Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g098820.3.1
CDS Infomation

Phototropic-responsive NPH3 family protein, putative (AHRD V3.3 *** A0A061FBG1_THECC)
Sequence

ATGGTGAAAGAAAATCCAGTAACTGGTGAATCTATATTTGTCGAAAAGAGAAATCACTGT
GTGATTTATCCAGCCAGTGGCAGTATGGTGGCAGAGTCTGTGGAAAGAAGAAACAAGAAC
TGGTATGTCCAAACAAAAATACCAAGTGATTTGATAGTAGAAATTAGAGACCAAAGCTTC
CACTTGCATAAGCTTTCCGTGGTTTCAAGAAGTGGATACCTTAATAGATTGGTATTCGAA
AGGAATGGAAACAACTATACTAGAGTTCAGATTGACACAATACCTGGTGGCGCTAAAATC
TTTGAGTTAGTAGTGAAGTTTTGCTATGGACTGAAGATCAAAGCTACAGCTTCAAATGTT
GCCCCACTGTATTGTGCTGCTCATTTCTTGGAAATGAATGATGAACTTCACCAAGGAAAT
CTAATTTCTAAAGCAGAGGCATTCCTTAGCTATGTAATCCTTTCTTCGTGGAAAGACACA
TTCAGGATCTTGAAAAGCTGTGAATCAGTTTCATCGTGGTCTAAAGACTTGCACATTGTC
AAACGTTGCACGGAAGCCATTTCTTGGAAAGCTTGCTCTGAGACTGGAGTGAGTAGTATA
GGAGATGAGGAAGTTTTAGTGAATGTTGCAGCAGATGATACAACCAAGTTGGTGAAGTTG
TGTGGCAATTGGTTTTTCAATGATTTTTCATCCCTTCGGATAGATCATTTTATCGAAGTA
ATTTCATTGATGAAAAAGAGAGAGATTAAGCCAGAACTTGTGGGGTCATGTATAGCTCAC
TGGACAAAGAAGTGGATTTCTCAAATCACAGTTTCACAAGATAAATTGAAAGATCAAGAA
TTGTCCATCCAGCTACAAAGAGTGACAACTGAATGTTTGATAAGGGTGCTTCCTGCTGAA
GAAGACTCAGTTTCCAGCAATTTTCTGCTTCATCTGTACAAGATTGGGCTAATTATGAAT
ATCAATCCCAAATTAAAAGATCATCTCAAGACAAGAATAGCTCTCATGCTGGAAAAATGC
AGTGCTAAAGACCTTCTAGTCAGGAACAGTACAACTCTTTTCGACGTGGATATTGTTGTT
CAAGTGGTAGAAGCTTATGTTTCTCTTGCATCAAATAATCCCAAGTCAAGAATGTGTGTT
GTCGGGAGGCTAGTGAACGACTACCTCACCCTCATAGCGAGGGATGAGAACCTAGTAGCA
AGAAGCTTTGACTCTCTTGTAAATGCATTGCCCAAAGAAGCAAGATTTTGTGATGACAAC
CTATATAGGTCGATAGACATGTACCTCAAGGAACATCCTGACCTAACAGAAGAAGAAAGA
AGAAGCATATGCAGAAAAATGGAGCACCATAAGTTATCACAGGAAGCGCAAATACATGCC
TTGAAGAATGATAGGCTGCCGGATAACATCAGGACACAACTTATAATTCTTGAGCAAGTC
AATATGATGAGGTTACTAACTTCAGATGGTTCAAGTTACCAGAGAGCTAAATCACAGAAT
ATAATGGAAGTCAGCAGCGGTTTACGCAAGAACTGGATTGATTCCTCCCAGAAGGAAATG
AAAGCGATAAAACAAGAGCTTGAGATGTTAAAGGCTCAAGTTGGTGAACTGCAACAGCGT
AGGATGGAACTTCAGCGGCGAACAAAGAAAGCTGTCTGTTGTTAG

Peptide Sequence

PEP ID

Solyc01g098820.3.1
PEP Infomation

Phototropic-responsive NPH3 family protein, putative (AHRD V3.3 *** A0A061FBG1_THECC)
Sequence

MVKENPVTGESIFVEKRNHCVIYPASGSMVAESVERRNKNWYVQTKIPSDLIVEIRDQSF
HLHKLSVVSRSGYLNRLVFERNGNNYTRVQIDTIPGGAKIFELVVKFCYGLKIKATASNV
APLYCAAHFLEMNDELHQGNLISKAEAFLSYVILSSWKDTFRILKSCESVSSWSKDLHIV
KRCTEAISWKACSETGVSSIGDEEVLVNVAADDTTKLVKLCGNWFFNDFSSLRIDHFIEV
ISLMKKREIKPELVGSCIAHWTKKWISQITVSQDKLKDQELSIQLQRVTTECLIRVLPAE
EDSVSSNFLLHLYKIGLIMNINPKLKDHLKTRIALMLEKCSAKDLLVRNSTTLFDVDIVV
QVVEAYVSLASNNPKSRMCVVGRLVNDYLTLIARDENLVARSFDSLVNALPKEARFCDDN
LYRSIDMYLKEHPDLTEEERRSICRKMEHHKLSQEAQIHALKNDRLPDNIRTQLIILEQV
NMMRLLTSDGSSYQRAKSQNIMEVSSGLRKNWIDSSQKEMKAIKQELEMLKAQVGELQQR
RMELQRRTKKAVCC*

