Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g090170.3.1
CDS Infomation

ras-related protein Rab-1A
Sequence

ATGGGAAAAATAATGGAAAGTTCAGCTTCACCAAATGGTTCATTTACTAGTGCCATGACA
CTTACTGAAGAGGAACTAACCTGTGTTCCCAAGCGTTATATCCTTCCACCATCCTTACGG
CCCAATTGTACCTTGCCAATTGTGGATCTATCTTATCTGCAATACCCTCATCTTCGATCT
CAGATAATTCAGGAAGTACACCTGGCTTGCAAGAAATTTGGTTTCTTCCAGGATCCAAAT
AAGAAGTATATGCATGCCCCAAGTGAGAAAAAAGATGATGCCATATCATCAACATACAGA
AATAACTTAATGTCACACATGGTAATTAACCATGGAATCCCAATGTCAGTCATGAAAGAT
GCCATAGAAGTTGCGAGTGAATTCTTCAATTTACCAACTGAAGAGAAAAGACATCTCTTG
TCTTCAAATGTTCATGACCCCGTAAGATATGGTACCAGTCTAAATCATGTCAAAGACAAA
GTATACTTTTGGAGAGACTTCCTCAAGCACTATGCTAATCCAACCTCAACGTGGCTCGAC
TTTTGGCCATCAAATCCCACAAGTTACAAGAAGAAAATGGGAAACTACACAGTGGCAGCA
CAAAAGTTGCAAGAAGGACTCATGAAAATGATATTTGAGAGCTTAGGACTAAACAGTAAT
TACTTACATGAAGACATTACAGAAGGTTCCCAGGTCATGGCAGTCAATTGCTATCCAGCA
TGTCCTGAGCCAGATCTTACTCTAGGATTGCCACCACATACAGATTACGGTATGCTAACG
ATCATTCTTCAAAACCATCTGGGCTTACAAACCATGGATCGAGATGAAAAGTGGCATTCA
GTTCCACTCATTGAAGGGGCTCTCATTGTTCAATTGGGAGATCAAATGGAAGTATTGAGC
AATGGTAGATACAAAAGTGTTCTTCATCGAGCAACAGTTAACTCAGAAATAAAGCGCATT
TCAATTGCAAGCCTTCATAGTCTAGCTTTAGGTAAAAAAGTTAGACCTGCATCAGAGCTT
GTCAATGAACAACATATCTTATCCTATAAAGAAGGAGGCTTCAGTGATTTTCTAGATTTC
ATTTCTGGAGAAGATATCGTAGAAGCTAATGACTACCTGTTCAAACTTCTGCTTATTGGT
GATTCTGGTGTTGGAAAGTCATGTCTCCTTTTGAGGTTTGCTGATGACACATATCAGGAG
AGCTACATAAGCACAATTGGAGTTGATTTTAAAATCAGGACAGTGGAGCAAGATGGAAAG
ACCATTAAGCTTCAGATTTGGGATACTGCTGGACAAGAGCGTTTTAGGACTATCACTAGC
AGCTACTATCGTGGAGCCCATGGCATAATAGTTGTTTATGATGTGACGGATCAGGAGAGC
TTCAATAATGTGAAACAATGGCTGAGTGAAATTGACCGTTATGCTACCCCAAATGTTAAC
AAAATTCTTGTTGGGAACAAGTCTGACCTTGTTGCCAGTAGAGTTGTGTCGTATGAAACA
GCTAAGGCCTTTGCTGATGAAATTGGTATTCCATTCTTGGAGACCAGTGCGAAAGATGCT
AGTAACGTAGAAGAGTCTTTCATGGCTATGACTGCTGCTATCAAGAAAAGTATGGCAAAC
CAACCGGTCCCAAATGCTGCCCAGCCTCCAAATGTAAATATTCGTGGACAGCCCGTTGCT
CAGAATAGTGGCTGCTGCTCGTCTTGA

Peptide Sequence

PEP ID

Solyc01g090170.3.1
PEP Infomation

ras-related protein Rab-1A
Sequence

MGKIMESSASPNGSFTSAMTLTEEELTCVPKRYILPPSLRPNCTLPIVDLSYLQYPHLRS
QIIQEVHLACKKFGFFQDPNKKYMHAPSEKKDDAISSTYRNNLMSHMVINHGIPMSVMKD
AIEVASEFFNLPTEEKRHLLSSNVHDPVRYGTSLNHVKDKVYFWRDFLKHYANPTSTWLD
FWPSNPTSYKKKMGNYTVAAQKLQEGLMKMIFESLGLNSNYLHEDITEGSQVMAVNCYPA
CPEPDLTLGLPPHTDYGMLTIILQNHLGLQTMDRDEKWHSVPLIEGALIVQLGDQMEVLS
NGRYKSVLHRATVNSEIKRISIASLHSLALGKKVRPASELVNEQHILSYKEGGFSDFLDF
ISGEDIVEANDYLFKLLLIGDSGVGKSCLLLRFADDTYQESYISTIGVDFKIRTVEQDGK
TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLSEIDRYATPNVN
KILVGNKSDLVASRVVSYETAKAFADEIGIPFLETSAKDASNVEESFMAMTAAIKKSMAN
QPVPNAAQPPNVNIRGQPVAQNSGCCSS*

