Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g088380.2.1
CDS Infomation

DNA replication helicase (AHRD V3.3 *** AT1G08840.4)
Sequence

ATGCCTCCAAAGAAAAGAACAAGTTCAGGATCAACAAAGAAATCAAGTATTCAAAACCAG
AATCTTCAGCAACAGCAGCAGCAATCTCAGCCGTCCAAATTCGGGATCCAGCATTTCTTT
GAACGCCACACCCAAAATGCACTCTCACAGAAATCCAAGTCCCTTCTTGTTCCCCACAAT
TCTAATTCCAATCCCAATTCATTGCAAAACCCTAAAGGAAGTTCTAGTGTATCAGTATCC
AAAACTCCTAGAAATGATTTAGAGTTAAGGTGTTTAGATTCTAATGAAACAAACTCCGTT
GCACAGAAAGGTGAAAATGGATTGGATTTCAATAAGTTTGATGAGGTTAAGCCAGTGTCA
CAAGTTAAAAGCAATGGAAATGTGGTCGAATCAGATAAAGTTGATGTAGCTGAGAGATTT
AAGGATAAAGAAAGCAGTGTTAGTTTGAAAAACAATGAATCGAGTAGTCCATCTCACAGT
ACACCTACTGAGATTGTGGTGGCTGCAGGTTCAGGGGAGGAGAGAAATGATGCAGAAGTA
ACGCCTGAGTTTTGCAAGTCTGTATCTTTGAACAAGCGATTCAAGTTTTCTCCAGGAATG
TTGATCAAGCAAAGCCAGGATGACGGAGGTGATGAAGTAACATGGAGAATATCTCCAGTG
AATGAACGACTACATGCCATGTCCAAACAATTACCAAAGATGGCAAAGGTGTTGGCGGAC
TCATCACGGTTCAACTCCTTAAATATTCAAGAATGTTCACTGAAAAAGATGCCTCCTGAG
ACAGAAATAAAGTTTGAGAAATGGCTCTGTTCACCTCCACCGAAGGCACTTGATAAATCA
TTAGTATGCTCAAAAACGGCTAGCATGAAAAACAAAAACACAGATCACACAATGGATTTG
TGGGAAAACAATGGAAACTCCAACTGCCAGAGCAAAACTGAAGTAATCAACAGTCAGAGT
CCTTTTCAGACTCCACCATCTTTGACATACGGCAGTGATAAGCCTGCCAACGTGGTTGAT
TCTAATGAAGCCAGTGATCAGTTTAGTTCCAGGCAACACAAAAAGGCATTGATTGAGCTT
TTAGACCAAGTAGAAGATGTAATTTCTGTTGAACCACAATGTGAAGAGAAAATCGCATCC
CATTGTCATGATGGACCAGCTAAGCCAACTGCCGTTTTGCAAAAATTGGCAGAAAACTTT
TGTTCAAGTGACCAAAGGAAAGAGTCAACTATCAATTTTCTTGTATTGGAGGTTTCTGAG
AAGCATGAACAAGTTGAAACATCTGGGCGACAGTGCTCCTTCAAGGTTTTGCGCTTGCTG
AATGAACAAGGTGGAGAAGAAAGAGTTTTACAATTGAGGGATGAGTGGTGCTATAGTGTT
GTTGCACCAGGGGATACTATTCATGTCATCGGTGAGTTTGACAGTGAAGGAAAATGTGAA
ATAAACCGCGGGAAGAATTTTCTCATTGTTCATCCAGATATTTTAGTTTCTGGAACCAGG
GTTGCTGGCAGCTTCAGTTGTTCAAGGCGAACTGTGCTGGATGAGAGGTTAAAATCTGGC
GAGTATTCAGCCGCAGCACTGATTGGCACATTATTACATCAGATGTTTCAGGCTGGGCTG
ATCAGAGAGTCTCCTACAAAAGAATTCTTGGAAGATTATGCAAGGGTAGTGCTCCAGAAG
AGTCTTGAGAGCCTATATGCATGTGGAGTTAATGAAAATGATACTCACAAGACATTGATT
GATGCAATTCCAAAACTGCTGAATTGGATACAGTCCTTCCAATACTCAGAGGTTTCAGAA
AGCCCAAGCATTGATTTTGGAAGTGAAGATGGAGCTAAGAAAATTAAAGTATCTGAAGTA
CTTGACATTGAAGAAATGGCATGGGCTCCAAAATATGGGTTGAAAGGCATGATCGATGCA
TCCTTGCTAGTAAATGTAAAATCAAACACCAATGTACCTAATGAGATGATTATGCCTCTT
GAATTTAAAACTGGGAAGGCAACAAATGGGCAGGCAACTATGGAACATAGTGCTCAAGTC
ATGTTGTATACCCTTTTAATGTCGGAAAGATACTTGCAGCATATTGGCCATGGTCTTCTG
