Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc01g095110.3.1
CDS Infomation	Pentatricopeptide repeat superfamily protein, putative (AHRD V3.3 *** A0A061DUV4_THECC)
Sequence	ATGAAACTCGCAGCTGCAAGAAAATTCCTCCTCCATCTCCCCGCACTGCCGAAAACCGGC AGTATTTCCGGCTTGAGATGCTTCTCCGGCGAGATCGACGATACACAGAAACCTCTGCCA CAGCCGCCAATCTCCTTTGCCGTTCCCGAAATAGTCTCCCTTCTGAAAACTACCGATCAC AATGACTGGATTTCCAACTCCGAGCTGGTTGAATATCTTCATACTCCTCCTTCCCCAACT TCCCTTCTCAAAATTACTCGCCAATTGGGGTCCACTGAAAAAGCTTTACAATTTTTTGAA TTCTTCAAGACTCATAGTTCGAGTTCATCATCAAACCCCTCTTCTCTTTCCTTCACATTT CAAGCTATTCTCGAACAAGCAATGCGTGAAGAAAAATCTGACGTACCCCGGAAGCTATTT CAACTGTTTTCCTTTGCTAAAGACCGAAAAATCCCTTTATCGATAAATGCTGGGACTCTT CTTATGCGATGCTTTGGGCGAGCCAAAATGCTGGAGGAATCGATATCTGTATACCATGAG CTGGACTCGGATTCAAGAAATACAAATGTGGTTAATTTGTTGTTGGACTGTTTGTTTCGT GGAAGGAATATTGATGATGGGTTCAAGGTGCTCGACGAAATGCTCAAAAGGGATAGTGAT TTTCCTCCGAACAATAGTACGGTGGATATTGTTCTGAGTGCTATGTGGAAGAGTAATTGG GTGGGGAGAAGGATGAGTGTGGAGGAAATCTATGGACTTCTTGTGAGATTCTTCGAGCAT GGTGTGTTCTTGGATGATGTGTGGTTTACTAAATTGATTACCAAGTTTTGTCGAAGTGGG AAGTGTGATAAGGCCTGGGACCTTTTGCATGATATGATGAAGTTGGGTGGTCAGGTGAAA GCTTCTTCATTCAATGCCCTTTTGTGCGGGTTAGGCCGGGAGCATGATTTTCAAAAGATG AATTTGCTTATGAATGAGATGAAGGAAAAGGAAGTTAACCCGGATGTTGTGACATTTGGG ATTTTCATCAATTATTTGTGCAAATGTTACAGGGTCGATGAGGCACTTCAGGTGTTTGAG AAGATGGGAGGGAGTGGAACTGATGGGGTTCTTGTTAAACCAGACCTTGTTCTCTACAAT ACATTGATTGATGGACTTTGCAAGGTAGGGAAACAAGAAGAAGGGTTAAAGTTGATGGAG AAGATGAGATTGGAGAATGTATGTGTACCTAATACTATTACCTACAATTGCTTGATAGAT GGTTACTGCAAAGCAGGTGAGATTGAGAGGTCATTGGAGCTTTTTGACCAGATGAAAAAG GACAGGGTTGTGCCAAATGTCATAACTATGAATACTTTGCTCCATGGAATGTGCAAGTTC GGGAGAGTTAGCAGTGCTATGAGATTTTTTGCTGAGATGCAAGAGAGGGGTTTAAAGGGG AATGCAATCACCTACACCATCCTCATTACGACTTTTTGCAGTGTCAACAATATTGACAGA GCAATGAGTTTGTTCAATGAAATGTCAGAAGATGGGTGTCTCCCTGATGCCAGGGCATAC TACAGTTTGATCATGGGCCTTTGCCAGGCTCGAAGAACAGATGAGGCCTCCTGTATTGCT TCAAAGGCGAAAGAAGCTAGGGTTGACTTGGATATTATCTGCTACAATTCTCTGATTGGG GCACTTTGTAGGAAAAATAAGATTGAGGAAGCACAGAAGATGCTTAAAGATATGGAAGAG