Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g087910.3.1
CDS Infomation

F-box family protein with WD40/YVTN repeat doamin (AHRD V3.3 *** AT3G52030.2)
Sequence

ATGGACCCCAGGGCAACGGCGCCAAAAATCCGGCAGCCGTCCACGACGGCTACGGCAACC
GTGAAGAACAAAAAGAAGAAGACAGCAGCAGAAGCTCTCGGCCACGACGTTCTCTGCATC
ATCTTCTCCTTTCTCGACTTAGTCCAGCTCATTCGCTGCTCCGCCGTTTCTACTTCTTGG
AGTAAAGCTGTCAACAAATTGAAGTTGCATCAAACAGAATACTTCAAGCAGCAGCATAGT
GGTCCTAATGGCCTCATTGACGCACCTTTCTCTCAGAGATCATTGAGTGAACAAGCGGAG
CAGCTAGCTATGGAACAACACAAATTGGCATTACAAAGGGGCCCTGCTAATGTTATTCAG
TGGAAAGGTCATTCAGTAGGGGTAAATCAGTGCAGAATGAAGATGGGAAAAGTCCTTACC
GGTGTGGGTGACAAGGTCATGCGTCTCTGGTCGGCAGAAAGCTGCAAATGTTTGGATGAA
TATTTCCTTGTCGATAAAGCCCCTTTAATTGATTTTGATTTTGACGAGGGCAAGGTTGTT
GGTTTGGTTGGCACCCGTATATGCATCTGGAATCGTACAGAGGAAAGAAACATATTTTCC
TCACGTGAGAACTTATTTACTAAGGCCCTCTGTATGCGTTATGTAGACCCCGAAGCTGTG
ATCGGATGTGAGGATGGAAAGGTTCGTGTATTTGACCTATACAGCAGAAAGTGTACCCAA
ATAATAAAGATGCATCAGGGGCCTGTTTCTTGCTTAGCTTTTACTGATGACCAATTGCTT
GTTAGTGGTTCTTCCCTCGGCTCCCTTTCACTCTCAGATCTTTCTTCTGATCAGCGAGTT
GTTCAGCTGGGATCAATCTACTCTGCAGGGGTCAAGACTTTGTGTTTCAACCCTAATTCC
TATATGGTGTTTGCTGGATCAACTGCTGGAAATGTGTCTTGTTGGGACCTCAGGAATACG
ACAAGAACTGTATGGGAAACAAGAGTTTCTCCAAATGTTATTTATTCTATGCATCACCTT
ATGAACGACACTTCGACATTGGTAGTTGGTGGAATCGATGGTGTGTTAAGAACTGTGGAC
CAGGTAACTGGTGAAGTAATTTCAAGATGCATAATGGATGATAGTACCACTGTGTTACAT
CGTTCAACAGAGAGATTTGGAAGTGTGCAAATTGATAGCCGGAAAGTGAAAAGGCTGTCT
GAAGATGATCGAATTGATCTTATGACAAGAACTTCCAAGCCACAAATCACATGTTTAGCA
GCTGGGATGGAGAAAGTTGTTACTACGCATAATGATAAGTATATCAGAGTTTGGAAATTC
AGCAAGTGA

Peptide Sequence

PEP ID

Solyc01g087910.3.1
PEP Infomation

F-box family protein with WD40/YVTN repeat doamin (AHRD V3.3 *** AT3G52030.2)
Sequence

MDPRATAPKIRQPSTTATATVKNKKKKTAAEALGHDVLCIIFSFLDLVQLIRCSAVSTSW
SKAVNKLKLHQTEYFKQQHSGPNGLIDAPFSQRSLSEQAEQLAMEQHKLALQRGPANVIQ
WKGHSVGVNQCRMKMGKVLTGVGDKVMRLWSAESCKCLDEYFLVDKAPLIDFDFDEGKVV
GLVGTRICIWNRTEERNIFSSRENLFTKALCMRYVDPEAVIGCEDGKVRVFDLYSRKCTQ
IIKMHQGPVSCLAFTDDQLLVSGSSLGSLSLSDLSSDQRVVQLGSIYSAGVKTLCFNPNS
YMVFAGSTAGNVSCWDLRNTTRTVWETRVSPNVIYSMHHLMNDTSTLVVGGIDGVLRTVD
QVTGEVISRCIMDDSTTVLHRSTERFGSVQIDSRKVKRLSEDDRIDLMTRTSKPQITCLA
AGMEKVVTTHNDKYIRVWKFSK*

