Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g068490.3.1
CDS Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9NJR6_ZOSMR)
Sequence

ATGAGTGTGAAAACAAAAACATTAATCATACAAGTGTGTACTGAGCAACAATCAATTACA
ACCACAGATGACAGTATGGATTCTCCTCAAGAACATCTCTCCGAGTTCATGGAGAAGCTA
AGCTCAATTCTTACTGATTTGAAAGATGATAAAAGGGTAGTTATGATCAGTAATCCTCAT
ATTCAGAAAGCAATTGAATCACTTGAAGTCGATTTTCGACGTGCCGAGTCTGTGGTGAAA
AGCAGCAGAATTTCATCTACACATGATGAGAACATTGAACAAGTGACTCAGACTCTTGCA
AGGGGTTTAGGCCTTGTGCTCTTTGCTAGTCATGATGTTGTTGAAAGTAGTAAGAAGGCA
GAGATTGAGGTGCTGAGAAGAGATATGATGAAGATGAGTGGTGTTAATAAGACTAATTTG
ATTATGAGTTCAGATGAATCCGAGTTCTCATCGTATGATCGAGGGGTAGTGGAAGAAGAC
GATAGAACAACTATAGATGTCGATGGGATAGTGGAAGAAGACGATAGGATAGCTTTAGAT
GTCGATGAGATAGTGGAAGAAGACGATAAAATAACTCTAGATGTTGATGATGTTGTTGTT
CAAATCAAGTATGGAGATGATGAACTTCTTAAATGTGCACTTAATGGATTAAAGTCATTG
GTTTTAGATGGTATGATTACTAAAGAAGGGGTTCATCATGAAGATATGATCCCCGTTCTG
TTTAGTCGATTGAGTTCAAGTAAAACAGACCACAGATTGATTATACTCCGAATACTACAA
GCCCTGGCCGCTCAAGATGATGAATATAAGGAAATGATGGCAGAAATGGGGAATTTATCG
ATACTGGTGAAGTCGTTGGGTCATGATTTGGAAGAGCAAAAAGAAGCAGTGGGGCTGTTA
GTGAGTCTATCAGATGTTGCTGCAGTTAGGAGAAGAGTTGGGAGAATTCAAGGGTGCATC
CTCATGTTGGTTGCAATTCTTAATGGGGATGATCAAATGTCGTCACATGACGCTGCCAAC
TTGTTAAATGCTTTATCAGGCAATACTCAATATGCTCTTCATATGGCTGAGGCTGGCTAT
TTCAAGCCTCTTGTACACTATTTGAACCAAGGATCAGATATGAGTAAGATTCTAATGGCA
ACAGCACTTTCAAGAATGGAACTCACAGATCAAAATAGAGCTAACCTGGGACAAGATGGA
GCCGTTGAACCGCTAGTCAAAATGTTCACCTCTGGGAACCTAGAAGCTAAGCAATCGTCT
CTAAACGCGTTGCACAACTTGTGTGCCTCAAAAGCAAACGTTCAACGTCTGATAAAATCG
GGCATAATTGCTACTCTGCTACAGCTTCTTTTCTCTGTTACATCGGTGCTCATGACTCTA
AGAGAGCCAGCATCTGCAATTCTTGCAAAAATAGCTGCTCAATCGGAAGTTGGCATAGTA
CTAGTGAAACAAGATGTTGCACAGCAGATGATTTCGCTCCTTCATCTGACGAGTCCAGTA
ATTCAGTGTCACTTGTTAGAAGCACTTAATGCCATCGCTGCTTGTCCGAATGCTTCAAAG
GTCAGAAGAAAAATGAAGGAAAATGGCGCTGTTCGCCTCCTCTTACCATTCCTAACAGAA
AGCCGCAATACAAAGATTAGAAATGGAGCTTTAAATTTGATTTACGTATTGTCTAATGAT
ATGCAAGGTGGGGAGCTAATGGAGCAGCTAGAACAAATACATCTGAATACATTGATCAAC
ATCATATCATCATCATCCACGACGGATGATGAAAAGGCTGCTGCTGTTGGCATACTAAGC
AACTTTCCAGTGAGTGACAAGAATGTCACAGACATGTTTATGAAAGCAAACCTACTGCCC
ATTTTGGTTTCCATATTGACATCAACTACTCCAACAACAACACCACATTTACTAGCTGAG
AATGTCTCCGCAGTACTAATCCGATTCACCCTTCCATCAGACAAGAAACTACAACACTTG
TCTGTCGAAAACGGGGTGATCAATGTTTTAGTAAAGCTCCTCACATGTGGCTCCATAGTA
GCCAAAAGTAGAGCTGCAACATCACTAGCTCAACTATCTCAAAACTCACTGACTCTACGA
AAATCAAGAAAATCAAGATGGTTTTCATGTGCCCCTCCACATCCTACAGACACATTTTGT
CAAGTACATGATGGGGATTGCTCTATAAAAACCACATTCTGCTTGGTAAAAGCGGGGGCA
ATGCCCCCGCTAGTCCAACTATTGCAAGGCAACGAAAGAGCAGCTGACGAAGCTGCTCTC
CGTTGCCTTGCAACATTACAACAAGATGAGATTTGGGAAAATGGGAGCAACTTGTTAGTG
AAAATGTCATGTGTACAACCAATTATGAAGATTCTTGAAGAAGGGATTAGCTTAAAAGCT
CAAGAGAAATGTCTTTGGATATTGGAAAGGATATTTAGAGTGGAAGCTTATAGAGTAGAG
TATGGTGAATATGCACAAGTTGTGCTAATTGATTTAGCACAAAATGGGAATTCATTGTTG
AAACCTACGGTGGCTAAATTATTAGCACAACTTGAGCTCTTGCAGCAACAATCTAGTTAC
TTTTGA

