Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g087650.3.1
CDS Infomation

Conserved oligomeric Golgi complex component (AHRD V3.3 *** F8WL71_CITUN)
Sequence

ATGTCGATGGATTCCGAAGATCCGATGGACGAAGCTTCACCGGTCACCGGACTTCTCCCA
CTGGCGTCGGCTGCACAACAACCTTACATCTCCGAACTCCTTTCTTTCACTCTCGATCGT
CTTCACAAAGAACCGGAGCTTCTGAGAGTGGATGCGGAGAGAATTCGGAGGCAGATGCAA
GAGGTTGCCGTTGGAAACTACCGTGCCTTCATTTCTGCTGCTGATGCACTACATGCGATT
CGGGAAGAAGTTTCTTCTGTTGATAAGCATCTTGACTCCTTGCTCAATGAGATACCTAAG
CTAACTTCAGGTTGCAGTGAGTTCAGCACCTCTGCAGAACATATCTTGGAGAAAAGGAAG
ATGAATCAAACATTGCTTGCAAACCATAGTACTCTGCTTGACTTGCTTGAAATTCCTCAG
CTAATGGACACATGTGTGAGAAATGGAAACTATGATGAAGCTCTTGATTTAGAAGCATTT
GTTTCCAAGCTTTCAGCAATGCACCCCAAGTTACCAGTCATTCAAGCCCTTGCTGCAGAA
GTCCGGCAGACCACCCAATCTCTTCTTTCTCAGCTTCTCCAAAGACTTAGGTCAAACATT
CAGTTGCCAGAATGCCTGCGTATCATTGGATACTTGCGTCGTATAGGGGTGTTCAATGAG
TATGAGATGCGCTTACAGTTTCTAAGGTGCCGTCAGGCATGGCTTTCTGGGATCCTTGAT
GACTTGGACCAGAGAAATGCTTATGAATACCTCAAAGGGATGGTAAATTGTCATCGGATG
CATCTCTTTGATGTTGTTAACCAGTACCGTGCGATATTTGCTGATGATACTTCCGGAAGG
GAAGAAAACTATGATGGTGGGCTTCTCTTCAGTTGGGCCATGCATCAAATTTCTTCCCAC
CTTAGAACTTTAAAGATGATGCTACCGAAGATCACTGAAGGAGGTTCTTTATCAAACATT
CTTGATCAATGCATGGTGAGCATATATATTTGTGCTAGGCAGTATTGTGCTATGGGCCTT
GGTTGGGTTGGATTGGACTTCCGCGGCTTGCTTCCCCCTCTTTTTGAAGAGGTGGTCCTA
AATCTGTTTTCAAAGAACATGAATGCAGCTGTTGAGAATTTCCAGTTGGTCCTTGATTCT
CATCGCTGGGTTCCATTACCAGCAGTCGGCTTTCCTACCAGCAGTTTGAGTGAAGAAAGT
CATGAAGATGTTACTCCTCCCTCAAGTCTAATGGAGCACCCACCTCTGGCTGTCTTTGTT
AATGGTGTCTCTGTGGCAATGAATGAGTTACGACCTTGCGCTCCCTTGAGTTTAAAACAT
GTGCTTGCACAAGAACTGGTTAAAGGATTGCAGGGTGTTTCTGATGCTTTACTGAGATAT
AACACTACGCGCATGCTTCGGGAAAATGAATCTCTCCTTTTCCTATCACTATGTCGAGCA
TTTATTGAGGTTGCTTTCCCACACAGTGTTACTTGTTTTGGTCGTTGTTATCCGGGTGGA
GCTGCTCTTATAGCCGATGCCACAACTCTATTCGATGGAATTAGCCGATTATTGGCAACC
TCTTCAGGATCCTCCAGAGAAGTTCCAAAACCAGTTGGTAATTCAGAGGCCAACAGTACA
TCAGAAAATGGCGACGCACCTAAGAAGGAAAATGGGGAAATTCCTAGTAGTGAACAACCC
GAGAGTAGGAACGCAGAAGAGGAACCCAATAATGTCCCCTCAGAAAACGAGGAGAAGCCT
GGTAATTTATCATCATGA

Peptide Sequence

PEP ID

Solyc01g087650.3.1
PEP Infomation

Conserved oligomeric Golgi complex component (AHRD V3.3 *** F8WL71_CITUN)
Sequence

MSMDSEDPMDEASPVTGLLPLASAAQQPYISELLSFTLDRLHKEPELLRVDAERIRRQMQ
EVAVGNYRAFISAADALHAIREEVSSVDKHLDSLLNEIPKLTSGCSEFSTSAEHILEKRK
MNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVSKLSAMHPKLPVIQALAAE
VRQTTQSLLSQLLQRLRSNIQLPECLRIIGYLRRIGVFNEYEMRLQFLRCRQAWLSGILD
DLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGREENYDGGLLFSWAMHQISSH
LRTLKMMLPKITEGGSLSNILDQCMVSIYICARQYCAMGLGWVGLDFRGLLPPLFEEVVL
NLFSKNMNAAVENFQLVLDSHRWVPLPAVGFPTSSLSEESHEDVTPPSSLMEHPPLAVFV
NGVSVAMNELRPCAPLSLKHVLAQELVKGLQGVSDALLRYNTTRMLRENESLLFLSLCRA
FIEVAFPHSVTCFGRCYPGGAALIADATTLFDGISRLLATSSGSSREVPKPVGNSEANST
SENGDAPKKENGEIPSSEQPESRNAEEEPNNVPSENEEKPGNLSS*

