Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g089870.3.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GP78_POPTR)
Sequence

ATGCTTCTACAACCCACCACCACCGTTAAACCTCCACATCAAAAAACTGAAAAGTATGTC
TCTTTTTCTTCGTCCCTATCTTATTCACTGTCTTTTCCATCTGGGTTTTGCAATTTGGGT
GGTTTTACTAAACCCTTGATGTGTTCAAAGAATCATCATTCAGTTATTAGCTGTTCATCA
ACATCACAGGTGCATAGCTATGGGACTGTTGACTATGAGAGGCGGCCAATAGTGAAATGG
AATGCTATTTACAAAAGAATATCTATGAATGATGGACCAGAAAGAGGCTCTGTTAGTGTG
TTGAATCAGTGGGAAAATGAGGGGAAAAAGGTTACGAAATGGGAACTTTCTAGGGTCATT
AAGGAGCTAAGGAAGTTTAGGCGTTATAAGCTGGCTTTTGAGGTGTATGAGTGGATGAAC
AATAGACCAGAGAGGTTTAGACTAACCACCAGTGATACTGCTATTCAATTAGACCTGATA
GCAAAAGTACATGGAATATCAAGTGCTGAAGAATACTTTGATAAGTTGCCAGACACCTTA
AAAGATAAGCGGATATATGGGTCTCTTTTAAATGCCTTTGTGCGGTCTAGAAAGAAGGAA
CAAGCTGAATCTTTACTTGATAAAATGAGAAACAGAGGATACACTGATCATGCTCTTCCA
TTCAATGTGATGATGACACTCTATATGAACCTTAAAGACTACGACAAGGTTGAATCCGTG
GTTTCAGAAATGAAGGAGAAAAGAATTCCACTAGATATATATTCCTATAATATCTGGTTA
TCATCATGTGGATCTCAAGGATCTATTGAAAAAATGGAAAAGGTACTCGAACAAATGAAT
CTAGACACTGATATCAATCCAAATTGGACTACATTTAGTACCATGGCTACTATGTACATT
AAGTTGGGGCAGATGAAAAAAGCTGAAGACTCTTTGAAAAGTGTTGAGAGCAGAATCACA
GGCCGTGATCGAATTCCATATCATTATCTCATCAGTCTCTATGGTAGTCTTGGTAAAAAG
GAAGACGTTCTCCGAATCTGGAAAACCTACCAATCGCAGTTTCCAAATATTCCAAACCTG
GGATATCATTCTGTAATATCTTCTCTGGTGAGGTTGGATGATATTGAAGGTGCAGAAAAA
ATATATGATGAGTGGCTACCTGTGAAGGTTCACTATGATCCTAGAATAGGAAATCTTTTA
TTGGGTTATTACGTGAGGAAGGGTTTCGTGGACAAGGCTAGTGCTTTCTTTGACCAAATG
ATTGGAGCTGGTGGAAAGCCAAACTCAATGACCTGCGAGATCCTTGCCGAAGGCCATATC
AGGGATCGGAGGATATCAGAGGCTTTGTCATGCTTGAAGGATGCTGTTTCAAGTGAGGGA
TCAAAGAGCTGGAGACCGAAACCTGCAACTGTATCTTCCATTCTCAGGCTTTGTGAGCAG
GAAGACGATATACAAAATAAAGAAGTCCTGTTGGAGGTGTTGAAGCAAGTTGGGTGTCTT
GACGATGAAAAGTACATGTCATATATTCCATTATCAAATGGTTCATTTACCAGTAGTGAG
CGAGAAATAGAGAAGGATACATCTGATAACGATGAAGGATCTGACATACTGCTCAACCAG
TTGCAAGAAAGCTTGTGA

Peptide Sequence

PEP ID

Solyc01g089870.3.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GP78_POPTR)
Sequence

MLLQPTTTVKPPHQKTEKYVSFSSSLSYSLSFPSGFCNLGGFTKPLMCSKNHHSVISCSS
TSQVHSYGTVDYERRPIVKWNAIYKRISMNDGPERGSVSVLNQWENEGKKVTKWELSRVI
KELRKFRRYKLAFEVYEWMNNRPERFRLTTSDTAIQLDLIAKVHGISSAEEYFDKLPDTL
KDKRIYGSLLNAFVRSRKKEQAESLLDKMRNRGYTDHALPFNVMMTLYMNLKDYDKVESV
VSEMKEKRIPLDIYSYNIWLSSCGSQGSIEKMEKVLEQMNLDTDINPNWTTFSTMATMYI
KLGQMKKAEDSLKSVESRITGRDRIPYHYLISLYGSLGKKEDVLRIWKTYQSQFPNIPNL
GYHSVISSLVRLDDIEGAEKIYDEWLPVKVHYDPRIGNLLLGYYVRKGFVDKASAFFDQM
IGAGGKPNSMTCEILAEGHIRDRRISEALSCLKDAVSSEGSKSWRPKPATVSSILRLCEQ
EDDIQNKEVLLEVLKQVGCLDDEKYMSYIPLSNGSFTSSEREIEKDTSDNDEGSDILLNQ
LQESL*