Transcript Sequence

Transcript ID

Solyc01g090170.3.1
Transcript Infomation

ras-related protein Rab-1A
Sequence

ATTGACACCCCTAAACACAAGAGTAGCACTGAACAAATAGGCAGCGAGTTAATTACTTCC
CAGATAGGAAACTAAAGTAAAAAAGAATAATGTTCCAAAATCCAGAGTGCCTACGTACGC
GCGTAAAATTAGATCACCAGTCTCTCTCATGGCGCGTGGAGTCACACCCAGTTGAATCTG
AACATAGTTGCACTATCGGATTCAACATGGAGACCGACAATTACCAAGCCTGAAATATTT
CACACTTTGGCTATTCATGTATGACTATATACAATATAGTTATAGTCCTATCCATAGCAT
TATACGCATATATATTCATTACATATATCTCGATAAATAATTAAAAGCTCCAACCATATC
TTCATATTTTCCTCCTTATAAATAGGGAGGGATTAAAAGTCATATGGAACATACAGGAAG
AATAACACAATAAGGCATGGGAAAAATAATGGAAAGTTCAGCTTCACCAAATGGTTCATT
TACTAGTGCCATGACACTTACTGAAGAGGAACTAACCTGTGTTCCCAAGCGTTATATCCT
TCCACCATCCTTACGGCCCAATTGTACCTTGCCAATTGTGGATCTATCTTATCTGCAATA
CCCTCATCTTCGATCTCAGATAATTCAGGAAGTACACCTGGCTTGCAAGAAATTTGGTTT
CTTCCAGGATCCAAATAAGAAGTATATGCATGCCCCAAGTGAGAAAAAAGATGATGCCAT
ATCATCAACATACAGAAATAACTTAATGTCACACATGGTAATTAACCATGGAATCCCAAT
GTCAGTCATGAAAGATGCCATAGAAGTTGCGAGTGAATTCTTCAATTTACCAACTGAAGA
GAAAAGACATCTCTTGTCTTCAAATGTTCATGACCCCGTAAGATATGGTACCAGTCTAAA
TCATGTCAAAGACAAAGTATACTTTTGGAGAGACTTCCTCAAGCACTATGCTAATCCAAC
CTCAACGTGGCTCGACTTTTGGCCATCAAATCCCACAAGTTACAAGAAGAAAATGGGAAA
CTACACAGTGGCAGCACAAAAGTTGCAAGAAGGACTCATGAAAATGATATTTGAGAGCTT
AGGACTAAACAGTAATTACTTACATGAAGACATTACAGAAGGTTCCCAGGTCATGGCAGT
CAATTGCTATCCAGCATGTCCTGAGCCAGATCTTACTCTAGGATTGCCACCACATACAGA
TTACGGTATGCTAACGATCATTCTTCAAAACCATCTGGGCTTACAAACCATGGATCGAGA
TGAAAAGTGGCATTCAGTTCCACTCATTGAAGGGGCTCTCATTGTTCAATTGGGAGATCA
AATGGAAGTATTGAGCAATGGTAGATACAAAAGTGTTCTTCATCGAGCAACAGTTAACTC
AGAAATAAAGCGCATTTCAATTGCAAGCCTTCATAGTCTAGCTTTAGGTAAAAAAGTTAG
ACCTGCATCAGAGCTTGTCAATGAACAACATATCTTATCCTATAAAGAAGGAGGCTTCAG
TGATTTTCTAGATTTCATTTCTGGAGAAGATATCGTAGAAGCTAATGACTACCTGTTCAA
ACTTCTGCTTATTGGTGATTCTGGTGTTGGAAAGTCATGTCTCCTTTTGAGGTTTGCTGA
TGACACATATCAGGAGAGCTACATAAGCACAATTGGAGTTGATTTTAAAATCAGGACAGT
GGAGCAAGATGGAAAGACCATTAAGCTTCAGATTTGGGATACTGCTGGACAAGAGCGTTT
TAGGACTATCACTAGCAGCTACTATCGTGGAGCCCATGGCATAATAGTTGTTTATGATGT
GACGGATCAGGAGAGCTTCAATAATGTGAAACAATGGCTGAGTGAAATTGACCGTTATGC
TACCCCAAATGTTAACAAAATTCTTGTTGGGAACAAGTCTGACCTTGTTGCCAGTAGAGT
TGTGTCGTATGAAACAGCTAAGGCCTTTGCTGATGAAATTGGTATTCCATTCTTGGAGAC
CAGTGCGAAAGATGCTAGTAACGTAGAAGAGTCTTTCATGGCTATGACTGCTGCTATCAA
GAAAAGTATGGCAAACCAACCGGTCCCAAATGCTGCCCAGCCTCCAAATGTAAATATTCG
TGGACAGCCCGTTGCTCAGAATAGTGGCTGCTGCTCGTCTTGAGAGAACGTCCGAATTTG
CTTGCTGGCTCACCTCTCATCCATGACATGTCTACTGTAATCTCACTAATCAACAACAAT
GTTTACCCTTGTAGCCTTGTCCTGCAAAATCCCTACTGCTAGATATATCTTTATTTCTTG
AGAAGAAATATATGTTTTTATTGAAGTGGACCAATTGTGAACATAATGATCTTAGCATTA
TTTGTTGCACTTCGACACTTTGGCCTGCTTTTGCTTAAAAATAAATTTCTTATAGTTCAA
CAGAAAGCTATACTGGTGAACATGAACA