Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g086690.2.1
CDS Infomation

LOW QUALITY:Sister chromatid cohesion 1 protein 3 (AHRD V3.3 *** W9R9I5_9ROSA)
Sequence

ATGTTTTATTCGCACACATTCTTGGCTCGGAAGGGTCCATTAGGGACTGTATGGTGCGCT
GCACACTTGCAACACAAGTTGAAGAAGCCTCATTATACTTCTACTAACATTCCATCTACT
GTTGAGCGCATCATGACTCCTGAAGTACCTATTGCACTGCGAACATCTGGCCATCTTCTA
CTTGGAGTTGTTCGGATATACTCGAAGCAGGTTGAATACTTTTCCGAGGACTGCAAAACA
CTACTAATGGGAGTTATAAAGGCCTTCTCGTCTACAAATGTCAATCTCCCAGAAGATGCC
ACTCATGCACCATACAGCTCCATCACTTTACCAGAAACATTTGAACTTGATGCCGTCGTT
TTTGATGAAGATCTTGACCTGAATAGGATTAAGGATACTCATGTTAAAAGTTACGAAGAG
ATAACTTTGGAAGATCAAGTTGTATCGCATGAAGATCAGTATGTTGCTATTTTCATTGAT
GAGGACATAGTGAAGAGTTTGTCAAAATCAGGTGAAGTTTCTGGATTAGGTTCCATGCCT
ATGGAGATAGATTCTGATCCTTCAAATTTAGATGAAACTGCTGCTCAACCCCAACATTCT
TCCCCTAAGAATCAGGAAGGACTAAACAAAAGAACTGTTGGTGATGACATCCCTCAAGAT
TTTCCAGATATTGAACTCATGCGTGACGCTGTCCATGATCACAGTTTTGAGAATGTTCCC
TTGTGGTCTGACCGAGGGAATGATGTGATGGAACCAGATAGAGTTCTGGAGGAACAGATC
ATGAGAGACAAGGAAACTGCAAGTCCAGTTGTGAAAGAGATATTGGCCCCCGGAGGACAT
TCAATCCCATCTCAACAACGACAAGAACCACCATCAACTACTTCAGCGGATGCTCATGAA
TTTGCTGATCCACAGATATCATTTGGGCATCAGTCACCTGATTTAGCACTTCTTTCAACA
CCTCCTCTCGAGGTGCCAAAAATAAGAAGAAAGCGAAAGCTACTCATCTATGATAAGGAC
ATAGTATTGCCAAATAATGAGATGAAAAGGAGACTAAAGGGCATCGGTATAAAATCACGC
GAAAAGAAGAAGGTTCCTTGTTTTTCTTTGGACATCTGGAAACAAAACCAGAGACTAAGA
AAAGATGGAATTTTCTTTGAGCCTTTAATTACTGGATTATGCGATGATCTTTGCAATATC
TACAAAAAAGACTTCATTTCCGCAAAAGTCCAGATGGCTTCCCCACAGGAAGCCCCTCCA
TCTGGGAATGATCTTCCGGTGGAAATTGAAAGATTACGTGATAACCAAGACCTTGCAAGC
ACTAGTTTGCTGTCTGAGATTTTGCCTTCACCAAATAGGCCTATTTCCTCTCCACAGATG
TCTATGCCTTCCCCAAGTAGGCTCATTTCTTCTCCACTGATGTCCATGCCTTCCACAAGC
AGAAGAGATGACTTCAGTCCTGCTACTACAACTTTAGGGACAGAATCTAGTCAGATAGGA
AGAACCATAGATAGTGGGGTGCAGCCCACGCCCGACCCAGCAGCATCTACTGGGCATGTT
GGTTCTCATATGGAGACCCCTTCAACATGGTTTGGAGAAGGACTAGGTGTGGAGGATACT
GTCTTATCTGATATTCCTGAGTTTGATAATTCTGCTGGGGATCTAAGTTTTCTAGAACAA
GATGACGACACTCCTATTGGACTTCGAGGAACTCCTTTATCAAGTAAGCAAAGGGGAACG
CCAGAGTTTGACACATTATCTGCTAGGACAAGAGCTGTGGCTCAATATTTGAAGGGGCAG
TCACCAGTAACCCTCATCTCAGAAGAGACAGGAGATATCAGCTTAAATGCAATTTTAGAA
GGCAAAAAGAAAAGAATATGCGCCCGGATGTTTTATGAGACTCTGGTGTTGGAGAATTGT
GGACTTGTACGTGCAAATCAACATGAACCTTATGGTGATATAACTCTGAAAGTGACTTCC
AAACTGACGGAGAAATTTTCAAGCTGA

