Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g066420.2.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4AWP5_SOLLC)
Sequence

ATGTGTCAACCCACACCATACAAACAAACTTGTGAAAAGACCCTCTCCGCAGCAAAGAAT
GTGTCCGATCCAAAGGACTACATCAAGGTTGCATTCGAAGCCACTGTGGCAGACATCAAG
AATGCCATCAAGAACACTGAGCCAGTTAAGAAAGCTGCCAGTGATCCTTACACCAAAGAC
GCTCTCCTTGCTTGTGAAGAGGTGTTTGATCTAGCCGTTGAGGAACTAAGGGGCTCTATC
GCTAGGATTGAGAACTTTGATTTCTCAAAGATGAAGGATATAGTGGATGACCTCAAGTCA
TGGCTTAGCGCTGTCGTTGCTTATGAAGAGACTTGTTTAGATGGTTTCACCAAATCAGAA
TACAGTGCAACCCGTGACGAAATGATGAAGCTAATGAGTACCACCCGGGAGCTGAGTAGC
AATGCTCTTTCCATGGTCAACAACTTTGGTGAAATGATCACACAAAACACAGGCCTTACC
CGCAAATTGTTATCAAACAGTGACTCATTTGTCGAAGCTAGTAACCGTAAGCTCCTTCAA
ATTTCTGCCTCCAAGCCTAATGCTGTGGTTTCTACCAGTGGAGGCGGACAATACAAGACC
ATTCAGGAAGCACTTCAAGCTGTCCCCAGGAGCAGTCCAACTCCTTTCGTTATCCTGATC
AAGGCGGGTACATACAAGGAACACATTGAAATCGAAAAGAACATGCTAAATGTTGTGCTT
ATTGGTGAAGGCCCAACCAAGACCATAATCACCGGTGACCAGGCAGTAGTTCCTAACCGT
ATATCAACATGGCATACAGCCACCCTTGGTGTTTGTGGTGATGGTTTCGTTATGAAGGAC
ATGGGTATTGAAAACACAGCAGGACCCACAAAAGAACAAGCCGTTGCATTGAGAATTAAT
GCTGATAAGGCTGTTCTCTACAACTGCAATATCGATGGTTACCAAGACACGTTATATGCT
CACTCAGGAAGACAATTTTATCGTGATTGTACCATTACAGGCACCATTGATTTCTTGTTT
GGTGATGCAAGTGCTGTTTTCCAAAACTGCAAATTGATTGTGAGGAAACCAGGTCCTAAT
CAAGCTTGCATGATCACTGCTCAAGGAAGGATGAGAAAAGATTCCTTAGGTGGATTCGTT
ATCCAAAATTGTGACATCAAGGCTGATCAAGCACTCACTAGCGCCAATCCACCAGTCAAA
GTCTATCTTGGACGTCCATGGAAGGAGTTTTCCAAGACCATCATAATGCAATCAAACATC
GATGGATTCGTTGATCCATCAGGATGGTCACCATGGAACACAACTGATTTTGGAATACAC
ACATGTTTTTATGCAGAGTATCAGAACAGAGGACCAGGTGCTGCACTTGACAAAAGAGTC
TCCACATGGAGAGGTTACCAAAAGGATATTTCAGGAGACGTTATTAACAGCTTCACTGCC
GGTAAATTCATTAATACACAACAGCCATGGTTACCAATGTTTGATATTCCCTATGAAGCT
GGCATGATGAAGGTGTAA

Peptide Sequence

PEP ID

Solyc01g066420.2.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4AWP5_SOLLC)
Sequence

