Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g096600.3.1
CDS Infomation

THO complex subunit 1 (AHRD V3.3 *** A0A0B0MSX7_GOSAR)
Sequence

ATGGATTTGTTTAGGCAGGCTATTCTTCGACAAGGGCCACCTGAAGAATTCGCTCTTCTA
ACTGTTCAAGAAGCTATAAAACCTCAGAAGCAAACTAAGCTAGTCCAAGATGAGAATCAG
CTGTTGGAAAATATTCTCAGGTCGCTACTTCAAGAATTGGTGGCTGCTGCAGTTCAGTCG
GGGCAGAAACTCATGAAGTACGGAGTGTCAATTGTTGATGGTGAATCAAGTCAGGGTCAG
ATTCCCCGCCTTCTTGATATTGTTCTATATCTTTGTGAGAAAGAGCACGTCGAAGGTGGC
ATGATATTTCAACTTTTGGAAGATTTGACAGAAATGTCAACAATGAGAAATTGTGAGGAC
GTTTTTGGGTATATAGAGAGCAAACAAGACATATTGGGGAAGCCAGAACTCTTTGCCCGG
GGAAAGCTTGTTATGTTGAGGACGTGTAATCAGTTGCTTCGTCGTCTATCAAAGGCAAAT
GATGTTGTTTTCTGTGGGCGCATTATCATGTTTCTAGCTCACTTCTTCCCCTTATCTGAG
CGTTCTGCTGTAAATATAAAGGGTGTTTTCAATACATCGAATGAGACAAAGTATGAGACA
GAAGTTCCTGATGGTAGGCATCTTTCCCTTCACTTTCTTGCAGATTTGGTTTTGCACTTT
TTTAATGCTAACAGTGCATCAACTTGTTTGGTTTCAGGTATTTCTATTGATTTCAACTTT
TATAGAACACTTTGGAGTCTACAGGAATACTTCTGCAATCCACCATCCTTGATTAATGCT
CCCGGCAAGTGGCACAAATTTACATCCAGTTTGACGCTTGTTCTAAACACTTTCGAGGCT
CAGCCTTTAAGTGATGAAGAGGGAAATGCTCATAACCTTGAGGATGATGCTGCAACCTTC
AACATAAAATATCTTACAAGCAGTAAACTTATGGGTCTCGAGCTGAAAGATCCTAGTTTC
AGGCGCCACGTTCTGGTTCAGTGCCTCATTCTGTTCGACTATTTGAAGGCACCAGGGAAA
AGTGAGAAGGAATTGCCCTCTGAAGCAATGAAGGAGGAAATAAAGACTAGTGAAGAGCGG
GCAAAGAAGCTTCTTGAAATGACTCCACCCAAAGGCATAGATTTCCTCCGCAGTATTGAG
CACATTTTGGAGCGTGAAAGGAATTGGGTTTGGTGGAAACGTGATGGCTGCCCCCCATTT
GAGAAGCAACCGGTAGAGAAAAAGCTGGTTCAAGATGGAACCAAAAAACGTCGGACACGA
TGGAGTCTTGGAAACAAAGAACTCTCCCAACTGTGGAAATGGGCTGATCAGTATTCGGGT
GCTTTAACTGATGCTGAACGGGTGGCCACTCCTGCTATCACAAAGTACTGGAAACCTCTG
GCAGAAGATATGGATGAATCTGCTGGAATAGAAGCAGAATACCATCACAAAAACAATCGG
GTCTATTGTTGGAAAGGTTTGCGGTTTTCAGCCCGGCAAGACTTGGAAGGATTTTCCAGA
TTTACAGAACATGGTATTGAGGGGGTAGTGCCTCTGGAGCTTTTGCCTAATGAAGTTCGG
GCCAAATATCAAGCTAAACCAAGCGAAAGGACTAAGCGGACGAAGAAGGAGGACACAAAA
AACTCAGCACAACAAGCAGAAGAAAATCAGATTGCAACACCACCAAGTGAGATGGACAAT
GAAGTGGGCAGAGCGGATCCTGAAGCATCTGCTGCTCCCATGGATACAGATGCAGGAATA
GCTACTGTTAACATATGTCAGGAAGAAACTCCTACTCCGGAGGATAACCAGAAGCAAAGC
TCTGACACAGATGTTGCTCAAGAAGCAGGGCAGATTGAAGCAGACACAGAAGCAGAGACG
GGGATGATTGATGGAGAAACAGATGCAGAAGATCTAGATACAGCAGGATAA

