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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g090820.2.1
CDS Infomation

Expansin B1 (AHRD V1 ***- C8CC40_RAPSA)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like
Sequence

ATGGGTTATAATGTTATCATTTTCAACTTTTTAGCTCTATGTTTGCTTCAACATTGCACT
TGTGCACCTGTTAAATCACTCAATGCTTCTATATCCAGTTTTCAACCAGCAGTAGCAACA
TTTTATGGCCCTCCAACTGGAGCAGGATCTGAAGGAGGAGCTTGTGGATATACAGATGCT
GTATCAAAACCCCCTTTTAATTCCTTTGTTTCTGCTGGAAATGGGCCACTTTTCAAGAAA
GGCTTGGGCTGTGGAGCTTGCTACCAGGTTTTATGCAAACTAGCCCCTTGCACAGGAAGA
CCAGTAACCGTAACGATTACAGATGAATGCCCTGGCTGTTCAGGCTCTATTCATTTTGAT
TTAAGTGGAACCGCAATGGGTGCTTTAGCTAAACCTGGTCAAGCTAACGCGTTACGTAAT
ATAGGAAATATCCCAATTTCTTACCAAAGGGTGCCATGTCATTACCAGAACTGGAAAATC
GCGTTCAAGGTGGATCAAGGTTCAAGCCCGAATTTCTTATCAGTAAATGTTGAGTTTCAA
AATGGAGACGGTGATCTTAGTTTAGTCGAATTTTTACCAGCAAGGTCAAATCAAGCGATA
AGAGCGAATCATGTATTTGGTGCAACATGGAGCAGTAATATTAATCCGGCAGCACAACCA
GCGCCTTATTCAATTAGGGTTACAACTGGGTCTAACAAGAAACTTACTGCTACTAATGTT
ATTCCTGTGGGATGGCAACCTGGACGCACTTACCGGTCTAATGTCAATTTTTAA

Peptide Sequence

PEP ID

Solyc01g090820.2.1
PEP Infomation

Expansin B1 (AHRD V1 ***- C8CC40_RAPSA)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like
Sequence

MGYNVIIFNFLALCLLQHCTCAPVKSLNASISSFQPAVATFYGPPTGAGSEGGACGYTDA
VSKPPFNSFVSAGNGPLFKKGLGCGACYQVLCKLAPCTGRPVTVTITDECPGCSGSIHFD
LSGTAMGALAKPGQANALRNIGNIPISYQRVPCHYQNWKIAFKVDQGSSPNFLSVNVEFQ
NGDGDLSLVEFLPARSNQAIRANHVFGATWSSNINPAAQPAPYSIRVTTGSNKKLTATNV
IPVGWQPGRTYRSNVNF*

Transcript Sequence

Transcript ID

Solyc01g090820.2.1
Transcript Infomation

Expansin B1 (AHRD V1 ***- C8CC40_RAPSA)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like
Sequence

ATGGGTTATAATGTTATCATTTTCAACTTTTTAGCTCTATGTTTGCTTCAACATTGCACT
TGTGCACCTGTTAAATCACTCAATGCTTCTATATCCAGTTTTCAACCAGCAGTAGCAACA
TTTTATGGCCCTCCAACTGGAGCAGGATCTGAAGGAGGAGCTTGTGGATATACAGATGCT
GTATCAAAACCCCCTTTTAATTCCTTTGTTTCTGCTGGAAATGGGCCACTTTTCAAGAAA
GGCTTGGGCTGTGGAGCTTGCTACCAGGTTTTATGCAAACTAGCCCCTTGCACAGGAAGA
CCAGTAACCGTAACGATTACAGATGAATGCCCTGGCTGTTCAGGCTCTATTCATTTTGAT
TTAAGTGGAACCGCAATGGGTGCTTTAGCTAAACCTGGTCAAGCTAACGCGTTACGTAAT
ATAGGAAATATCCCAATTTCTTACCAAAGGGTGCCATGTCATTACCAGAACTGGAAAATC
GCGTTCAAGGTGGATCAAGGTTCAAGCCCGAATTTCTTATCAGTAAATGTTGAGTTTCAA
AATGGAGACGGTGATCTTAGTTTAGTCGAATTTTTACCAGCAAGGTCAAATCAAGCGATA
AGAGCGAATCATGTATTTGGTGCAACATGGAGCAGTAATATTAATCCGGCAGCACAACCA
GCGCCTTATTCAATTAGGGTTACAACTGGGTCTAACAAGAAACTTACTGCTACTAATGTT
ATTCCTGTGGGATGGCAACCTGGACGCACTTACCGGTCTAATGTCAATTTTTAA