAAGAGATTAGCGCATTGACCGATTGCCAGCAGCTCACTCAACTCACAGTCG
ATTACTTAAATTCAATTTCGGCCGAGTTGAAAAAAGCTGATGTCTCCACTACTTCAGAGG
ATTTAGTTGGAAAAATCCATACATTGCTTAGTGCTGTGGTGACGAATCAGCAGACGTGTT
ATGAGGGACTGAAAGAAGCTGGTAGCAGTATGGTGGATGAACTATTGGCGCCGCTGAGCA
ATGCCGGAGAAATCTACAGTGTGTCTCTTGGATTGGTGACGCATGCATTGGAGCGCGTTC
GGAAATCCAGAAAGAGCGGTAGATTGTTGGCGGAACAGGGAGGAGTGATGGAGGAAGAGT
GGGCACGCCGTTCGAGATTCATGGCTTCCAAGGTTAAACAAGCACTGGAGAGGTCTCATC
AAAGGGATGGAAGGATTCTTGACGAGTTAGTAGAAAATGGAGTTCACATTAAGGAAACTG
TAACAGTTAGCCCATATGGTGGATGCAACTTTACATCGATAGGAGAAGCAATTGCATTTG
CACCTAATAACTCAATGATTGACGATGGCTATTTTCTCATCTACGCAAAGGAAGGATACT
ACGAGGAGTATGTTGTTGTGGCCAAGAACAAGAAGAACATTATGTTGATTGGAGAAGGAG
TTGATCGCACTGTGATTGCTGGAAATCGAAGTGTCATAGATGGCTGGACAACCTACAATT
CAGCAACCTTTGCTGTTTCAGGGGAGCGGTTTGTAGCTGTGAACATAACATTCAAGAATG
TAGCTGGTCCTTGGAAACACCAAGCTGTAGCTCTAAGGAACAATGCAGACCTTTCCACGT
TCTACAGATGTTGTTTTGAGGGCTATCAAGACACGTTATACGTGCACTCTTTAAGACAAT
TCTATAGAGACTGCGATATTTATGGTACTGTTGACTTCATATTTGGCAATGCAGCTGCAA
TTTTCCAAAATTGCAATCTTTTTGCTAGGAAGCCAATGCCAGACCAAAAGAACATCTTCA
CAGCACAAGGCCGGAGTGATCCCAACCAGAACACTGGCATTTCTATCCAGAATTGCACAA
TTCAAGCTGCCCCTGATTTGGCACAGGACCCGAATCTCACGTTGAGTTTTCTTGGCCGGC
CTTGGCACAATTACTCAAGGACTGTTATCATGCAGTCCTATTTAGGAGATGTGATCACGC
CTGTTGGATGGTTAGAGTGGAACGGAACGTATGGACTAGACACCCTTTATTATGGGGAGT
TTGAGAATTATGGACCAGGGGCTAATACTACAATGAGAGTACAATGGCCTGGTTATAGCT
TAATGAATGCTTCACAAGCAATGAACTTTACTGTCTATAATTTCACTATGGGAGATACTT
GGTTGCCTTACACAAATGTTCCTTTTTCTCAAGGACTGTAGCTAAATCTGTATAAATCAG
ATAGTTTTGTCTACTTCAGTCACATTCTTTTCTTCAAATTTATTCTTTAACTTAGTACTA
AGAAGATGCTAGCTATAAGTACACAGAGTATCACTGATCACTTCTGCTCTAAAGGAATTG
ATGTAACATTTTCTTCTCTTTATAACATGACGTAGAATTGTTTCTACATCACTTTATTTT
ACATCCGTTCTTCTAAATAAGCTAGGAAATGTATTTGTATATGCTCAAAGAAAATGTCCA
TATATTCAATGATCTCAGAAAATTACCAAGAAA