Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g079350.3.1
CDS Infomation

HIT zinc finger,PAPA-1-like conserved region, putative (AHRD V3.3 *** A0A061F305_THECC)
Sequence

ATGGATGAGTCTGGTGGAACTCGATTTGAAGGGCTCAATGCTACTGTTAGAAAGAAAAGA
AGCCTAATGTTGCGGCGACCTAGACCAGAGAAGCCTTTTTTTCATGAAGGCCGTGATCAG
TCTCCCTTAACACCAGTTTCAGATGATTTTGGTAGGGTTTCTAGTGATGAGAACATTGAT
GATGCCAATGCTGGACGTAAAATGTTCAACCTTAATCATTGCATGTCTAGAGGCTCTGTT
TCCAGAGTGGATGAGGACTACACTTTTAAGAAGAATAAGGATGGAGGATCTAGTCTGTTA
TATAGTAATGGAGATCCAGGAGATGATACATATTCCCAGTATGGCTCCTCTCTTAGGCAA
ACAGGAACTGTGCAGGATGGTGTTGGCAATGATAACAAGCTGAAGAAGGTTAAGCTTAAA
GTTGGGGGTGTGACGCGCACCATTCAAACCAAAACTGATTCTCATGGTGCATATGGTGGT
GGTTTGTCTACAAATGCACGAGCCTTGGATGGTTCGCAGCCACGTCAGAAATCTACTTCA
CAGGACACATCAAGCAAAGACGGTCTTTCGGAAAAGAAAAGTGGGTTGCAAGGAATTATG
TCAAGAGATTCGCCCAAGGGTTCTTTTGCTGCTGGCAAAGGAGGCGATATGGGGAAGATG
CCAATGACGAATGCCTTTGAAAAAGGAGGTGACAAATCAGATCCGACCCGTAAGAGTAAG
AGGGTTCCAAAGAGGCGTGTATCGGAATGGTTTGATGAGGATGGGGAAGATGATGAGATT
CGATACTTGGAAAAGCTTAAAACCTCGAAGATTTCAGGATATAAAGATTTTGAGGAGGAA
TCGACCAACAAAAGAAGTGTTTCCCGGGTTTCAAAGGTTAGCAAGTTTGAAAAGGATGAA
AATGTGGGAAGGTCAAGGAAGAAATCTGAGCAAGGTTCTGAGGACACTGCTTATGAGGTG
GAAGAGTTCGTGTCTGATGGTGAGGCTGAAGGAAAAAAGAAGCAGAAACAAAGGAAGGAA
TCCTCAGATTCATCGATCGATGCGATGAGAGGAGAAATGACTCTTACAACACGACAACGA
GCTCTCCTATCTAGCAAGGATTCTTCTGCTGCTGCTTCTGCGAGTCAGATTGAGTTCCCT
AATGGTTTACCACCGGCTCCACCTCGAAAGCAAAAGGAGAAGCTCACTGATGTTGAGCAG
CAACTGAAGAAAGCAGAGGCTGCTCAGAAACGTAGAATGCAAAATGAGAAGGCTGCTCGT
GAATCAGAGGCTGAGGCAATTAGGAAAATCCTAGGTCAAGATTCTAACAGGAAGAAGCGA
GAAGATAAAATAAAGAAGCGGCAGGAAGAGTTGGCTCAGGAGAAGGCTGCCAAAGAGCAG
ATGCTTGCAAAAAGCACTATCAGAGTGGTTATGGGCCCTACCGGCACTGTTGTGACATTT
CCTGAAGATATGGGTTTACCTCATATTTTTGACTCTAAACCTTGCAGTTATCCTCCCCCT
CGTGAGCAATGTGCTGGTCCTTCCTGCGTGAATCCGTACAAGTATCGTGATTCTAAGACA
AAACTTCCTCTTTGCAGTCTCCAGTGCTATAAGGCAATTCGTGAGAAGGAGCAGGCTTGA

Peptide Sequence

PEP ID

Solyc01g079350.3.1
PEP Infomation

HIT zinc finger,PAPA-1-like conserved region, putative (AHRD V3.3 *** A0A061F305_THECC)
Sequence

MDESGGTRFEGLNATVRKKRSLMLRRPRPEKPFFHEGRDQSPLTPVSDDFGRVSSDENID
DANAGRKMFNLNHCMSRGSVSRVDEDYTFKKNKDGGSSLLYSNGDPGDDTYSQYGSSLRQ
TGTVQDGVGNDNKLKKVKLKVGGVTRTIQTKTDSHGAYGGGLSTNARALDGSQPRQKSTS
QDTSSKDGLSEKKSGLQGIMSRDSPKGSFAAGKGGDMGKMPMTNAFEKGGDKSDPTRKSK
RVPKRRVSEWFDEDGEDDEIRYLEKLKTSKISGYKDFEEESTNKRSVSRVSKVSKFEKDE
NVGRSRKKSEQGSEDTAYEVEEFVSDGEAEGKKKQKQRKESSDSSIDAMRGEMTLTTRQR
ALLSSKDSSAAASASQIEFPNGLPPAPPRKQKEKLTDVEQQLKKAEAAQKRRMQNEKAAR
ESEAEAIRKILGQDSNRKKREDKIKKRQEELAQEKAAKEQMLAKSTIRVVMGPTGTVVTF
PEDMGLPHIFDSKPCSYPPPREQCAGPSCVNPYKYRDSKTKLPLCSLQCYKAIREKEQA*