TATTATCTGCACACAGATCAGACACAGGGAATAACTGTTAGCAGATCTGACTTGGTTGGC
CTAATAATGCGCCGTAATGAACTTGCAAATGATCTTCTCAAGGCTTCTATAACTCAACAA
TTGCCGCCAATGTTACAGAGTCCAAATATGTGCAGAGGCTGTCGCCACCTCAATGTCTGT
ACCATTTATCATAAGGCATACGGTGGCACCACAGAAGGCAGCGGCTTGGGCAGTGTGTTT
GATTCACTTGTTAGCCATCTAACAAATGAACATACTAATTTTCTTCAAAAATGGGATCAG
TTAGTTGACTTGGAGGCTAAAGAAGTTGAGGTTGTAAAGAAACAAATTTGGTCTTCACAA
AGTTTAAAGACTGACCTTTATGCTCCTTGTTTATCTTCTCTTGTCCTTGATACATCCGAA
AGATCCACACCATCAAACTTTAGCAAAGGAAATCAATTTACGTATCACTTTGTACATCGA
GATTGGACTTCCTTGGGCTTTCATCAACAGGATGGAGCTGCTCTGAACAGTTCCATTTTT
CCTGTCAAAAAATTTGAATCCTCGCTTAGGAACGGGGACTATGTGGTATTGAGCACTGAA
CCTAGTGGGATACTAATAGCTACCGGAGTTGTTGTAGATATGAGTTGCTCTAGCATCACG
GTATCTCTTTCCAAACGCTTAAGGCTACCAGGAAGTAGCCGGACTTCACAGGCACAAGAT
CTTCATCAGCAGTTGTGGCGAATTCATAAAGATGAATTCATGGGTTCATTTGCAATTATG
AGATTCAACCTCATACAACTGTTTCTGCAAAATGAGCAGAGTTCTCATCTGAGGAAGATG
ATAGTTGATCTGGAGGTGCCTAGGTTTGATAGTGGATGTCAATTTAGTCAAGATCCTGCC
ATTTCATACATTTGGTCACAAAAAAACTTGAATGATGATCAGCGAAGAGCCATACTTAAG
ATACTCACAGCAAAGGATTACGCGCTGATACTAGGAATGCCAGGGACAGGCAAAACATCC
ACTATGGTCTATGCTGTGAAGGCACTGTTGATGAGAGGTTCATCCATTTTGCTTACCTCC
TATACAAATTCAGCTGTTGACAATTTGCTTCTCAAACTGAAGTCTCAGGGTATTGATTTT
ATACGTATTGGAAGATATGAGGTTGTGCACGAGGAAGTTCGTGAGAATTGCTTATCAATG
ATGGACACTCATGGTCTTGAAGAGATAAAGCAGAGGCTAGAGCAAAGCAAAGTTGTTGCT
GTTACCTGTTTGGGGATTACTAGCCCATTGCTTTCAAACAAGAGATTTGATGTGTGTATC
ATGGATGAAGCTGGACAAACTACGTTGCCGGTATCATTGGGACCATTGACATTTGCATCA
AAATTTGTTCTAGTTGGGGATCATTATCAATTACCACCACTTGTCCAGAGTGCAGAAGCT
AGAGAATATGGAATGGCAGTTAGCCTGTTCTGCAGACTCTCAGAAGCTCATCCCCAAGCA
ATTTGTGCTTTGCAAAGCCAGTACCGCATGTGTGCAGCGATAATGGAATTATCAAATACC
TTGATATATGGTAACAGATTGCGATGTGGTTCTTCTGAAGTAGAAAATGCCAAAATCAAG
TACACAGGATTGCCATCTGGGCCTAAGTGGATAAAGGAGGCTATGAATCCAAACAGACCC
GTCATCTTTGTAAACACAGATTTGTTGCTTGCATTTGAAACAAATGACCGGAAAGCTGTT
AATAACCCAGTGGAAGCAAATATCATTGCCGAGATCGTGTGTAGATTGTTGAGCAGAGGT
ATATTGGAGGAAGATATAGGCATCATTACCCCCTACAATTCTCAGGCAGATCTGATCCGG
CAAGCTGTTTCCACATCAGTGGAGATACATACAATTGATAAATACCAGGGAAGAGATAAA
GATTGCATTCTGCTTTCCTTCGTAAGGTCAAGTGAGAATCCAAGGAACTACATTTCTTCA
TTGCTTGGAGACTGGCACAGGATTAACGTGGCTCTTACTCGTGCCAAGAAGAAGTTGATA
ATGGTAGGTTCATGCATTACGCTGTCGAATGTGCCTCTGCTTAAGCTTCTTATTGAGAAG
GTGGAAGAACAAGGTGGCATTTTAAGCGTCTCCAAGAAGGATATTGCTCATAAACCAGAA
TTGAGAAGATGCTCCAACCTGAGATGA

