Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g096500.3.1
CDS Infomation

Sphingoid long-chain bases kinase 1 (AHRD V3.3 *** A0A151QX93_CAJCA)
Sequence

ATGCAGAAGAGTGGGAATCTTGTTAAAAATAATTCTTTGAAAATTACAACTCAGCAGTCT
CTTCGACGTCTTGGTTTATGTTCCCAGATTACATCTGGGCAGCATTCATCTCCGGTTGTT
TTCCCTGAAAAACGAAGCAAAGGAAGGAGTCTGACACGTGGAGAACTTAGTCTGAGTAAT
AATGATTCTAAGAAAGAGAAAAATGAGGAGCATAGGATTGACATTGGGGATGAGCAGTCT
GACCTGCTTGGATATGAAGTATTTTCTGGAAAGCTGGTTTTGGACAAGGGAAAGACATAT
AAAAATTCGGAGTTAGAAGCCTCAAAGGAGGTTACTAGCCAGGATGCTGTTGAAGCCAAA
CTTACGAGCAAGGCTATGGTTTGGGGTTCTAGTATGCTGCATCTAGAAGATGTTATTTCG
GTATCACACTGTCCTGGACTCCGGCATTTCACCATCCATTCATATCCTCTGAGAAGAGGT
TCCGGTGCTCTTTCTTGTTTTTTAAAATCTCGAAGAAGTCAGAAGGACTTCCGCTTCTTA
GCTTCTTCATCCGAGGAAGCACTTCAATGGGTAAATGCATTTGCAGATCAACACTGTTAT
GTGAATTTACTGCCTCATCCTCTGGCTTCATCAAAGAAGCAGGCTTCTGATTTGGTTACT
AATGAATTTCCTCCTGAGTCATATGTACGATGTAAAAATCCTCCTAAAATGCTTGTCATT
CTAAACCCAAGGTCTGGTCGAGGTCGTTCAAGTAAAGTATTCCATCGCAAGGTTGAACCT
ATATTCAAGCTTGCTGGGTTTAAGTTGGAAGTAGTCAAAACCACATCTGCAGGTCATGCT
AGGAAACTTGCAAGCACAGTAGACTTCAGCACATGTCCTGATGGTATTATATGTGTTGGA
GGTGATGGAATAGTGAATGAGGTTTTAAACGGGTTACTCACTAGGGATAACCAGAAAGAA
GCAATTTCGGTTCCAATTGGAATCATTCCTGCTGGTTCTGATAATTCTTTGGTCTGGACC
GTGCTTGGAGTTAGAGATCCAGTGTCAGCTGCAATAGCGATTGTCAAGGGAGGGCTTACA
CCTACCGATGTTTTTGCTGTTGAATGGGTTCAAAGTGGTAGAATTCACTTTGGATCGACT
GTCACCTACTTTGGCTTTGTGAGCGATGTGCTGGAACTATCTGAGAAATACCAGAAGCGG
TTTGGTCCATTGCGCTACTTTGTCGCTGGGTTCCTCAAATTCATGTGCTTACCAAAGTAC
AATTTTGAAGTGGAGTATCTTCCAGCACTGAAAGAAGCAACTGGAGAAGGAAAAGCTTCA
GTCATTGATATGTCTGAACTGTATACAGACATTATGAGAAGGTCAAGCAAGGAAGGGCTT
CCCAGAGCCTCAAGCTTATCAAGTATTGATTCAATAATGACCCCAAGCAGAATGTCTGGA
GCAGACTTGGATACTACATGTAGTAGCACTGAGCCATCAGAATATGTGCGTGCAATTGAT
GCAAAATCTAAGCGCTTGTCTGCTGGACGAAGTGGCAACACAACTTCTGAACCGGAAGTT
ATCCACCCTCAGGTTCCACATTCAGTAACACCGAATTGGCCCAGGACTAGGTCCAAATCA
AAAACAGATAAAGGGTGGGCTGGGTTGACTGCTGCAAATGACCTCACTAGATCTTCTTGG
GCAAATACAACTACAAATGATAAAGAGGATATCTCATCAACAATGTCAGACCCGGGGCCA
ATTTGGGACGCAGAACCAAGATGGGATACAGAACCTCATTGGAATATAGAAAATCCTATT
GAATTGCCTGGACCAGCAGAAGATACTGAAGATGTTGTTCGGAAAGATATTGTCCACAAG
GCTGCTGAAGAATGGGTGTCTACCAAAGGTCAATTTCTTGGTGTCCTGGTATGCAATCAT
TCATGCAAGACAGTTCAAAGCTTAAGTTCACAGGTTGTGGCCCCAAAAGCAGAACCTGAT
GACAACACGTTAGATCTGTTGTTGGTCCATGGAAGTGGAAGACTGAAGCTTATAAGGTTC
TTCTTGCTTCTGCAAATGGGCCGACACCTTTCCCTCCCGTACGTTGAGTATGTCAAGGTT
AAGGCAGTAAAGGTTAAGCCTGGGAAGCACTCTAACAGTAGCTGTGGTATTGATGGTGAA
CTTTTCCCGGTAAATGAGCAAGTGATTTCGTCCTTGCTTCCAGAACAGTGCAGGCTTATT
GGTCGCGCCCCAGGTAATTGCAAGTGA