Peptide Sequence

PEP ID

Solyc01g096600.3.1
PEP Infomation

THO complex subunit 1 (AHRD V3.3 *** A0A0B0MSX7_GOSAR)
Sequence

MDLFRQAILRQGPPEEFALLTVQEAIKPQKQTKLVQDENQLLENILRSLLQELVAAAVQS
GQKLMKYGVSIVDGESSQGQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCED
VFGYIESKQDILGKPELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSE
RSAVNIKGVFNTSNETKYETEVPDGRHLSLHFLADLVLHFFNANSASTCLVSGISIDFNF
YRTLWSLQEYFCNPPSLINAPGKWHKFTSSLTLVLNTFEAQPLSDEEGNAHNLEDDAATF
NIKYLTSSKLMGLELKDPSFRRHVLVQCLILFDYLKAPGKSEKELPSEAMKEEIKTSEER
AKKLLEMTPPKGIDFLRSIEHILERERNWVWWKRDGCPPFEKQPVEKKLVQDGTKKRRTR
WSLGNKELSQLWKWADQYSGALTDAERVATPAITKYWKPLAEDMDESAGIEAEYHHKNNR
VYCWKGLRFSARQDLEGFSRFTEHGIEGVVPLELLPNEVRAKYQAKPSERTKRTKKEDTK
NSAQQAEENQIATPPSEMDNEVGRADPEASAAPMDTDAGIATVNICQEETPTPEDNQKQS
SDTDVAQEAGQIEADTEAETGMIDGETDAEDLDTAG*