Peptide Sequence

PEP ID

Solyc01g088380.2.1
PEP Infomation

DNA replication helicase (AHRD V3.3 *** AT1G08840.4)
Sequence

MPPKKRTSSGSTKKSSIQNQNLQQQQQQSQPSKFGIQHFFERHTQNALSQKSKSLLVPHN
SNSNPNSLQNPKGSSSVSVSKTPRNDLELRCLDSNETNSVAQKGENGLDFNKFDEVKPVS
QVKSNGNVVESDKVDVAERFKDKESSVSLKNNESSSPSHSTPTEIVVAAGSGEERNDAEV
TPEFCKSVSLNKRFKFSPGMLIKQSQDDGGDEVTWRISPVNERLHAMSKQLPKMAKVLAD
SSRFNSLNIQECSLKKMPPETEIKFEKWLCSPPPKALDKSLVCSKTASMKNKNTDHTMDL
WENNGNSNCQSKTEVINSQSPFQTPPSLTYGSDKPANVVDSNEASDQFSSRQHKKALIEL
LDQVEDVISVEPQCEEKIASHCHDGPAKPTAVLQKLAENFCSSDQRKESTINFLVLEVSE
KHEQVETSGRQCSFKVLRLLNEQGGEERVLQLRDEWCYSVVAPGDTIHVIGEFDSEGKCE
INRGKNFLIVHPDILVSGTRVAGSFSCSRRTVLDERLKSGEYSAAALIGTLLHQMFQAGL
IRESPTKEFLEDYARVVLQKSLESLYACGVNENDTHKTLIDAIPKLLNWIQSFQYSEVSE
SPSIDFGSEDGAKKIKVSEVLDIEEMAWAPKYGLKGMIDASLLVNVKSNTNVPNEMIMPL
EFKTGKATNGQATMEHSAQVMLYTLLMSERYLQHIGHGLLYYLHTDQTQGITVSRSDLVG
LIMRRNELANDLLKASITQQLPPMLQSPNMCRGCRHLNVCTIYHKAYGGTTEGSGLGSVF
DSLVSHLTNEHTNFLQKWDQLVDLEAKEVEVVKKQIWSSQSLKTDLYAPCLSSLVLDTSE
RSTPSNFSKGNQFTYHFVHRDWTSLGFHQQDGAALNSSIFPVKKFESSLRNGDYVVLSTE
PSGILIATGVVVDMSCSSITVSLSKRLRLPGSSRTSQAQDLHQQLWRIHKDEFMGSFAIM
RFNLIQLFLQNEQSSHLRKMIVDLEVPRFDSGCQFSQDPAISYIWSQKNLNDDQRRAILK
ILTAKDYALILGMPGTGKTSTMVYAVKALLMRGSSILLTSYTNSAVDNLLLKLKSQGIDF
IRIGRYEVVHEEVRENCLSMMDTHGLEEIKQRLEQSKVVAVTCLGITSPLLSNKRFDVCI
MDEAGQTTLPVSLGPLTFASKFVLVGDHYQLPPLVQSAEAREYGMAVSLFCRLSEAHPQA
ICALQSQYRMCAAIMELSNTLIYGNRLRCGSSEVENAKIKYTGLPSGPKWIKEAMNPNRP
VIFVNTDLLLAFETNDRKAVNNPVEANIIAEIVCRLLSRGILEEDIGIITPYNSQADLIR
QAVSTSVEIHTIDKYQGRDKDCILLSFVRSSENPRNYISSLLGDWHRINVALTRAKKKLI
MVGSCITLSNVPLLKLLIEKVEEQGGILSVSKKDIAHKPELRRCSNLR*

