Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g081140.1.1
CDS Infomation

Phototropic-responsive NPH3 family protein, putative (AHRD V3.3 *** A0A061EZT3_THECC)
Sequence

ATGGGCAAAAGCAAAAGCATAGGATCTTCGTCCAGGAAACTAATGCATGCTTCATCATCA
GATGTTCAGCTCAACATCTGTGGATTGCCATTCTCTTTGAATAGGGAACTTTTGGCTGCA
AGATCTTCAAAGCTAGATGCATTACTGAGAGAGAATCCTGAAGATGATCTTTCTCATTTG
CTAGGAGATATTCCCGCGGATTCTGAAACGTTTGAGATTGTAGCAAGATTCTGTCATGGC
TTTGACATAAACTTGTCATCTGAGAATGTTATTAAAGTACTTTGTCTTGCTCACTATCTT
GGAATGTCCGAAATTCACAGCACCAATAACCTCACAAAGAAGGCTTGTTTCTACTTTCAA
AACGATGTGCTTCCTAGCTGGAACAAGAGTATTAAAGCCCTCAGATCTGCAGAAAACATT
CTTCAACAAGCCGCGGATCTTGCCTTGATTGATGCATGTGCTGAGTCCATCATCGCCAAG
GTAATGCACGATCCAAGTCTTCTTGGAGAGCCAATGAGGAATGTAACAACAACGGATGAT
GATAGTGAGAACGATGAAAATGCCTACAAGCCAAATGTTAGGAGGAGGCTTTTTGTTCTT
GACTGGAAATCAGAGGACTTGACACTACTTCCCATTCCTCTCTACGAGCCCATAATTCGT
GCAATGGTTCAACGCAAAGTCCCTCTGGAATATGTGGCATCATCTCTGTTTGAGTATCTC
AACAAATGGGTTTTTTCGGACACTAAAGGAGGAGAAGATGATCCGTTAACTTGTGAGAAG
AATTCTCAAAGAGTGATCATTGAGGCAGTGGAGAGACTGTTGCCTCAAGAAAGGGGGCTA
ATCCCCATTTCTTTGCTCTCTCAAATGCTGCAATCTGCGATAATCTTGGATGCTCATACT
GAATGCAAAACCGGGTTGGAGATTAGAATAGGAAAGCAACTAGACCAGGCAACCGTGAAG
GACCTCTTAATACCTGCACAAGGATATGCAAAAGAAGAGCGTTATGACACTGAAAGTGTG
AAAAGGATATTAAAGAATTTCTACAGCAATTACGCAAGCACAGATAAATCTGGCCTAGTC
GTCGTAGCTGAACTTGTAGATAACTTCTTGGCTGAGGTTTCTAGTGATATAGATTTAAAG
TTGAACACATTCTTATCACTAGCAGAGTTATCACAAGCAGCAACAGGAGGAACTAACAGA
AATTCTGATGGTATGTATAGGGCAATTGATATATACTTGGACAAGCACAGATATCTCACA
GATTGGGAAAGGGAGGAGGTTTGCAGGGTGTTAGATTCCAGCAAAATGTCTCCTGAAGCC
TGTGAGCATGCTGCACAGAACGAAAAACTACCAATTCGAGTGATGGTTCAGATTCTGTTT
TCTGTGCAGCTGAAGTTGAAGGATACCGTGTCCAAGAAGATACAAGGGAGTCCTGATAAC
CGATTGTTGAAGCTGGAAGAAGATGAGAGAGGGACTAGCAGCAATGAAGAGGAAATTATG
AAAGCAGAGATAGAAAAGATGGGAAGCAAGGTGGTTAAGCTGGAGAAAGAATGCGATACG
ATGAGAAGGGAAATTCAAAGAGGTGGTTCCCAGCACAAGAACCAAAAGGGGAAAACAAGC
ATATGGAAAGAAATGAAGAGGAAACTTGGTTGTATGACAAGCTTGCATGAACCAAATTGT
CATGTGAAGAAGAAAAAAGTCCATCCTCCAAAATAG

Peptide Sequence

PEP ID

Solyc01g081140.1.1
PEP Infomation

Phototropic-responsive NPH3 family protein, putative (AHRD V3.3 *** A0A061EZT3_THECC)
Sequence