Peptide Sequence

PEP ID

Solyc01g096500.3.1
PEP Infomation

Sphingoid long-chain bases kinase 1 (AHRD V3.3 *** A0A151QX93_CAJCA)
Sequence

MQKSGNLVKNNSLKITTQQSLRRLGLCSQITSGQHSSPVVFPEKRSKGRSLTRGELSLSN
NDSKKEKNEEHRIDIGDEQSDLLGYEVFSGKLVLDKGKTYKNSELEASKEVTSQDAVEAK
LTSKAMVWGSSMLHLEDVISVSHCPGLRHFTIHSYPLRRGSGALSCFLKSRRSQKDFRFL
ASSSEEALQWVNAFADQHCYVNLLPHPLASSKKQASDLVTNEFPPESYVRCKNPPKMLVI
LNPRSGRGRSSKVFHRKVEPIFKLAGFKLEVVKTTSAGHARKLASTVDFSTCPDGIICVG
GDGIVNEVLNGLLTRDNQKEAISVPIGIIPAGSDNSLVWTVLGVRDPVSAAIAIVKGGLT
PTDVFAVEWVQSGRIHFGSTVTYFGFVSDVLELSEKYQKRFGPLRYFVAGFLKFMCLPKY
NFEVEYLPALKEATGEGKASVIDMSELYTDIMRRSSKEGLPRASSLSSIDSIMTPSRMSG
ADLDTTCSSTEPSEYVRAIDAKSKRLSAGRSGNTTSEPEVIHPQVPHSVTPNWPRTRSKS
KTDKGWAGLTAANDLTRSSWANTTTNDKEDISSTMSDPGPIWDAEPRWDTEPHWNIENPI
ELPGPAEDTEDVVRKDIVHKAAEEWVSTKGQFLGVLVCNHSCKTVQSLSSQVVAPKAEPD
DNTLDLLLVHGSGRLKLIRFFLLLQMGRHLSLPYVEYVKVKAVKVKPGKHSNSSCGIDGE
LFPVNEQVISSLLPEQCRLIGRAPGNCK*