Transcript Sequence

Transcript ID

Solyc01g098820.3.1
Transcript Infomation

Phototropic-responsive NPH3 family protein, putative (AHRD V3.3 *** A0A061FBG1_THECC)
Sequence

CCACTACCAGAGCTTGAATACATGGAAAAGAATCACCTAATATTTTGTCGCTGAAATTTT
CGTCATGACTGTTGGAACAAAGTGTTGTGGAATATTATTTTCATGGACCTTTAAATGTAA
GAACTTGAAATTTACCTCTTATCAATCCTGGTGGGTAGATTTGATTTCTTGACGAAGTCC
AGTAGATGAAAGTTCAGTTTAGGTGAGAAAAGATCATTAGAGAAATAGAAAACGTCATCG
ATTAGTACTGTTGATATTATATTTGTGCAAATACTACGTCTGCTATGCAAATTTTGTGTT
TCGAGTCAGTTGTATTACACATCCCTTTAGGAAGAAAGTGATTATTGACTAAAGGACTAA
AAGAAAGACTGGTTCCTAAAATTCCTAAATTAATTAGCACTCTTAAAAATTCAATGCATG
AAAGGGACACTATGGTGATGGAATTATATAATATATTGCAAAGAAGAATATAGTGTATAG
TTTAGTATAGAGGAAACTAAAGGGATAGTATACCTGCTGAAGATATGGTGAAAGAAAATC
CAGTAACTGGTGAATCTATATTTGTCGAAAAGAGAAATCACTGTGTGATTTATCCAGCCA
GTGGCAGTATGGTGGCAGAGTCTGTGGAAAGAAGAAACAAGAACTGGTATGTCCAAACAA
AAATACCAAGTGATTTGATAGTAGAAATTAGAGACCAAAGCTTCCACTTGCATAAGCTTT
CCGTGGTTTCAAGAAGTGGATACCTTAATAGATTGGTATTCGAAAGGAATGGAAACAACT
ATACTAGAGTTCAGATTGACACAATACCTGGTGGCGCTAAAATCTTTGAGTTAGTAGTGA
AGTTTTGCTATGGACTGAAGATCAAAGCTACAGCTTCAAATGTTGCCCCACTGTATTGTG
CTGCTCATTTCTTGGAAATGAATGATGAACTTCACCAAGGAAATCTAATTTCTAAAGCAG
AGGCATTCCTTAGCTATGTAATCCTTTCTTCGTGGAAAGACACATTCAGGATCTTGAAAA
GCTGTGAATCAGTTTCATCGTGGTCTAAAGACTTGCACATTGTCAAACGTTGCACGGAAG
CCATTTCTTGGAAAGCTTGCTCTGAGACTGGAGTGAGTAGTATAGGAGATGAGGAAGTTT
TAGTGAATGTTGCAGCAGATGATACAACCAAGTTGGTGAAGTTGTGTGGCAATTGGTTTT
TCAATGATTTTTCATCCCTTCGGATAGATCATTTTATCGAAGTAATTTCATTGATGAAAA
AGAGAGAGATTAAGCCAGAACTTGTGGGGTCATGTATAGCTCACTGGACAAAGAAGTGGA
TTTCTCAAATCACAGTTTCACAAGATAAATTGAAAGATCAAGAATTGTCCATCCAGCTAC
AAAGAGTGACAACTGAATGTTTGATAAGGGTGCTTCCTGCTGAAGAAGACTCAGTTTCCA
GCAATTTTCTGCTTCATCTGTACAAGATTGGGCTAATTATGAATATCAATCCCAAATTAA
AAGATCATCTCAAGACAAGAATAGCTCTCATGCTGGAAAAATGCAGTGCTAAAGACCTTC
TAGTCAGGAACAGTACAACTCTTTTCGACGTGGATATTGTTGTTCAAGTGGTAGAAGCTT
ATGTTTCTCTTGCATCAAATAATCCCAAGTCAAGAATGTGTGTTGTCGGGAGGCTAGTGA
ACGACTACCTCACCCTCATAGCGAGGGATGAGAACCTAGTAGCAAGAAGCTTTGACTCTC
TTGTAAATGCATTGCCCAAAGAAGCAAGATTTTGTGATGACAACCTATATAGGTCGATAG
ACATGTACCTCAAGGAACATCCTGACCTAACAGAAGAAGAAAGAAGAAGCATATGCAGAA
AAATGGAGCACCATAAGTTATCACAGGAAGCGCAAATACATGCCTTGAAGAATGATAGGC
TGCCGGATAACATCAGGACACAACTTATAATTCTTGAGCAAGTCAATATGATGAGGTTAC
TAACTTCAGATGGTTCAAGTTACCAGAGAGCTAAATCACAGAATATAATGGAAGTCAGCA
GCGGTTTACGCAAGAACTGGATTGATTCCTCCCAGAAGGAAATGAAAGCGATAAAACAAG
AGCTTGAGATGTTAAAGGCTCAAGTTGGTGAACTGCAACAGCGTAGGATGGAACTTCAGC
GGCGAACAAAGAAAGCTGTCTGTTGTTAGTTTGTTATGCTTCATGTCTGTTTAGTGAAGT
GAAAGTTTGGACAATGTAGTTTCAGTTTGTTGAACTCAACCTGGTTTGGTTGATGAGATT
TCCCCTTGTAAGTCTGGTAGTAGGAATAGTTGTTTAAGA