Transcript Sequence

Transcript ID

Solyc01g087650.3.1
Transcript Infomation

Conserved oligomeric Golgi complex component (AHRD V3.3 *** F8WL71_CITUN)
Sequence

TATTCTTTTTATAGTATTAGAGGGACTAAGTGGCAAATTCTCCGTCAGGGAAAATTTAAT
TCCGAATAGTATCTTTAATTGCATTCAGGGACAAAAAGTTTTGCCACTGAACAAATAACT
TCTTAAAATCTGGCAAAATTTCATTTTTACACTAATTGTAATTTTTTTTATAAGTGATAA
TTTCTCCGGCACCCGCGACTTAACAGTAGATCCTCCCTGAAATTCCAGATCTCATACATT
CTCGGCTTCGTCTCAGCAATGTCGATGGATTCCGAAGATCCGATGGACGAAGCTTCACCG
GTCACCGGACTTCTCCCACTGGCGTCGGCTGCACAACAACCTTACATCTCCGAACTCCTT
TCTTTCACTCTCGATCGTCTTCACAAAGAACCGGAGCTTCTGAGAGTGGATGCGGAGAGA
ATTCGGAGGCAGATGCAAGAGGTTGCCGTTGGAAACTACCGTGCCTTCATTTCTGCTGCT
GATGCACTACATGCGATTCGGGAAGAAGTTTCTTCTGTTGATAAGCATCTTGACTCCTTG
CTCAATGAGATACCTAAGCTAACTTCAGGTTGCAGTGAGTTCAGCACCTCTGCAGAACAT
ATCTTGGAGAAAAGGAAGATGAATCAAACATTGCTTGCAAACCATAGTACTCTGCTTGAC
TTGCTTGAAATTCCTCAGCTAATGGACACATGTGTGAGAAATGGAAACTATGATGAAGCT
CTTGATTTAGAAGCATTTGTTTCCAAGCTTTCAGCAATGCACCCCAAGTTACCAGTCATT
CAAGCCCTTGCTGCAGAAGTCCGGCAGACCACCCAATCTCTTCTTTCTCAGCTTCTCCAA
AGACTTAGGTCAAACATTCAGTTGCCAGAATGCCTGCGTATCATTGGATACTTGCGTCGT
ATAGGGGTGTTCAATGAGTATGAGATGCGCTTACAGTTTCTAAGGTGCCGTCAGGCATGG
CTTTCTGGGATCCTTGATGACTTGGACCAGAGAAATGCTTATGAATACCTCAAAGGGATG
GTAAATTGTCATCGGATGCATCTCTTTGATGTTGTTAACCAGTACCGTGCGATATTTGCT
GATGATACTTCCGGAAGGGAAGAAAACTATGATGGTGGGCTTCTCTTCAGTTGGGCCATG
CATCAAATTTCTTCCCACCTTAGAACTTTAAAGATGATGCTACCGAAGATCACTGAAGGA
GGTTCTTTATCAAACATTCTTGATCAATGCATGGTGAGCATATATATTTGTGCTAGGCAG
TATTGTGCTATGGGCCTTGGTTGGGTTGGATTGGACTTCCGCGGCTTGCTTCCCCCTCTT
TTTGAAGAGGTGGTCCTAAATCTGTTTTCAAAGAACATGAATGCAGCTGTTGAGAATTTC
CAGTTGGTCCTTGATTCTCATCGCTGGGTTCCATTACCAGCAGTCGGCTTTCCTACCAGC
AGTTTGAGTGAAGAAAGTCATGAAGATGTTACTCCTCCCTCAAGTCTAATGGAGCACCCA
CCTCTGGCTGTCTTTGTTAATGGTGTCTCTGTGGCAATGAATGAGTTACGACCTTGCGCT
CCCTTGAGTTTAAAACATGTGCTTGCACAAGAACTGGTTAAAGGATTGCAGGGTGTTTCT
GATGCTTTACTGAGATATAACACTACGCGCATGCTTCGGGAAAATGAATCTCTCCTTTTC
CTATCACTATGTCGAGCATTTATTGAGGTTGCTTTCCCACACAGTGTTACTTGTTTTGGT
CGTTGTTATCCGGGTGGAGCTGCTCTTATAGCCGATGCCACAACTCTATTCGATGGAATT
AGCCGATTATTGGCAACCTCTTCAGGATCCTCCAGAGAAGTTCCAAAACCAGTTGGTAAT
TCAGAGGCCAACAGTACATCAGAAAATGGCGACGCACCTAAGAAGGAAAATGGGGAAATT
CCTAGTAGTGAACAACCCGAGAGTAGGAACGCAGAAGAGGAACCCAATAATGTCCCCTCA
GAAAACGAGGAGAAGCCTGGTAATTTATCATCATGATGATGCATTTTGAAAGTCAGTTTA
TATTATTAATGATGAAATACTAAAAAGACTCAGATATATGCTTTTTTTTCCTTTTCAATT
GTGATTGTGGCTGATTCATTTTGATCACATGGGCTTGTAACATATTTGAGAATATAAGAG
CACATGTATGGAAAAAAACCTAATAAGAGCAGCGTGATACAAAAATATACCATAAATTAA
CCTATTCTTATTTCCCTATAATGTCGGAGTTTAGACATAAACG