Transcript Sequence

Transcript ID

Solyc01g087910.3.1
Transcript Infomation

F-box family protein with WD40/YVTN repeat doamin (AHRD V3.3 *** AT3G52030.2)
Sequence

TTACATAAAGCTTCAAATATATATGTTCAAAACTATAAATAACATCCTTAAAATTTAAAC
TAAGAATTTAAATTTTAACTATATTTTCAATCTCTCGATTTAAAATTTATGAGACTTGGA
AAACTAAAGTTTTAAAGGGTGGCTACGTCATGAATAGGCTAGGGGACTTGGAAAATAAAT
GAAAATACAAAAGCCTCACCTCTTCCGTCTTTGCCCACACAACCGGCGGACATACGAAAA
TGGACCCCAGGGCAACGGCGCCAAAAATCCGGCAGCCGTCCACGACGGCTACGGCAACCG
TGAAGAACAAAAAGAAGAAGACAGCAGCAGAAGCTCTCGGCCACGACGTTCTCTGCATCA
TCTTCTCCTTTCTCGACTTAGTCCAGCTCATTCGCTGCTCCGCCGTTTCTACTTCTTGGA
GTAAAGCTGTCAACAAATTGAAGTTGCATCAAACAGAATACTTCAAGCAGCAGCATAGTG
GTCCTAATGGCCTCATTGACGCACCTTTCTCTCAGAGATCATTGAGTGAACAAGCGGAGC
AGCTAGCTATGGAACAACACAAATTGGCATTACAAAGGGGCCCTGCTAATGTTATTCAGT
GGAAAGGTCATTCAGTAGGGGTAAATCAGTGCAGAATGAAGATGGGAAAAGTCCTTACCG
GTGTGGGTGACAAGGTCATGCGTCTCTGGTCGGCAGAAAGCTGCAAATGTTTGGATGAAT
ATTTCCTTGTCGATAAAGCCCCTTTAATTGATTTTGATTTTGACGAGGGCAAGGTTGTTG
GTTTGGTTGGCACCCGTATATGCATCTGGAATCGTACAGAGGAAAGAAACATATTTTCCT
CACGTGAGAACTTATTTACTAAGGCCCTCTGTATGCGTTATGTAGACCCCGAAGCTGTGA
TCGGATGTGAGGATGGAAAGGTTCGTGTATTTGACCTATACAGCAGAAAGTGTACCCAAA
TAATAAAGATGCATCAGGGGCCTGTTTCTTGCTTAGCTTTTACTGATGACCAATTGCTTG
TTAGTGGTTCTTCCCTCGGCTCCCTTTCACTCTCAGATCTTTCTTCTGATCAGCGAGTTG
TTCAGCTGGGATCAATCTACTCTGCAGGGGTCAAGACTTTGTGTTTCAACCCTAATTCCT
ATATGGTGTTTGCTGGATCAACTGCTGGAAATGTGTCTTGTTGGGACCTCAGGAATACGA
CAAGAACTGTATGGGAAACAAGAGTTTCTCCAAATGTTATTTATTCTATGCATCACCTTA
TGAACGACACTTCGACATTGGTAGTTGGTGGAATCGATGGTGTGTTAAGAACTGTGGACC
AGGTAACTGGTGAAGTAATTTCAAGATGCATAATGGATGATAGTACCACTGTGTTACATC
GTTCAACAGAGAGATTTGGAAGTGTGCAAATTGATAGCCGGAAAGTGAAAAGGCTGTCTG
AAGATGATCGAATTGATCTTATGACAAGAACTTCCAAGCCACAAATCACATGTTTAGCAG
CTGGGATGGAGAAAGTTGTTACTACGCATAATGATAAGTATATCAGAGTTTGGAAATTCA
GCAAGTGAAAAACGATTCTCATACACTGCCTGATACTTGCTCGTATATGTATTTCCCTAT
GTAAACGTATTTCTA