Transcript Sequence

Transcript ID

Solyc01g088380.2.1
Transcript Infomation

DNA replication helicase (AHRD V3.3 *** AT1G08840.4)
Sequence

ATGCCTCCAAAGAAAAGAACAAGTTCAGGATCAACAAAGAAATCAAGTATTCAAAACCAG
AATCTTCAGCAACAGCAGCAGCAATCTCAGCCGTCCAAATTCGGGATCCAGCATTTCTTT
GAACGCCACACCCAAAATGCACTCTCACAGAAATCCAAGTCCCTTCTTGTTCCCCACAAT
TCTAATTCCAATCCCAATTCATTGCAAAACCCTAAAGGAAGTTCTAGTGTATCAGTATCC
AAAACTCCTAGAAATGATTTAGAGTTAAGGTGTTTAGATTCTAATGAAACAAACTCCGTT
GCACAGAAAGGTGAAAATGGATTGGATTTCAATAAGTTTGATGAGGTTAAGCCAGTGTCA
CAAGTTAAAAGCAATGGAAATGTGGTCGAATCAGATAAAGTTGATGTAGCTGAGAGATTT
AAGGATAAAGAAAGCAGTGTTAGTTTGAAAAACAATGAATCGAGTAGTCCATCTCACAGT
ACACCTACTGAGATTGTGGTGGCTGCAGGTTCAGGGGAGGAGAGAAATGATGCAGAAGTA
ACGCCTGAGTTTTGCAAGTCTGTATCTTTGAACAAGCGATTCAAGTTTTCTCCAGGAATG
TTGATCAAGCAAAGCCAGGATGACGGAGGTGATGAAGTAACATGGAGAATATCTCCAGTG
AATGAACGACTACATGCCATGTCCAAACAATTACCAAAGATGGCAAAGGTGTTGGCGGAC
TCATCACGGTTCAACTCCTTAAATATTCAAGAATGTTCACTGAAAAAGATGCCTCCTGAG
ACAGAAATAAAGTTTGAGAAATGGCTCTGTTCACCTCCACCGAAGGCACTTGATAAATCA
TTAGTATGCTCAAAAACGGCTAGCATGAAAAACAAAAACACAGATCACACAATGGATTTG
TGGGAAAACAATGGAAACTCCAACTGCCAGAGCAAAACTGAAGTAATCAACAGTCAGAGT
CCTTTTCAGACTCCACCATCTTTGACATACGGCAGTGATAAGCCTGCCAACGTGGTTGAT
TCTAATGAAGCCAGTGATCAGTTTAGTTCCAGGCAACACAAAAAGGCATTGATTGAGCTT
TTAGACCAAGTAGAAGATGTAATTTCTGTTGAACCACAATGTGAAGAGAAAATCGCATCC
CATTGTCATGATGGACCAGCTAAGCCAACTGCCGTTTTGCAAAAATTGGCAGAAAACTTT
TGTTCAAGTGACCAAAGGAAAGAGTCAACTATCAATTTTCTTGTATTGGAGGTTTCTGAG
AAGCATGAACAAGTTGAAACATCTGGGCGACAGTGCTCCTTCAAGGTTTTGCGCTTGCTG
AATGAACAAGGTGGAGAAGAAAGAGTTTTACAATTGAGGGATGAGTGGTGCTATAGTGTT