Transcript Sequence

Transcript ID

Solyc01g079350.3.1
Transcript Infomation

HIT zinc finger,PAPA-1-like conserved region, putative (AHRD V3.3 *** A0A061F305_THECC)
Sequence

GCTGTTCGCCGTTGCTGCTGCTCGGTTCTCTGCCATTCTCAAGTTTCCTGTTTGGTGCAA
CAATGAACAAACTCATTTAGCAAGTTGTCTTTTTGCCGCGATTAATACACGTGTTCCTGG
TGGCCCTAGTTGTTTTACATGTCATGGATGAGTCTGGTGGAACTCGATTTGAAGGGCTCA
ATGCTACTGTTAGAAAGAAAAGAAGCCTAATGTTGCGGCGACCTAGACCAGAGAAGCCTT
TTTTTCATGAAGGCCGTGATCAGTCTCCCTTAACACCAGTTTCAGATGATTTTGGTAGGG
TTTCTAGTGATGAGAACATTGATGATGCCAATGCTGGACGTAAAATGTTCAACCTTAATC
ATTGCATGTCTAGAGGCTCTGTTTCCAGAGTGGATGAGGACTACACTTTTAAGAAGAATA
AGGATGGAGGATCTAGTCTGTTATATAGTAATGGAGATCCAGGAGATGATACATATTCCC
AGTATGGCTCCTCTCTTAGGCAAACAGGAACTGTGCAGGATGGTGTTGGCAATGATAACA
AGCTGAAGAAGGTTAAGCTTAAAGTTGGGGGTGTGACGCGCACCATTCAAACCAAAACTG
ATTCTCATGGTGCATATGGTGGTGGTTTGTCTACAAATGCACGAGCCTTGGATGGTTCGC
AGCCACGTCAGAAATCTACTTCACAGGACACATCAAGCAAAGACGGTCTTTCGGAAAAGA
AAAGTGGGTTGCAAGGAATTATGTCAAGAGATTCGCCCAAGGGTTCTTTTGCTGCTGGCA
AAGGAGGCGATATGGGGAAGATGCCAATGACGAATGCCTTTGAAAAAGGAGGTGACAAAT
CAGATCCGACCCGTAAGAGTAAGAGGGTTCCAAAGAGGCGTGTATCGGAATGGTTTGATG
AGGATGGGGAAGATGATGAGATTCGATACTTGGAAAAGCTTAAAACCTCGAAGATTTCAG
GATATAAAGATTTTGAGGAGGAATCGACCAACAAAAGAAGTGTTTCCCGGGTTTCAAAGG
TTAGCAAGTTTGAAAAGGATGAAAATGTGGGAAGGTCAAGGAAGAAATCTGAGCAAGGTT
CTGAGGACACTGCTTATGAGGTGGAAGAGTTCGTGTCTGATGGTGAGGCTGAAGGAAAAA
AGAAGCAGAAACAAAGGAAGGAATCCTCAGATTCATCGATCGATGCGATGAGAGGAGAAA
TGACTCTTACAACACGACAACGAGCTCTCCTATCTAGCAAGGATTCTTCTGCTGCTGCTT
CTGCGAGTCAGATTGAGTTCCCTAATGGTTTACCACCGGCTCCACCTCGAAAGCAAAAGG
AGAAGCTCACTGATGTTGAGCAGCAACTGAAGAAAGCAGAGGCTGCTCAGAAACGTAGAA
TGCAAAATGAGAAGGCTGCTCGTGAATCAGAGGCTGAGGCAATTAGGAAAATCCTAGGTC
AAGATTCTAACAGGAAGAAGCGAGAAGATAAAATAAAGAAGCGGCAGGAAGAGTTGGCTC
AGGAGAAGGCTGCCAAAGAGCAGATGCTTGCAAAAAGCACTATCAGAGTGGTTATGGGCC
CTACCGGCACTGTTGTGACATTTCCTGAAGATATGGGTTTACCTCATATTTTTGACTCTA
AACCTTGCAGTTATCCTCCCCCTCGTGAGCAATGTGCTGGTCCTTCCTGCGTGAATCCGT
ACAAGTATCGTGATTCTAAGACAAAACTTCCTCTTTGCAGTCTCCAGTGCTATAAGGCAA
TTCGTGAGAAGGAGCAGGCTTGAAAGCCTGCTAAAAATTGTTTTGACATATGCTCTTGCA
CATTGTTTAGATTTAATCAAGTATAACGAGGATATCTTTTCCATATGCAGTACTCATGAA
CAGAGCGAACAAATTGTATACAGGAATGTTTTGGTGTCTCATAAATGTATGCTGCGTGCC
CCTAGTTAATTTTTCATCCCTCATTGTTTATTAGTTTTTCCCTATTTGCTGTCCAGTTGA
GCATGTTTTGGTGATTGTTTTCCTCTCTCTTGGAGTGCATTCTTTGGGGAGTGTCAATTT
TTTGTGTGTTTTTCTGCTGGAAGTTTTGTCATTGGAGGGTTTTATTACTTCAGCTGAGTC
TCATCTGTTGAACTTGAACATCTGATGAAGCTTTTCTAATCCTCAAGTGTGAATTACTAA
ATGTCTTCTAGTAATACGTTATACCTTAATAATTCTGCTGTGTGAGCCTGCTCAACT