MGKSKSIGSSSRKLMHASSSDVQLNICGLPFSLNRELLAARSSKLDALLRENPEDDLSHL
LGDIPADSETFEIVARFCHGFDINLSSENVIKVLCLAHYLGMSEIHSTNNLTKKACFYFQ
NDVLPSWNKSIKALRSAENILQQAADLALIDACAESIIAKVMHDPSLLGEPMRNVTTTDD
DSENDENAYKPNVRRRLFVLDWKSEDLTLLPIPLYEPIIRAMVQRKVPLEYVASSLFEYL
NKWVFSDTKGGEDDPLTCEKNSQRVIIEAVERLLPQERGLIPISLLSQMLQSAIILDAHT
ECKTGLEIRIGKQLDQATVKDLLIPAQGYAKEERYDTESVKRILKNFYSNYASTDKSGLV
VVAELVDNFLAEVSSDIDLKLNTFLSLAELSQAATGGTNRNSDGMYRAIDIYLDKHRYLT
DWEREEVCRVLDSSKMSPEACEHAAQNEKLPIRVMVQILFSVQLKLKDTVSKKIQGSPDN
RLLKLEEDERGTSSNEEEIMKAEIEKMGSKVVKLEKECDTMRREIQRGGSQHKNQKGKTS
IWKEMKRKLGCMTSLHEPNCHVKKKKVHPPK*

Transcript Sequence

Transcript ID

Solyc01g081140.1.1
Transcript Infomation

Phototropic-responsive NPH3 family protein, putative (AHRD V3.3 *** A0A061EZT3_THECC)
Sequence

ATGGGCAAAAGCAAAAGCATAGGATCTTCGTCCAGGAAACTAATGCATGCTTCATCATCA
GATGTTCAGCTCAACATCTGTGGATTGCCATTCTCTTTGAATAGGGAACTTTTGGCTGCA
AGATCTTCAAAGCTAGATGCATTACTGAGAGAGAATCCTGAAGATGATCTTTCTCATTTG
CTAGGAGATATTCCCGCGGATTCTGAAACGTTTGAGATTGTAGCAAGATTCTGTCATGGC
TTTGACATAAACTTGTCATCTGAGAATGTTATTAAAGTACTTTGTCTTGCTCACTATCTT
GGAATGTCCGAAATTCACAGCACCAATAACCTCACAAAGAAGGCTTGTTTCTACTTTCAA
AACGATGTGCTTCCTAGCTGGAACAAGAGTATTAAAGCCCTCAGATCTGCAGAAAACATT
CTTCAACAAGCCGCGGATCTTGCCTTGATTGATGCATGTGCTGAGTCCATCATCGCCAAG
GTAATGCACGATCCAAGTCTTCTTGGAGAGCCAATGAGGAATGTAACAACAACGGATGAT
GATAGTGAGAACGATGAAAATGCCTACAAGCCAAATGTTAGGAGGAGGCTTTTTGTTCTT
GACTGGAAATCAGAGGACTTGACACTACTTCCCATTCCTCTCTACGAGCCCATAATTCGT
GCAATGGTTCAACGCAAAGTCCCTCTGGAATATGTGGCATCATCTCTGTTTGAGTATCTC
AACAAATGGGTTTTTTCGGACACTAAAGGAGGAGAAGATGATCCGTTAACTTGTGAGAAG
AATTCTCAAAGAGTGATCATTGAGGCAGTGGAGAGACTGTTGCCTCAAGAAAGGGGGCTA
ATCCCCATTTCTTTGCTCTCTCAAATGCTGCAATCTGCGATAATCTTGGATGCTCATACT
GAATGCAAAACCGGGTTGGAGATTAGAATAGGAAAGCAACTAGACCAGGCAACCGTGAAG
GACCTCTTAATACCTGCACAAGGATATGCAAAAGAAGAGCGTTATGACACTGAAAGTGTG
AAAAGGATATTAAAGAATTTCTACAGCAATTACGCAAGCACAGATAAATCTGGCCTAGTC
GTCGTAGCTGAACTTGTAGATAACTTCTTGGCTGAGGTTTCTAGTGATATAGATTTAAAG
TTGAACACATTCTTATCACTAGCAGAGTTATCACAAGCAGCAACAGGAGGAACTAACAGA
AATTCTGATGGTATGTATAGGGCAATTGATATATACTTGGACAAGCACAGATATCTCACA
GATTGGGAAAGGGAGGAGGTTTGCAGGGTGTTAGATTCCAGCAAAATGTCTCCTGAAGCC
TGTGAGCATGCTGCACAGAACGAAAAACTACCAATTCGAGTGATGGTTCAGATTCTGTTT
TCTGTGCAGCTGAAGTTGAAGGATACCGTGTCCAAGAAGATACAAGGGAGTCCTGATAAC
CGATTGTTGAAGCTGGAAGAAGATGAGAGAGGGACTAGCAGCAATGAAGAGGAAATTATG
AAAGCAGAGATAGAAAAGATGGGAAGCAAGGTGGTTAAGCTGGAGAAAGAATGCGATACG
ATGAGAAGGGAAATTCAAAGAGGTGGTTCCCAGCACAAGAACCAAAAGGGGAAAACAAGC
ATATGGAAAGAAATGAAGAGGAAACTTGGTTGTATGACAAGCTTGCATGAACCAAATTGT
CATGTGAAGAAGAAAAAAGTCCATCCTCCAAAATAG