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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g079180.3.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4AXG4_SOLLC)
Sequence

ATGGCATTAGCTTCCACACTTACTCTATTATTGTTCTTCCTTTCCATGCTGCTCATGCCA
TTGACTTCACAAGAAAAAGACAATGAGAATTTTGATGAATGGATATCTTTGAATGTGAAA
CACTACAATAGTAGAAACAGAGAAACGAGTTTGAAATGGACGCAAGAATCAATCAAACAC
AAAAAACAACATCATGTTCCTCCACCTCCCGTTAGTAGCAGCTTTGATCCAAAACTTATA
TACGCGGAGATGAACAAAATGATAATCACCGTGAGTCAAGACGGAAGTAGCAATTTCAAT
ACTATTAAGGAAGCTCTTGCTACCATTCCACTCTATAACAAGCGCAGGGTCATACTGGAC
ATCAAACCCGGAGTTTATAGGGAAAAAATTAACATTCCAAGAAGTTCGCCGTTTGTGACA
TTTCGGGGCGATAGTAGCAATCCGCCACGGATTACAGGAAATGACACAGCTTCAGCTACA
CGAACCGGTGGTACGCCTTTAAAGACATTCCAAAGTGCTACCGTTTCTGTCGATGCCGAT
TATTTTATCGCCATAAATGTTATTTTTGAGAATACAGCACCCCATGTGGTTGGAACCGCA
GGAGAACAAGCAGTGGCACTAAGAATATCAGGAAACAAAGCAGCATTTTACAATTGCAGT
TTCTATGGAAGCCAAGACACACTTTATGATCATAAGGGACTTCACTATTTCAACAATTGT
TTCATTCAAGGCTCTGTTGATTTCATTTTTGGGTATGGTAGATCCCTATATGAGAACTGC
CAGTTGAACTCCGTAGCAAAGAAAGTGGCGTCCCTGACAGCGCAGAAACGTACAAATTCA
TCGATATTAAGTGGATTTTCGTTCAAGAACAGCACCATAACAGGGACAGGATCAGTTTAT
TTAGGCAGGGCGTGGGGTGATTATTCTAGAGTGATATTTTCGTATACTTACATGGACAAC
ATTGTTCTTCCACTAGGATGGAATGATTGGGGCAAAACAACTAGAGACTCGAGAGTGTAT
TATGGGGAGTACAGGTGCAGTGGACCAGGAGCCAACATTACAGGAAGAGTTCCGTGGGCG
CGAATTCTCAACGATGAAGAGGCCATGCCTTTTATTGGCACCTATTATGTTGATGGCGAT
TCTTGGCTTATACATCCCTACTAG

Peptide Sequence

PEP ID

Solyc01g079180.3.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4AXG4_SOLLC)
Sequence

MALASTLTLLLFFLSMLLMPLTSQEKDNENFDEWISLNVKHYNSRNRETSLKWTQESIKH
KKQHHVPPPPVSSSFDPKLIYAEMNKMIITVSQDGSSNFNTIKEALATIPLYNKRRVILD
IKPGVYREKINIPRSSPFVTFRGDSSNPPRITGNDTASATRTGGTPLKTFQSATVSVDAD
YFIAINVIFENTAPHVVGTAGEQAVALRISGNKAAFYNCSFYGSQDTLYDHKGLHYFNNC
FIQGSVDFIFGYGRSLYENCQLNSVAKKVASLTAQKRTNSSILSGFSFKNSTITGTGSVY
LGRAWGDYSRVIFSYTYMDNIVLPLGWNDWGKTTRDSRVYYGEYRCSGPGANITGRVPWA
RILNDEEAMPFIGTYYVDGDSWLIHPY*

Transcript Sequence

Transcript ID

Solyc01g079180.3.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4AXG4_SOLLC)
Sequence

TATGGCCAGTTTAGTAAATGTAGGTCAAGATAAGACCAAACCCAACGTAACCACAATACC
TTTTTCTTTTGTATATATATATATATGCATGTGAATTGTGATGATCATGCAAACACAAAG
ATAGTGCTTAATATTGGATAATTATAGTTATTTATTCTTCCACCCTACCCATTCTAACTC
AATGGCATTAGCTTCCACACTTACTCTATTATTGTTCTTCCTTTCCATGCTGCTCATGCC
ATTGACTTCACAAGAAAAAGACAATGAGAATTTTGATGAATGGATATCTTTGAATGTGAA
ACACTACAATAGTAGAAACAGAGAAACGAGTTTGAAATGGACGCAAGAATCAATCAAACA
CAAAAAACAACATCATGTTCCTCCACCTCCCGTTAGTAGCAGCTTTGATCCAAAACTTAT
ATACGCGGAGATGAACAAAATGATAATCACCGTGAGTCAAGACGGAAGTAGCAATTTCAA
TACTATTAAGGAAGCTCTTGCTACCATTCCACTCTATAACAAGCGCAGGGTCATACTGGA
CATCAAACCCGGAGTTTATAGGGAAAAAATTAACATTCCAAGAAGTTCGCCGTTTGTGAC
ATTTCGGGGCGATAGTAGCAATCCGCCACGGATTACAGGAAATGACACAGCTTCAGCTAC
ACGAACCGGTGGTACGCCTTTAAAGACATTCCAAAGTGCTACCGTTTCTGTCGATGCCGA
TTATTTTATCGCCATAAATGTTATTTTTGAGAATACAGCACCCCATGTGGTTGGAACCGC
AGGAGAACAAGCAGTGGCACTAAGAATATCAGGAAACAAAGCAGCATTTTACAATTGCAG
TTTCTATGGAAGCCAAGACACACTTTATGATCATAAGGGACTTCACTATTTCAACAATTG
TTTCATTCAAGGCTCTGTTGATTTCATTTTTGGGTATGGTAGATCCCTATATGAGAACTG
CCAGTTGAACTCCGTAGCAAAGAAAGTGGCGTCCCTGACAGCGCAGAAACGTACAAATTC
ATCGATATTAAGTGGATTTTCGTTCAAGAACAGCACCATAACAGGGACAGGATCAGTTTA
TTTAGGCAGGGCGTGGGGTGATTATTCTAGAGTGATATTTTCGTATACTTACATGGACAA
CATTGTTCTTCCACTAGGATGGAATGATTGGGGCAAAACAACTAGAGACTCGAGAGTGTA
TTATGGGGAGTACAGGTGCAGTGGACCAGGAGCCAACATTACAGGAAGAGTTCCGTGGGC
GCGAATTCTCAACGATGAAGAGGCCATGCCTTTTATTGGCACCTATTATGTTGATGGCGA
TTCTTGGCTTATACATCCCTACTAGTTACAACTTGCAATAATCAATTTTATTGCTTATGT
ACACCCTTTCGCGTCATTCTACTTGTTATGGTTGTGACAAATAACAAATTTATTACAAGC
ATACGTATCGCGTTACATTGTAAAAGATAC