Peptide Sequence

PEP ID

Solyc01g086690.2.1
PEP Infomation

LOW QUALITY:Sister chromatid cohesion 1 protein 3 (AHRD V3.3 *** W9R9I5_9ROSA)
Sequence

MFYSHTFLARKGPLGTVWCAAHLQHKLKKPHYTSTNIPSTVERIMTPEVPIALRTSGHLL
LGVVRIYSKQVEYFSEDCKTLLMGVIKAFSSTNVNLPEDATHAPYSSITLPETFELDAVV
FDEDLDLNRIKDTHVKSYEEITLEDQVVSHEDQYVAIFIDEDIVKSLSKSGEVSGLGSMP
MEIDSDPSNLDETAAQPQHSSPKNQEGLNKRTVGDDIPQDFPDIELMRDAVHDHSFENVP
LWSDRGNDVMEPDRVLEEQIMRDKETASPVVKEILAPGGHSIPSQQRQEPPSTTSADAHE
FADPQISFGHQSPDLALLSTPPLEVPKIRRKRKLLIYDKDIVLPNNEMKRRLKGIGIKSR
EKKKVPCFSLDIWKQNQRLRKDGIFFEPLITGLCDDLCNIYKKDFISAKVQMASPQEAPP
SGNDLPVEIERLRDNQDLASTSLLSEILPSPNRPISSPQMSMPSPSRLISSPLMSMPSTS
RRDDFSPATTTLGTESSQIGRTIDSGVQPTPDPAASTGHVGSHMETPSTWFGEGLGVEDT
VLSDIPEFDNSAGDLSFLEQDDDTPIGLRGTPLSSKQRGTPEFDTLSARTRAVAQYLKGQ
SPVTLISEETGDISLNAILEGKKKRICARMFYETLVLENCGLVRANQHEPYGDITLKVTS
KLTEKFSS*

Transcript Sequence

Transcript ID

Solyc01g086690.2.1
Transcript Infomation

LOW QUALITY:Sister chromatid cohesion 1 protein 3 (AHRD V3.3 *** W9R9I5_9ROSA)
Sequence