Transcript Sequence

Transcript ID

Solyc01g096500.3.1
Transcript Infomation

Sphingoid long-chain bases kinase 1 (AHRD V3.3 *** A0A151QX93_CAJCA)
Sequence

TGCATATCTTGACGTATAAATTCTTCCACTAAACTAATGTCATATAACACAACTCATGCC
ACCGAACTTATGTCGTGTGACATAATTTGTGCAACTAAACTTCTAGTTTTGAGCATTTCA
TATTTTTTAACCTCTATACATTACTTTTAAGTTTTATCGTTAAACTTATATCCATAGAGA
TAGTTTTAACTAAAATTATGACTTAAATGTTTTTTATACGTATCTACGGTGTCCATAAAT
TTCAACTCTTCTTTTGTTTATTTATAATTTTGCAGGATAGGAATTAAAAATTAGTGAGTT
TGAGAAGCAAAAGACAACCCAAAATAGAAGCATGTGACTAATGACCTCACATAATCCACC
TACTAACAACTCTTCCATTTACCTAATACTCTACACAAAACCAAATTAAGATATTCAAAT
GAAACACACAAAATATTATTTTAACTAAAATAAGGACAATTAGATAATTATAATTTTCCA
TGTCCTAAAGCTAAAAATAAATAAATTAAAGCAGATCCATTAAAATTAACAAATGATATG
AAGGAATACTTTAGCATTATAGAAGAGAGAAGGATTTTATTTTATTTTTTTTATTTGCTC
ATGTTTGGTAGATGAGAGAAAGTGGACGGAAAAAGCGATTTCTCATTTCTCTGTGTTTTC
CTTTCTCTACCATATGTGAAGTATATCGGGTCATTTCTCTTCTCCGCTCATCGGCTCCCC
CGTGAACTGCCGTCGTGCCAACTTCAGGACGCATTTGTTTCCGATGAGATTTTCACTGCA
AACATCAATTAAGGATTTCGATTTTCATCAGAGCACACGAGAACCGTAGATTTTGACCTC
AAAAACCCTAGCAATCAGGTTTGGTGTTTCTGCTGGATGTGAATTTTAGGCCTTGAATTA
GCTATTTTCTGGATCTTGATACATTAGCACTATAGCTACCCGTTATTGTTCAGTTGTATT
CTCTCTCTTTTGCTCAGCCGGCAGAAATATGCAGAAGAGTGGGAATCTTGTTAAAAATAA
TTCTTTGAAAATTACAACTCAGCAGTCTCTTCGACGTCTTGGTTTATGTTCCCAGATTAC
ATCTGGGCAGCATTCATCTCCGGTTGTTTTCCCTGAAAAACGAAGCAAAGGAAGGAGTCT
GACACGTGGAGAACTTAGTCTGAGTAATAATGATTCTAAGAAAGAGAAAAATGAGGAGCA
TAGGATTGACATTGGGGATGAGCAGTCTGACCTGCTTGGATATGAAGTATTTTCTGGAAA
GCTGGTTTTGGACAAGGGAAAGACATATAAAAATTCGGAGTTAGAAGCCTCAAAGGAGGT
TACTAGCCAGGATGCTGTTGAAGCCAAACTTACGAGCAAGGCTATGGTTTGGGGTTCTAG
TATGCTGCATCTAGAAGATGTTATTTCGGTATCACACTGTCCTGGACTCCGGCATTTCAC
CATCCATTCATATCCTCTGAGAAGAGGTTCCGGTGCTCTTTCTTGTTTTTTAAAATCTCG
AAGAAGTCAGAAGGACTTCCGCTTCTTAGCTTCTTCATCCGAGGAAGCACTTCAATGGGT
AAATGCATTTGCAGATCAACACTGTTATGTGAATTTACTGCCTCATCCTCTGGCTTCATC
AAAGAAGCAGGCTTCTGATTTGGTTACTAATGAATTTCCTCCTGAGTCATATGTACGATG
TAAAAATCCTCCTAAAATGCTTGTCATTCTAAACCCAAGGTCTGGTCGAGGTCGTTCAAG
TAAAGTATTCCATCGCAAGGTTGAACCTATATTCAAGCTTGCTGGGTTTAAGTTGGAAGT
AGTCAAAACCACATCTGCAGGTCATGCTAGGAAACTTGCAAGCACAGTAGACTTCAGCAC