GCAGGTATCAAACCTGACTGTTACACCTACAACACTTTAATATCATATTTCAGCGAGAAG GGGCAATTTACAGCTGCCAGTAGAATTATGAAGAGGATGATTGATGATGGTTATTTGCCT GATGTTGTTACATATGGAGCATTAATTCATGCATATTGCGTAGCTGGAAATCTTGATGAA GCTATGACAATATTCCAGAATATGAGTTCAGCTATTAATGTGCCACCAAACACAGTCATA TACAATATTTTGGTTGACACTCTCTGCAAGAGTGACAAATTAGAAGCTGCTATTTCTTTG TTGGGTGATATGAAGGACAAAGGGGTAAGACCAAATACCAAAACATTCAATGCCCTCTTT AAAGGTCTTCGGGAGAGGAATTGGGTTGAAAAGGCACTTGAAATAATGGACCAAATGACT GAAAATGCATGTAATCCTGACTACATTACCATGGAAGTCCTCACTCCATGGCTTTCTGAC ATTGGTGAAACAGAAAAGTTGCGGAGTTTTGTGGAAGGATACAAGGTTTCTACTTCAACT GCCTAA

Peptide Sequence

PEP ID	Solyc01g095110.3.1
PEP Infomation	Pentatricopeptide repeat superfamily protein, putative (AHRD V3.3 *** A0A061DUV4_THECC)
Sequence	MKLAAARKFLLHLPALPKTGSISGLRCFSGEIDDTQKPLPQPPISFAVPEIVSLLKTTDH NDWISNSELVEYLHTPPSPTSLLKITRQLGSTEKALQFFEFFKTHSSSSSSNPSSLSFTF QAILEQAMREEKSDVPRKLFQLFSFAKDRKIPLSINAGTLLMRCFGRAKMLEESISVYHE LDSDSRNTNVVNLLLDCLFRGRNIDDGFKVLDEMLKRDSDFPPNNSTVDIVLSAMWKSNW VGRRMSVEEIYGLLVRFFEHGVFLDDVWFTKLITKFCRSGKCDKAWDLLHDMMKLGGQVK ASSFNALLCGLGREHDFQKMNLLMNEMKEKEVNPDVVTFGIFINYLCKCYRVDEALQVFE KMGGSGTDGVLVKPDLVLYNTLIDGLCKVGKQEEGLKLMEKMRLENVCVPNTITYNCLID GYCKAGEIERSLELFDQMKKDRVVPNVITMNTLLHGMCKFGRVSSAMRFFAEMQERGLKG NAITYTILITTFCSVNNIDRAMSLFNEMSEDGCLPDARAYYSLIMGLCQARRTDEASCIA SKAKEARVDLDIICYNSLIGALCRKNKIEEAQKMLKDMEEAGIKPDCYTYNTLISYFSEK GQFTAASRIMKRMIDDGYLPDVVTYGALIHAYCVAGNLDEAMTIFQNMSSAINVPPNTVI YNILVDTLCKSDKLEAAISLLGDMKDKGVRPNTKTFNALFKGLRERNWVEKALEIMDQMT ENACNPDYITMEVLTPWLSDIGETEKLRSFVEGYKVSTSTA*

Transcript Sequence

Transcript ID	Solyc01g095110.3.1
Transcript Infomation	Pentatricopeptide repeat superfamily protein, putative (AHRD V3.3 *** A0A061DUV4_THECC)
Sequence	ATGAAACTCGCAGCTGCAAGAAAATTCCTCCTCCATCTCCCCGCACTGCCGAAAACCGGC AGTATTTCCGGCTTGAGATGCTTCTCCGGCGAGATCGACGATACACAGAAACCTCTGCCA CAGCCGCCAATCTCCTTTGCCGTTCCCGAAATAGTCTCCCTTCTGAAAACTACCGATCAC AATGACTGGATTTCCAACTCCGAGCTGGTTGAATATCTTCATACTCCTCCTTCCCCAACT TCCCTTCTCAAAATTACTCGCCAATTGGGGTCCACTGAAAAAGCTTTACAATTTTTTGAA TTCTTCAAGACTCATAGTTCGAGTTCATCATCAAACCCCTCTTCTCTTTCCTTCACATTT