Peptide Sequence

PEP ID

Solyc01g068490.3.1
PEP Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9NJR6_ZOSMR)
Sequence

MSVKTKTLIIQVCTEQQSITTTDDSMDSPQEHLSEFMEKLSSILTDLKDDKRVVMISNPH
IQKAIESLEVDFRRAESVVKSSRISSTHDENIEQVTQTLARGLGLVLFASHDVVESSKKA
EIEVLRRDMMKMSGVNKTNLIMSSDESEFSSYDRGVVEEDDRTTIDVDGIVEEDDRIALD
VDEIVEEDDKITLDVDDVVVQIKYGDDELLKCALNGLKSLVLDGMITKEGVHHEDMIPVL
FSRLSSSKTDHRLIILRILQALAAQDDEYKEMMAEMGNLSILVKSLGHDLEEQKEAVGLL
VSLSDVAAVRRRVGRIQGCILMLVAILNGDDQMSSHDAANLLNALSGNTQYALHMAEAGY
FKPLVHYLNQGSDMSKILMATALSRMELTDQNRANLGQDGAVEPLVKMFTSGNLEAKQSS
LNALHNLCASKANVQRLIKSGIIATLLQLLFSVTSVLMTLREPASAILAKIAAQSEVGIV
LVKQDVAQQMISLLHLTSPVIQCHLLEALNAIAACPNASKVRRKMKENGAVRLLLPFLTE
SRNTKIRNGALNLIYVLSNDMQGGELMEQLEQIHLNTLINIISSSSTTDDEKAAAVGILS
NFPVSDKNVTDMFMKANLLPILVSILTSTTPTTTPHLLAENVSAVLIRFTLPSDKKLQHL
SVENGVINVLVKLLTCGSIVAKSRAATSLAQLSQNSLTLRKSRKSRWFSCAPPHPTDTFC
QVHDGDCSIKTTFCLVKAGAMPPLVQLLQGNERAADEAALRCLATLQQDEIWENGSNLLV
KMSCVQPIMKILEEGISLKAQEKCLWILERIFRVEAYRVEYGEYAQVVLIDLAQNGNSLL
KPTVAKLLAQLELLQQQSSYF*

Transcript Sequence

Transcript ID

Solyc01g068490.3.1
Transcript Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9NJR6_ZOSMR)
Sequence