GTTGCACCAGGGGATACTATTCATGTCATCGGTGAGTTTGACAGTGAAGGAAAATGTGAA
ATAAACCGCGGGAAGAATTTTCTCATTGTTCATCCAGATATTTTAGTTTCTGGAACCAGG
GTTGCTGGCAGCTTCAGTTGTTCAAGGCGAACTGTGCTGGATGAGAGGTTAAAATCTGGC
GAGTATTCAGCCGCAGCACTGATTGGCACATTATTACATCAGATGTTTCAGGCTGGGCTG
ATCAGAGAGTCTCCTACAAAAGAATTCTTGGAAGATTATGCAAGGGTAGTGCTCCAGAAG
AGTCTTGAGAGCCTATATGCATGTGGAGTTAATGAAAATGATACTCACAAGACATTGATT
GATGCAATTCCAAAACTGCTGAATTGGATACAGTCCTTCCAATACTCAGAGGTTTCAGAA
AGCCCAAGCATTGATTTTGGAAGTGAAGATGGAGCTAAGAAAATTAAAGTATCTGAAGTA
CTTGACATTGAAGAAATGGCATGGGCTCCAAAATATGGGTTGAAAGGCATGATCGATGCA
TCCTTGCTAGTAAATGTAAAATCAAACACCAATGTACCTAATGAGATGATTATGCCTCTT
GAATTTAAAACTGGGAAGGCAACAAATGGGCAGGCAACTATGGAACATAGTGCTCAAGTC
ATGTTGTATACCCTTTTAATGTCGGAAAGATACTTGCAGCATATTGGCCATGGTCTTCTG
TATTATCTGCACACAGATCAGACACAGGGAATAACTGTTAGCAGATCTGACTTGGTTGGC
CTAATAATGCGCCGTAATGAACTTGCAAATGATCTTCTCAAGGCTTCTATAACTCAACAA
TTGCCGCCAATGTTACAGAGTCCAAATATGTGCAGAGGCTGTCGCCACCTCAATGTCTGT
ACCATTTATCATAAGGCATACGGTGGCACCACAGAAGGCAGCGGCTTGGGCAGTGTGTTT
GATTCACTTGTTAGCCATCTAACAAATGAACATACTAATTTTCTTCAAAAATGGGATCAG
TTAGTTGACTTGGAGGCTAAAGAAGTTGAGGTTGTAAAGAAACAAATTTGGTCTTCACAA
AGTTTAAAGACTGACCTTTATGCTCCTTGTTTATCTTCTCTTGTCCTTGATACATCCGAA
AGATCCACACCATCAAACTTTAGCAAAGGAAATCAATTTACGTATCACTTTGTACATCGA
GATTGGACTTCCTTGGGCTTTCATCAACAGGATGGAGCTGCTCTGAACAGTTCCATTTTT
CCTGTCAAAAAATTTGAATCCTCGCTTAGGAACGGGGACTATGTGGTATTGAGCACTGAA
CCTAGTGGGATACTAATAGCTACCGGAGTTGTTGTAGATATGAGTTGCTCTAGCATCACG
GTATCTCTTTCCAAACGCTTAAGGCTACCAGGAAGTAGCCGGACTTCACAGGCACAAGAT
CTTCATCAGCAGTTGTGGCGAATTCATAAAGATGAATTCATGGGTTCATTTGCAATTATG
AGATTCAACCTCATACAACTGTTTCTGCAAAATGAGCAGAGTTCTCATCTGAGGAAGATG