CAAGCTATTCTCGAACAAGCAATGCGTGAAGAAAAATCTGACGTACCCCGGAAGCTATTT CAACTGTTTTCCTTTGCTAAAGACCGAAAAATCCCTTTATCGATAAATGCTGGGACTCTT CTTATGCGATGCTTTGGGCGAGCCAAAATGCTGGAGGAATCGATATCTGTATACCATGAG CTGGACTCGGATTCAAGAAATACAAATGTGGTTAATTTGTTGTTGGACTGTTTGTTTCGT GGAAGGAATATTGATGATGGGTTCAAGGTGCTCGACGAAATGCTCAAAAGGGATAGTGAT TTTCCTCCGAACAATAGTACGGTGGATATTGTTCTGAGTGCTATGTGGAAGAGTAATTGG GTGGGGAGAAGGATGAGTGTGGAGGAAATCTATGGACTTCTTGTGAGATTCTTCGAGCAT GGTGTGTTCTTGGATGATGTGTGGTTTACTAAATTGATTACCAAGTTTTGTCGAAGTGGG AAGTGTGATAAGGCCTGGGACCTTTTGCATGATATGATGAAGTTGGGTGGTCAGGTGAAA GCTTCTTCATTCAATGCCCTTTTGTGCGGGTTAGGCCGGGAGCATGATTTTCAAAAGATG AATTTGCTTATGAATGAGATGAAGGAAAAGGAAGTTAACCCGGATGTTGTGACATTTGGG ATTTTCATCAATTATTTGTGCAAATGTTACAGGGTCGATGAGGCACTTCAGGTGTTTGAG AAGATGGGAGGGAGTGGAACTGATGGGGTTCTTGTTAAACCAGACCTTGTTCTCTACAAT ACATTGATTGATGGACTTTGCAAGGTAGGGAAACAAGAAGAAGGGTTAAAGTTGATGGAG AAGATGAGATTGGAGAATGTATGTGTACCTAATACTATTACCTACAATTGCTTGATAGAT GGTTACTGCAAAGCAGGTGAGATTGAGAGGTCATTGGAGCTTTTTGACCAGATGAAAAAG GACAGGGTTGTGCCAAATGTCATAACTATGAATACTTTGCTCCATGGAATGTGCAAGTTC GGGAGAGTTAGCAGTGCTATGAGATTTTTTGCTGAGATGCAAGAGAGGGGTTTAAAGGGG AATGCAATCACCTACACCATCCTCATTACGACTTTTTGCAGTGTCAACAATATTGACAGA GCAATGAGTTTGTTCAATGAAATGTCAGAAGATGGGTGTCTCCCTGATGCCAGGGCATAC TACAGTTTGATCATGGGCCTTTGCCAGGCTCGAAGAACAGATGAGGCCTCCTGTATTGCT TCAAAGGCGAAAGAAGCTAGGGTTGACTTGGATATTATCTGCTACAATTCTCTGATTGGG GCACTTTGTAGGAAAAATAAGATTGAGGAAGCACAGAAGATGCTTAAAGATATGGAAGAG GCAGGTATCAAACCTGACTGTTACACCTACAACACTTTAATATCATATTTCAGCGAGAAG GGGCAATTTACAGCTGCCAGTAGAATTATGAAGAGGATGATTGATGATGGTTATTTGCCT GATGTTGTTACATATGGAGCATTAATTCATGCATATTGCGTAGCTGGAAATCTTGATGAA GCTATGACAATATTCCAGAATATGAGTTCAGCTATTAATGTGCCACCAAACACAGTCATA TACAATATTTTGGTTGACACTCTCTGCAAGAGTGACAAATTAGAAGCTGCTATTTCTTTG TTGGGTGATATGAAGGACAAAGGGGTAAGACCAAATACCAAAACATTCAATGCCCTCTTT AAAGGTCTTCGGGAGAGGAATTGGGTTGAAAAGGCACTTGAAATAATGGACCAAATGACT GAAAATGCATGTAATCCTGACTACATTACCATGGAAGTCCTCACTCCATGGCTTTCTGAC ATTGGTGAAACAGAAAAGTTGCGGAGTTTTGTGGAAGGATACAAGGTTTCTACTTCAACT GCCTAA