AAAAAACAAAACAACACTTTCAAAATTCAATATATTAAGCAAAATTAGCCCTTGTAATAC
ACGTCAAATGAACTAAAAAGATGAACAAAACAAACAAACTAATACTGTTAAAGACTTGAA
ACCAAGTCTTTGGTCTTTATTTTCATTTTCTTCTTTCATACTTCAAAAACAAAACAAAAG
AACTTGAGATGAGTGTGAAAACAAAAACATTAATCATACAAGTGTGTACTGAGCAACAAT
CAATTACAACCACAGATGACAGTATGGATTCTCCTCAAGAACATCTCTCCGAGTTCATGG
AGAAGCTAAGCTCAATTCTTACTGATTTGAAAGATGATAAAAGGGTAGTTATGATCAGTA
ATCCTCATATTCAGAAAGCAATTGAATCACTTGAAGTCGATTTTCGACGTGCCGAGTCTG
TGGTGAAAAGCAGCAGAATTTCATCTACACATGATGAGAACATTGAACAAGTGACTCAGA
CTCTTGCAAGGGGTTTAGGCCTTGTGCTCTTTGCTAGTCATGATGTTGTTGAAAGTAGTA
AGAAGGCAGAGATTGAGGTGCTGAGAAGAGATATGATGAAGATGAGTGGTGTTAATAAGA
CTAATTTGATTATGAGTTCAGATGAATCCGAGTTCTCATCGTATGATCGAGGGGTAGTGG
AAGAAGACGATAGAACAACTATAGATGTCGATGGGATAGTGGAAGAAGACGATAGGATAG
CTTTAGATGTCGATGAGATAGTGGAAGAAGACGATAAAATAACTCTAGATGTTGATGATG
TTGTTGTTCAAATCAAGTATGGAGATGATGAACTTCTTAAATGTGCACTTAATGGATTAA
AGTCATTGGTTTTAGATGGTATGATTACTAAAGAAGGGGTTCATCATGAAGATATGATCC
CCGTTCTGTTTAGTCGATTGAGTTCAAGTAAAACAGACCACAGATTGATTATACTCCGAA
TACTACAAGCCCTGGCCGCTCAAGATGATGAATATAAGGAAATGATGGCAGAAATGGGGA
ATTTATCGATACTGGTGAAGTCGTTGGGTCATGATTTGGAAGAGCAAAAAGAAGCAGTGG
GGCTGTTAGTGAGTCTATCAGATGTTGCTGCAGTTAGGAGAAGAGTTGGGAGAATTCAAG
GGTGCATCCTCATGTTGGTTGCAATTCTTAATGGGGATGATCAAATGTCGTCACATGACG
CTGCCAACTTGTTAAATGCTTTATCAGGCAATACTCAATATGCTCTTCATATGGCTGAGG
CTGGCTATTTCAAGCCTCTTGTACACTATTTGAACCAAGGATCAGATATGAGTAAGATTC
TAATGGCAACAGCACTTTCAAGAATGGAACTCACAGATCAAAATAGAGCTAACCTGGGAC
AAGATGGAGCCGTTGAACCGCTAGTCAAAATGTTCACCTCTGGGAACCTAGAAGCTAAGC
AATCGTCTCTAAACGCGTTGCACAACTTGTGTGCCTCAAAAGCAAACGTTCAACGTCTGA
TAAAATCGGGCATAATTGCTACTCTGCTACAGCTTCTTTTCTCTGTTACATCGGTGCTCA
TGACTCTAAGAGAGCCAGCATCTGCAATTCTTGCAAAAATAGCTGCTCAATCGGAAGTTG
GCATAGTACTAGTGAAACAAGATGTTGCACAGCAGATGATTTCGCTCCTTCATCTGACGA
GTCCAGTAATTCAGTGTCACTTGTTAGAAGCACTTAATGCCATCGCTGCTTGTCCGAATG
CTTCAAAGGTCAGAAGAAAAATGAAGGAAAATGGCGCTGTTCGCCTCCTCTTACCATTCC
TAACAGAAAGCCGCAATACAAAGATTAGAAATGGAGCTTTAAATTTGATTTACGTATTGT
CTAATGATATGCAAGGTGGGGAGCTAATGGAGCAGCTAGAACAAATACATCTGAATACAT
TGATCAACATCATATCATCATCATCCACGACGGATGATGAAAAGGCTGCTGCTGTTGGCA
TACTAAGCAACTTTCCAGTGAGTGACAAGAATGTCACAGACATGTTTATGAAAGCAAACC
TACTGCCCATTTTGGTTTCCATATTGACATCAACTACTCCAACAACAACACCACATTTAC
TAGCTGAGAATGTCTCCGCAGTACTAATCCGATTCACCCTTCCATCAGACAAGAAACTAC
AACACTTGTCTGTCGAAAACGGGGTGATCAATGTTTTAGTAAAGCTCCTCACATGTGGCT
CCATAGTAGCCAAAAGTAGAGCTGCAACATCACTAGCTCAACTATCTCAAAACTCACTGA
CTCTACGAAAATCAAGAAAATCAAGATGGTTTTCATGTGCCCCTCCACATCCTACAGACA
CATTTTGTCAAGTACATGATGGGGATTGCTCTATAAAAACCACATTCTGCTTGGTAAAAG
CGGGGGCAATGCCCCCGCTAGTCCAACTATTGCAAGGCAACGAAAGAGCAGCTGACGAAG
CTGCTCTCCGTTGCCTTGCAACATTACAACAAGATGAGATTTGGGAAAATGGGAGCAACT
TGTTAGTGAAAATGTCATGTGTACAACCAATTATGAAGATTCTTGAAGAAGGGATTAGCT
TAAAAGCTCAAGAGAAATGTCTTTGGATATTGGAAAGGATATTTAGAGTGGAAGCTTATA
GAGTAGAGTATGGTGAATATGCACAAGTTGTGCTAATTGATTTAGCACAAAATGGGAATT
CATTGTTGAAACCTACGGTGGCTAAATTATTAGCACAACTTGAGCTCTTGCAGCAACAAT
CTAGTTACTTTTGAGACAAACAAAAAAAAATCTTCTTTTTTTATCTCAATTATTTGTTGA
TTGATTGAAATGTTGAAATTTGTATAGTATACAGATAAACTTTTTTATGGTCTCATTGTA
CAAATTACACGGAAAAAAAAGGGTTAGTAGAGATGAATGCAACTTGTTGTCTTCAGAAAG
TACATT