ATAGTTGATCTGGAGGTGCCTAGGTTTGATAGTGGATGTCAATTTAGTCAAGATCCTGCC
ATTTCATACATTTGGTCACAAAAAAACTTGAATGATGATCAGCGAAGAGCCATACTTAAG
ATACTCACAGCAAAGGATTACGCGCTGATACTAGGAATGCCAGGGACAGGCAAAACATCC
ACTATGGTCTATGCTGTGAAGGCACTGTTGATGAGAGGTTCATCCATTTTGCTTACCTCC
TATACAAATTCAGCTGTTGACAATTTGCTTCTCAAACTGAAGTCTCAGGGTATTGATTTT
ATACGTATTGGAAGATATGAGGTTGTGCACGAGGAAGTTCGTGAGAATTGCTTATCAATG
ATGGACACTCATGGTCTTGAAGAGATAAAGCAGAGGCTAGAGCAAAGCAAAGTTGTTGCT
GTTACCTGTTTGGGGATTACTAGCCCATTGCTTTCAAACAAGAGATTTGATGTGTGTATC
ATGGATGAAGCTGGACAAACTACGTTGCCGGTATCATTGGGACCATTGACATTTGCATCA
AAATTTGTTCTAGTTGGGGATCATTATCAATTACCACCACTTGTCCAGAGTGCAGAAGCT
AGAGAATATGGAATGGCAGTTAGCCTGTTCTGCAGACTCTCAGAAGCTCATCCCCAAGCA
ATTTGTGCTTTGCAAAGCCAGTACCGCATGTGTGCAGCGATAATGGAATTATCAAATACC
TTGATATATGGTAACAGATTGCGATGTGGTTCTTCTGAAGTAGAAAATGCCAAAATCAAG
TACACAGGATTGCCATCTGGGCCTAAGTGGATAAAGGAGGCTATGAATCCAAACAGACCC
GTCATCTTTGTAAACACAGATTTGTTGCTTGCATTTGAAACAAATGACCGGAAAGCTGTT
AATAACCCAGTGGAAGCAAATATCATTGCCGAGATCGTGTGTAGATTGTTGAGCAGAGGT
ATATTGGAGGAAGATATAGGCATCATTACCCCCTACAATTCTCAGGCAGATCTGATCCGG
CAAGCTGTTTCCACATCAGTGGAGATACATACAATTGATAAATACCAGGGAAGAGATAAA
GATTGCATTCTGCTTTCCTTCGTAAGGTCAAGTGAGAATCCAAGGAACTACATTTCTTCA
TTGCTTGGAGACTGGCACAGGATTAACGTGGCTCTTACTCGTGCCAAGAAGAAGTTGATA
ATGGTAGGTTCATGCATTACGCTGTCGAATGTGCCTCTGCTTAAGCTTCTTATTGAGAAG
GTGGAAGAACAAGGTGGCATTTTAAGCGTCTCCAAGAAGGATATTGCTCATAAACCAGAA
TTGAGAAGATGCTCCAACCTGAGATGATGATAAAGATATTGCATCCAATTTTGCGATTTG
CGGTCATGTAAATTAGGGCAAAATCTACTTCTCTAATGTAAATGTAAATATTGAGACCAC
ACCCCCGATTCTTTTGTAAAAAACAGAGAATTCTATTGAGAAATGAAGTTCAAGACCAAG
CCTATCAAAGAATGTCTGA