TGAGGAGCCGAAGAGAATTAGGTCATTGGAGAATCCTCTGAACTGAAAAGGGTCGCCGCC
GTTCGCCGCCAATCACCATTAATCGCCGCCAATCGCCATCAATCGCCGTTCTTGGTTGTT
AATTTGTTGACGGAGAAATGTTTTATTCGCACACATTCTTGGCTCGGAAGGGTCCATTAG
GGACTGTATGGTGCGCTGCACACTTGCAACACAAGTTGAAGAAGCCTCATTATACTTCTA
CTAACATTCCATCTACTGTTGAGCGCATCATGACTCCTGAAGTACCTATTGCACTGCGAA
CATCTGGCCATCTTCTACTTGGAGTTGTTCGGATATACTCGAAGCAGGTTGAATACTTTT
CCGAGGACTGCAAAACACTACTAATGGGAGTTATAAAGGCCTTCTCGTCTACAAATGTCA
ATCTCCCAGAAGATGCCACTCATGCACCATACAGCTCCATCACTTTACCAGAAACATTTG
AACTTGATGCCGTCGTTTTTGATGAAGATCTTGACCTGAATAGGATTAAGGATACTCATG
TTAAAAGTTACGAAGAGATAACTTTGGAAGATCAAGTTGTATCGCATGAAGATCAGTATG
TTGCTATTTTCATTGATGAGGACATAGTGAAGAGTTTGTCAAAATCAGGTGAAGTTTCTG
GATTAGGTTCCATGCCTATGGAGATAGATTCTGATCCTTCAAATTTAGATGAAACTGCTG
CTCAACCCCAACATTCTTCCCCTAAGAATCAGGAAGGACTAAACAAAAGAACTGTTGGTG
ATGACATCCCTCAAGATTTTCCAGATATTGAACTCATGCGTGACGCTGTCCATGATCACA
GTTTTGAGAATGTTCCCTTGTGGTCTGACCGAGGGAATGATGTGATGGAACCAGATAGAG
TTCTGGAGGAACAGATCATGAGAGACAAGGAAACTGCAAGTCCAGTTGTGAAAGAGATAT
TGGCCCCCGGAGGACATTCAATCCCATCTCAACAACGACAAGAACCACCATCAACTACTT
CAGCGGATGCTCATGAATTTGCTGATCCACAGATATCATTTGGGCATCAGTCACCTGATT
TAGCACTTCTTTCAACACCTCCTCTCGAGGTGCCAAAAATAAGAAGAAAGCGAAAGCTAC
TCATCTATGATAAGGACATAGTATTGCCAAATAATGAGATGAAAAGGAGACTAAAGGGCA
TCGGTATAAAATCACGCGAAAAGAAGAAGGTTCCTTGTTTTTCTTTGGACATCTGGAAAC
AAAACCAGAGACTAAGAAAAGATGGAATTTTCTTTGAGCCTTTAATTACTGGATTATGCG
ATGATCTTTGCAATATCTACAAAAAAGACTTCATTTCCGCAAAAGTCCAGATGGCTTCCC
CACAGGAAGCCCCTCCATCTGGGAATGATCTTCCGGTGGAAATTGAAAGATTACGTGATA
ACCAAGACCTTGCAAGCACTAGTTTGCTGTCTGAGATTTTGCCTTCACCAAATAGGCCTA
TTTCCTCTCCACAGATGTCTATGCCTTCCCCAAGTAGGCTCATTTCTTCTCCACTGATGT
CCATGCCTTCCACAAGCAGAAGAGATGACTTCAGTCCTGCTACTACAACTTTAGGGACAG
AATCTAGTCAGATAGGAAGAACCATAGATAGTGGGGTGCAGCCCACGCCCGACCCAGCAG
CATCTACTGGGCATGTTGGTTCTCATATGGAGACCCCTTCAACATGGTTTGGAGAAGGAC
TAGGTGTGGAGGATACTGTCTTATCTGATATTCCTGAGTTTGATAATTCTGCTGGGGATC
TAAGTTTTCTAGAACAAGATGACGACACTCCTATTGGACTTCGAGGAACTCCTTTATCAA
GTAAGCAAAGGGGAACGCCAGAGTTTGACACATTATCTGCTAGGACAAGAGCTGTGGCTC
AATATTTGAAGGGGCAGTCACCAGTAACCCTCATCTCAGAAGAGACAGGAGATATCAGCT
TAAATGCAATTTTAGAAGGCAAAAAGAAAAGAATATGCGCCCGGATGTTTTATGAGACTC
TGGTGTTGGAGAATTGTGGACTTGTACGTGCAAATCAACATGAACCTTATGGTGATATAA
CTCTGAAAGTGACTTCCAAACTGACGGAGAAATTTTCAAGCTGAGACCATTGTGTAGAAC
TATATATAAAGTTAAAACATTTGTACAGAGATGCAGCGGTCATGAAGATGTATAATCCTG
GCAGGCATTTTGTCTAAACTATTATGCATTACTAAGTGATTTAAGTTATACAGAACAAGG
TGGAAGTGACATCCGTGATGAATATAATAATCGC