Transcript Sequence

Transcript ID

Solyc01g089870.3.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GP78_POPTR)
Sequence

AACAGAAAATCAAGAACCCCTGAAGCTCAAAAACCCTAAAAAAAACCCCAAAAAATGCTT
CTACAACCCACCACCACCGTTAAACCTCCACATCAAAAAACTGAAAAGTATGTCTCTTTT
TCTTCGTCCCTATCTTATTCACTGTCTTTTCCATCTGGGTTTTGCAATTTGGGTGGTTTT
ACTAAACCCTTGATGTGTTCAAAGAATCATCATTCAGTTATTAGCTGTTCATCAACATCA
CAGGTGCATAGCTATGGGACTGTTGACTATGAGAGGCGGCCAATAGTGAAATGGAATGCT
ATTTACAAAAGAATATCTATGAATGATGGACCAGAAAGAGGCTCTGTTAGTGTGTTGAAT
CAGTGGGAAAATGAGGGGAAAAAGGTTACGAAATGGGAACTTTCTAGGGTCATTAAGGAG
CTAAGGAAGTTTAGGCGTTATAAGCTGGCTTTTGAGGTGTATGAGTGGATGAACAATAGA
CCAGAGAGGTTTAGACTAACCACCAGTGATACTGCTATTCAATTAGACCTGATAGCAAAA
GTACATGGAATATCAAGTGCTGAAGAATACTTTGATAAGTTGCCAGACACCTTAAAAGAT
AAGCGGATATATGGGTCTCTTTTAAATGCCTTTGTGCGGTCTAGAAAGAAGGAACAAGCT
GAATCTTTACTTGATAAAATGAGAAACAGAGGATACACTGATCATGCTCTTCCATTCAAT
GTGATGATGACACTCTATATGAACCTTAAAGACTACGACAAGGTTGAATCCGTGGTTTCA
GAAATGAAGGAGAAAAGAATTCCACTAGATATATATTCCTATAATATCTGGTTATCATCA
TGTGGATCTCAAGGATCTATTGAAAAAATGGAAAAGGTACTCGAACAAATGAATCTAGAC
ACTGATATCAATCCAAATTGGACTACATTTAGTACCATGGCTACTATGTACATTAAGTTG
GGGCAGATGAAAAAAGCTGAAGACTCTTTGAAAAGTGTTGAGAGCAGAATCACAGGCCGT
GATCGAATTCCATATCATTATCTCATCAGTCTCTATGGTAGTCTTGGTAAAAAGGAAGAC
GTTCTCCGAATCTGGAAAACCTACCAATCGCAGTTTCCAAATATTCCAAACCTGGGATAT
CATTCTGTAATATCTTCTCTGGTGAGGTTGGATGATATTGAAGGTGCAGAAAAAATATAT
GATGAGTGGCTACCTGTGAAGGTTCACTATGATCCTAGAATAGGAAATCTTTTATTGGGT
TATTACGTGAGGAAGGGTTTCGTGGACAAGGCTAGTGCTTTCTTTGACCAAATGATTGGA
GCTGGTGGAAAGCCAAACTCAATGACCTGCGAGATCCTTGCCGAAGGCCATATCAGGGAT
CGGAGGATATCAGAGGCTTTGTCATGCTTGAAGGATGCTGTTTCAAGTGAGGGATCAAAG
AGCTGGAGACCGAAACCTGCAACTGTATCTTCCATTCTCAGGCTTTGTGAGCAGGAAGAC
GATATACAAAATAAAGAAGTCCTGTTGGAGGTGTTGAAGCAAGTTGGGTGTCTTGACGAT
GAAAAGTACATGTCATATATTCCATTATCAAATGGTTCATTTACCAGTAGTGAGCGAGAA
ATAGAGAAGGATACATCTGATAACGATGAAGGATCTGACATACTGCTCAACCAGTTGCAA
GAAAGCTTGTGA