Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g081490.3.1
CDS Infomation

Sigma factor (AHRD V3.3 *** A0A0G2STP3_9ROSI)
Sequence

ATGTCTTACTTATTGCCACAGTTCCTGAGCTTGCCGGATGCTTTTGTCATTTGCGCTAAA
ACCCAACAGCAGACCACTATCCAGCTTTCAAAAAGTAGAGACAGTATTCATTTGAGGACA
CAATGCATCCTATCCACTACATCTGCAGTAACATCAACAGCAACATCTACTGTGCTTGGC
ATTGAGAAACTACAGTTACCATCTATTGAAATCCTCTCAAATTCAGTCGCAGCAGAGAGA
TCATGGAAATCACCATCAGCTGCCACAACCACAGTACCTGGTATACAGAAGCTAAAGTTG
CCATCTTTTGAGGCCAACCCAGATTCAGTTGCCCCAGATAGGCCATGGACATACACTGGA
GCAGTTGGTCCACCTGCAGAGGCGAACACTAAACCTGAAGATTCTCTTGCTAGTGAGGAA
GCTATTGTAGCTGCTGCAGCCGCTGAAGCAGTTGCTTTAGCAAAGGCTGCATTGAAGGGT
GCACAAGATGCTGTAATGCTGGTCGGCTATAATAATTTAAAGGACTCCGATAATGTCGGC
AGAGGTACTCTATCAGAAGCTAGGACTGCTCCATTTGAGAGTGTTCATCTGGCTCAACCT
GGTGAGACAAGGGGAGTTGGTGTTTGTGCAGAATTAAATGGAAGTGAGATGAAGTGGACT
GGAAGTAGTTTATTCCGGGACACACTTACAGATTCTGATGACTTGGAGCCATCACATGAA
GAACTGGAAATTCTTCAGTCACAGCTGTCGAATGTCATAGCTGTAAAATCAAATCGTCAA
ACTGAGCGGAAGGCCAGAAGAGCTAAAGCAGTAGAGAGGGCTGCAGCCAATGTTGTGTCT
GTGAAGTCTGGTTCTACCAGTCGAAAGAAGCGTGCTTCAGTACAAGATGTTGATTACTCA
GATCCATTGCGTTACTTGAGAGGAACTACATGTAGTTCGAGGCTACTGACTGCATCTGAA
GAGCAGGAGTTATCGAGAGGAATACAGGACCTGTTGAAGTTGGAAAGACTTCAGGTGGAG
CTTACAGAGCGTTGCGGAGGTCAGCCCACTTTTACCCAATGGGCTGCTGCTGCCGGAGTT
GACCAGATGACCCTAAGAAAGCGTTTGAACTATGGCATTCTTTGTAAAGATAAAATGATT
AAGAGCAACGTGAGGCTCGTTATTTCTATTGCCAAAAATTATCAAGGAGTAGGGATGAAC
CTTCAAGATTTGGTTCAGGAAGGATGTCGGGGCCTCGTAAGAGGAGCTGAAAAATTTGAT
GCCACCAAGGGTTTTAAGTTCTCAACTTATGCTCACTGGTGGATTAAGCAGGCTGTTAGG
AAATCTCTCTCTGATCAGTCCAGGACGATTAGGTTGCCATTTCACATGGTCGAGGCTACT
TATAGAGTTAAGGAAGCAAGAAAGCAATTGTTGACTGAAAATGGTAGACATCCTAACGAT
GCAGAGGTAGCAGAAGCAACAGGGTTGTCAATGAAGAGACTCGCTGCTGTGATGTTAACT
CCTAAAGCTCCAAGATCACTTGACCAGAAAGTTGGGTTCAATGAAAGTCTCAAACCTTCG
GAAGTGCTTGCAGACCCTGACGCGGAAACATCAGAAGAAATACTGACCAAGCAGTTCATG
AGACAGGACCTGGAGAAGGTATTAGACACCTTAAATCCAAGGGAGAAGCAGGTCGTTAGA
TGGCGATTTGGACTAGAGGATGGCAGGATGAAGACGTTACAAGAAATTGGTGAGTTAATG
GGCGTTAGCCGGGAGAGAATTCGCCAAATAGAGTCTTGTGCATTCCGTAAGTTGAAGAAC
AAGAAAAGAACAAAGTTTTTGCAGCAATATATAAATGCTTAA

Peptide Sequence

PEP ID

Solyc01g081490.3.1
PEP Infomation

Sigma factor (AHRD V3.3 *** A0A0G2STP3_9ROSI)
Sequence

MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDSIHLRTQCILSTTSAVTSTATSTVLG
IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPGIQKLKLPSFEANPDSVAPDRPWTYTG
AVGPPAEANTKPEDSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLKDSDNVG
RGTLSEARTAPFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDLEPSHE
ELEILQSQLSNVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQDVDYS
DPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGV
DQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFD
ATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGRHPND
AEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILTKQFM
RQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN
KKRTKFLQQYINA*