ATGTCCTGATGGTATTATATGTGTTGGAGGTGATGGAATAGTGAATGAGGTTTTAAACGG
GTTACTCACTAGGGATAACCAGAAAGAAGCAATTTCGGTTCCAATTGGAATCATTCCTGC
TGGTTCTGATAATTCTTTGGTCTGGACCGTGCTTGGAGTTAGAGATCCAGTGTCAGCTGC
AATAGCGATTGTCAAGGGAGGGCTTACACCTACCGATGTTTTTGCTGTTGAATGGGTTCA
AAGTGGTAGAATTCACTTTGGATCGACTGTCACCTACTTTGGCTTTGTGAGCGATGTGCT
GGAACTATCTGAGAAATACCAGAAGCGGTTTGGTCCATTGCGCTACTTTGTCGCTGGGTT
CCTCAAATTCATGTGCTTACCAAAGTACAATTTTGAAGTGGAGTATCTTCCAGCACTGAA
AGAAGCAACTGGAGAAGGAAAAGCTTCAGTCATTGATATGTCTGAACTGTATACAGACAT
TATGAGAAGGTCAAGCAAGGAAGGGCTTCCCAGAGCCTCAAGCTTATCAAGTATTGATTC
AATAATGACCCCAAGCAGAATGTCTGGAGCAGACTTGGATACTACATGTAGTAGCACTGA
GCCATCAGAATATGTGCGTGCAATTGATGCAAAATCTAAGCGCTTGTCTGCTGGACGAAG
TGGCAACACAACTTCTGAACCGGAAGTTATCCACCCTCAGGTTCCACATTCAGTAACACC
GAATTGGCCCAGGACTAGGTCCAAATCAAAAACAGATAAAGGGTGGGCTGGGTTGACTGC
TGCAAATGACCTCACTAGATCTTCTTGGGCAAATACAACTACAAATGATAAAGAGGATAT
CTCATCAACAATGTCAGACCCGGGGCCAATTTGGGACGCAGAACCAAGATGGGATACAGA
ACCTCATTGGAATATAGAAAATCCTATTGAATTGCCTGGACCAGCAGAAGATACTGAAGA
TGTTGTTCGGAAAGATATTGTCCACAAGGCTGCTGAAGAATGGGTGTCTACCAAAGGTCA
ATTTCTTGGTGTCCTGGTATGCAATCATTCATGCAAGACAGTTCAAAGCTTAAGTTCACA
GGTTGTGGCCCCAAAAGCAGAACCTGATGACAACACGTTAGATCTGTTGTTGGTCCATGG
AAGTGGAAGACTGAAGCTTATAAGGTTCTTCTTGCTTCTGCAAATGGGCCGACACCTTTC
CCTCCCGTACGTTGAGTATGTCAAGGTTAAGGCAGTAAAGGTTAAGCCTGGGAAGCACTC
TAACAGTAGCTGTGGTATTGATGGTGAACTTTTCCCGGTAAATGAGCAAGTGATTTCGTC
CTTGCTTCCAGAACAGTGCAGGCTTATTGGTCGCGCCCCAGGTAATTGCAAGTGATTGAT
GGAGCCCTTGTATATCTTCAATAGGTCTCTCTTCCTTCCGGCTGCAACATTCAGCTCTTT
ATTCGTCATTGAGGTCCTTGTAAATTTTGTCAATGTTGCTTTCATTTTTCAAAAATTATA
TGTCAGCTTATATCTTAACATGTATCCTCTGCCGTAACTTGTATTTTTTTTGCCTTTTGA
GTTGGCTTGCTATGAATATTGGCCATGTCCCTTGTAATAGTTTGACAAAGTGTGTAAATT
ATTGTTTTTCGATCGTTGAGGAAAGAAATTTTTATTTATTCAACAGTTTCCCCTCTCTCC
ACCTTCATTGCCACATAAACAACCCTAGCACCAGCTGGAAATGGACAAAAGGAAGGACTT
AGGAAGGGGTGTGCTTCTAGCAGTTATGAGTTCTCTTCTTTTATTTTTTTCCTTTTCTTG
TGGTCATTTAAGGCCATTTTGATTGTAGTGGGAAGTTTTGGAAAATAAGTTTGATTATAA
AGATGATGGAATGGTCTGGGAGACCCTGTACTTGTTCCGCCATGTCATCTTGGTCGTTGT
ACTTCACGAAGTTTCATTCAGACAACTTCAACTCTGGCATTTTAAACACATTTAGGCTTC
AAAGAATGGAAAACAAAGTGTTTTGGTACAAGGACAGATTGGTATTTAATTCATATTTGG
C