Transcript Sequence

Transcript ID

Solyc01g096600.3.1
Transcript Infomation

THO complex subunit 1 (AHRD V3.3 *** A0A0B0MSX7_GOSAR)
Sequence

TAAATCCTACCTAACTAATACCCGCATAACTAATATTCAAATAACAAAATCTTACATAAC
TATACCTACATAACTCCACCGATGAAACTTATTTGACATTTTATGCGAATTTTTTAATTT
TATTTCTTCTTATATAAACCGTAACAGACCACATAAAAAAAGAGAAATTCTTCCGCGTTT
TGCAAGAATTCTCAAGAAATCAAGAAGAGAGAACTCAAATTTTGTAGCTATAAAATACCC
CTAAATTCCTTAAACCCCCATTTTCAGTCTCTGCTTCTCTCACACTCACACTGCAGTGTC
TCTTTCGTTAGTGGAAATTTGAAAAAAGGAAGAAGAAAGAGGCTCTCAATCTTCAGTATG
GATTTGTTTAGGCAGGCTATTCTTCGACAAGGGCCACCTGAAGAATTCGCTCTTCTAACT
GTTCAAGAAGCTATAAAACCTCAGAAGCAAACTAAGCTAGTCCAAGATGAGAATCAGCTG
TTGGAAAATATTCTCAGGTCGCTACTTCAAGAATTGGTGGCTGCTGCAGTTCAGTCGGGG
CAGAAACTCATGAAGTACGGAGTGTCAATTGTTGATGGTGAATCAAGTCAGGGTCAGATT
CCCCGCCTTCTTGATATTGTTCTATATCTTTGTGAGAAAGAGCACGTCGAAGGTGGCATG
ATATTTCAACTTTTGGAAGATTTGACAGAAATGTCAACAATGAGAAATTGTGAGGACGTT
TTTGGGTATATAGAGAGCAAACAAGACATATTGGGGAAGCCAGAACTCTTTGCCCGGGGA
AAGCTTGTTATGTTGAGGACGTGTAATCAGTTGCTTCGTCGTCTATCAAAGGCAAATGAT
GTTGTTTTCTGTGGGCGCATTATCATGTTTCTAGCTCACTTCTTCCCCTTATCTGAGCGT
TCTGCTGTAAATATAAAGGGTGTTTTCAATACATCGAATGAGACAAAGTATGAGACAGAA
GTTCCTGATGGTAGGCATCTTTCCCTTCACTTTCTTGCAGATTTGGTTTTGCACTTTTTT
AATGCTAACAGTGCATCAACTTGTTTGGTTTCAGGTATTTCTATTGATTTCAACTTTTAT
AGAACACTTTGGAGTCTACAGGAATACTTCTGCAATCCACCATCCTTGATTAATGCTCCC
GGCAAGTGGCACAAATTTACATCCAGTTTGACGCTTGTTCTAAACACTTTCGAGGCTCAG
CCTTTAAGTGATGAAGAGGGAAATGCTCATAACCTTGAGGATGATGCTGCAACCTTCAAC
ATAAAATATCTTACAAGCAGTAAACTTATGGGTCTCGAGCTGAAAGATCCTAGTTTCAGG
CGCCACGTTCTGGTTCAGTGCCTCATTCTGTTCGACTATTTGAAGGCACCAGGGAAAAGT
GAGAAGGAATTGCCCTCTGAAGCAATGAAGGAGGAAATAAAGACTAGTGAAGAGCGGGCA
AAGAAGCTTCTTGAAATGACTCCACCCAAAGGCATAGATTTCCTCCGCAGTATTGAGCAC
ATTTTGGAGCGTGAAAGGAATTGGGTTTGGTGGAAACGTGATGGCTGCCCCCCATTTGAG
AAGCAACCGGTAGAGAAAAAGCTGGTTCAAGATGGAACCAAAAAACGTCGGACACGATGG
AGTCTTGGAAACAAAGAACTCTCCCAACTGTGGAAATGGGCTGATCAGTATTCGGGTGCT
TTAACTGATGCTGAACGGGTGGCCACTCCTGCTATCACAAAGTACTGGAAACCTCTGGCA
GAAGATATGGATGAATCTGCTGGAATAGAAGCAGAATACCATCACAAAAACAATCGGGTC
TATTGTTGGAAAGGTTTGCGGTTTTCAGCCCGGCAAGACTTGGAAGGATTTTCCAGATTT
ACAGAACATGGTATTGAGGGGGTAGTGCCTCTGGAGCTTTTGCCTAATGAAGTTCGGGCC
AAATATCAAGCTAAACCAAGCGAAAGGACTAAGCGGACGAAGAAGGAGGACACAAAAAAC
TCAGCACAACAAGCAGAAGAAAATCAGATTGCAACACCACCAAGTGAGATGGACAATGAA
GTGGGCAGAGCGGATCCTGAAGCATCTGCTGCTCCCATGGATACAGATGCAGGAATAGCT
ACTGTTAACATATGTCAGGAAGAAACTCCTACTCCGGAGGATAACCAGAAGCAAAGCTCT
GACACAGATGTTGCTCAAGAAGCAGGGCAGATTGAAGCAGACACAGAAGCAGAGACGGGG
ATGATTGATGGAGAAACAGATGCAGAAGATCTAGATACAGCAGGATAATCCAAGTGTGTA
TTGGATTGTGCACCATGCCGGTGTAACTTGTGTCAACAATCCACTTAATCTGGGCTCAAT
TTGTACCATGTAACTTAAGTCAGTTGCTTAAGAAGCTTGACAGCAAAAAAAAAAATAAAT
TAAAAATTACACAATTTAGAATTAATTACACATTTTTGCATAGATCTTAATTGTTGAGAG
GTGGGATTTGTTGCAAGTGAGATTGAAGGATGGGTGTTGTGTATTAAATTATTAATAATA
CCTCTTTTTATGTTGTTTGGTTGATTACGCAAGTTCTATTTCTTGTTGATACTCTATTAT
GTAATAATTGTCTTAGATTAAGCAAGTTTTTCAAATTTAAGTTTAATTATGATTATTCGG
CAGAGTTCCTAAGTTATTCAACTGAGTCTAATATAACATGAAATCCTACTAATTTGACAT
GACTTGCATGCCACTGTTGT