Transcript Sequence

Transcript ID

Solyc01g081490.3.1
Transcript Infomation

Sigma factor (AHRD V3.3 *** A0A0G2STP3_9ROSI)
Sequence

GCTTCGTTGTCCCTTTCTCCTGTTCAAGAATCCAGAGGCTAAGTTCTCTTATCCTTCTAT
TTATCATTTTCCAACAAACACATCTCTTCTCTTTCTCCATTTTCTTCTTCAATCTCTGCT
GTTACACTCTTCTTCTCTTTCAATACATTTTCTGGGTTTAATTTTAACCCCATTTTTCAA
GATTATAACTCACTGATGGTGAAAAGTTTGCTGCTTTATTGACTGATTAATCTTTGAGAA
TATGGTGTGTAAATTAGTGTCTATTTTATGAGACCCCATATGCTTGTATATGAATTTAGA
GTAGAAAGAAGATGTCTTACTTATTGCCACAGTTCCTGAGCTTGCCGGATGCTTTTGTCA
TTTGCGCTAAAACCCAACAGCAGACCACTATCCAGCTTTCAAAAAGTAGAGACAGTATTC
ATTTGAGGACACAATGCATCCTATCCACTACATCTGCAGTAACATCAACAGCAACATCTA
CTGTGCTTGGCATTGAGAAACTACAGTTACCATCTATTGAAATCCTCTCAAATTCAGTCG
CAGCAGAGAGATCATGGAAATCACCATCAGCTGCCACAACCACAGTACCTGGTATACAGA
AGCTAAAGTTGCCATCTTTTGAGGCCAACCCAGATTCAGTTGCCCCAGATAGGCCATGGA
CATACACTGGAGCAGTTGGTCCACCTGCAGAGGCGAACACTAAACCTGAAGATTCTCTTG
CTAGTGAGGAAGCTATTGTAGCTGCTGCAGCCGCTGAAGCAGTTGCTTTAGCAAAGGCTG
CATTGAAGGGTGCACAAGATGCTGTAATGCTGGTCGGCTATAATAATTTAAAGGACTCCG
ATAATGTCGGCAGAGGTACTCTATCAGAAGCTAGGACTGCTCCATTTGAGAGTGTTCATC
TGGCTCAACCTGGTGAGACAAGGGGAGTTGGTGTTTGTGCAGAATTAAATGGAAGTGAGA
TGAAGTGGACTGGAAGTAGTTTATTCCGGGACACACTTACAGATTCTGATGACTTGGAGC
CATCACATGAAGAACTGGAAATTCTTCAGTCACAGCTGTCGAATGTCATAGCTGTAAAAT
CAAATCGTCAAACTGAGCGGAAGGCCAGAAGAGCTAAAGCAGTAGAGAGGGCTGCAGCCA
ATGTTGTGTCTGTGAAGTCTGGTTCTACCAGTCGAAAGAAGCGTGCTTCAGTACAAGATG
TTGATTACTCAGATCCATTGCGTTACTTGAGAGGAACTACATGTAGTTCGAGGCTACTGA
CTGCATCTGAAGAGCAGGAGTTATCGAGAGGAATACAGGACCTGTTGAAGTTGGAAAGAC
TTCAGGTGGAGCTTACAGAGCGTTGCGGAGGTCAGCCCACTTTTACCCAATGGGCTGCTG
CTGCCGGAGTTGACCAGATGACCCTAAGAAAGCGTTTGAACTATGGCATTCTTTGTAAAG
ATAAAATGATTAAGAGCAACGTGAGGCTCGTTATTTCTATTGCCAAAAATTATCAAGGAG
TAGGGATGAACCTTCAAGATTTGGTTCAGGAAGGATGTCGGGGCCTCGTAAGAGGAGCTG
AAAAATTTGATGCCACCAAGGGTTTTAAGTTCTCAACTTATGCTCACTGGTGGATTAAGC
AGGCTGTTAGGAAATCTCTCTCTGATCAGTCCAGGACGATTAGGTTGCCATTTCACATGG
TCGAGGCTACTTATAGAGTTAAGGAAGCAAGAAAGCAATTGTTGACTGAAAATGGTAGAC
ATCCTAACGATGCAGAGGTAGCAGAAGCAACAGGGTTGTCAATGAAGAGACTCGCTGCTG
TGATGTTAACTCCTAAAGCTCCAAGATCACTTGACCAGAAAGTTGGGTTCAATGAAAGTC
TCAAACCTTCGGAAGTGCTTGCAGACCCTGACGCGGAAACATCAGAAGAAATACTGACCA
AGCAGTTCATGAGACAGGACCTGGAGAAGGTATTAGACACCTTAAATCCAAGGGAGAAGC
AGGTCGTTAGATGGCGATTTGGACTAGAGGATGGCAGGATGAAGACGTTACAAGAAATTG
GTGAGTTAATGGGCGTTAGCCGGGAGAGAATTCGCCAAATAGAGTCTTGTGCATTCCGTA
AGTTGAAGAACAAGAAAAGAACAAAGTTTTTGCAGCAATATATAAATGCTTAAAGTCTCT
ACTATATATACATCAAGAAAGTAGATTTGACCTTCCAGTCGTTGAGTCTTTGTTGTTAGA
AAAAATTGAGGCTTAGATAAGCTTTGGTTCTTTAACTGTTCTTATTCTTCAGAACTCTGC
AAATATGTTGTGCATAATACAAAATTTTGGCTCAAATAATCAGATATTGTAATTTATTGT
TGTAGGTTTAATTTTGGAAAGATTAAAAAATTGTAAACGAACATTTCTACCTTTCTTGAA
TAGTAGCCTTAGAGCAATGATAAAGTTGAAGTTGTCTGTCTTATAGCCGCTTGAGGTGTG
GCTTTTCTTTGGACCTTACGTGAATTCTATGTT