MCQPTPYKQTCEKTLSAAKNVSDPKDYIKVAFEATVADIKNAIKNTEPVKKAASDPYTKD
ALLACEEVFDLAVEELRGSIARIENFDFSKMKDIVDDLKSWLSAVVAYEETCLDGFTKSE
YSATRDEMMKLMSTTRELSSNALSMVNNFGEMITQNTGLTRKLLSNSDSFVEASNRKLLQ
ISASKPNAVVSTSGGGQYKTIQEALQAVPRSSPTPFVILIKAGTYKEHIEIEKNMLNVVL
IGEGPTKTIITGDQAVVPNRISTWHTATLGVCGDGFVMKDMGIENTAGPTKEQAVALRIN
ADKAVLYNCNIDGYQDTLYAHSGRQFYRDCTITGTIDFLFGDASAVFQNCKLIVRKPGPN
QACMITAQGRMRKDSLGGFVIQNCDIKADQALTSANPPVKVYLGRPWKEFSKTIIMQSNI
DGFVDPSGWSPWNTTDFGIHTCFYAEYQNRGPGAALDKRVSTWRGYQKDISGDVINSFTA
GKFINTQQPWLPMFDIPYEAGMMKV*

Transcript Sequence

Transcript ID

Solyc01g066420.2.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4AWP5_SOLLC)
Sequence

AATCATCAAAAGGAAATAAACACAGCCTTCAATAAAACCCCTCTGAGTTCTTCACTTACA
AGAAGAACCATAGGGGTTGTTTCATAGGGAACTCCCCCCATAAAAAAAAATCCAAAAAAA
CAAAAAAACCAAAAAAATGACAAAGAAGGTGGTAATTGGTGGAATAGCTTCTGTTCTTGT
GGTGGCTTGTGTGGTGGCAGCCTGTGTCACCCTGACTAAACATGATTCTGATACATCATC
AAATGGAGTTGCAACTTCAACAAAGTCAGTTGAATCTATGTGTCAACCCACACCATACAA
ACAAACTTGTGAAAAGACCCTCTCCGCAGCAAAGAATGTGTCCGATCCAAAGGACTACAT
CAAGGTTGCATTCGAAGCCACTGTGGCAGACATCAAGAATGCCATCAAGAACACTGAGCC
AGTTAAGAAAGCTGCCAGTGATCCTTACACCAAAGACGCTCTCCTTGCTTGTGAAGAGGT
GTTTGATCTAGCCGTTGAGGAACTAAGGGGCTCTATCGCTAGGATTGAGAACTTTGATTT
CTCAAAGATGAAGGATATAGTGGATGACCTCAAGTCATGGCTTAGCGCTGTCGTTGCTTA
TGAAGAGACTTGTTTAGATGGTTTCACCAAATCAGAATACAGTGCAACCCGTGACGAAAT
GATGAAGCTAATGAGTACCACCCGGGAGCTGAGTAGCAATGCTCTTTCCATGGTCAACAA
CTTTGGTGAAATGATCACACAAAACACAGGCCTTACCCGCAAATTGTTATCAAACAGTGA
CTCATTTGTCGAAGCTAGTAACCGTAAGCTCCTTCAAATTTCTGCCTCCAAGCCTAATGC
TGTGGTTTCTACCAGTGGAGGCGGACAATACAAGACCATTCAGGAAGCACTTCAAGCTGT
CCCCAGGAGCAGTCCAACTCCTTTCGTTATCCTGATCAAGGCGGGTACATACAAGGAACA
CATTGAAATCGAAAAGAACATGCTAAATGTTGTGCTTATTGGTGAAGGCCCAACCAAGAC
CATAATCACCGGTGACCAGGCAGTAGTTCCTAACCGTATATCAACATGGCATACAGCCAC
CCTTGGTGTTTGTGGTGATGGTTTCGTTATGAAGGACATGGGTATTGAAAACACAGCAGG
ACCCACAAAAGAACAAGCCGTTGCATTGAGAATTAATGCTGATAAGGCTGTTCTCTACAA
CTGCAATATCGATGGTTACCAAGACACGTTATATGCTCACTCAGGAAGACAATTTTATCG
TGATTGTACCATTACAGGCACCATTGATTTCTTGTTTGGTGATGCAAGTGCTGTTTTCCA
AAACTGCAAATTGATTGTGAGGAAACCAGGTCCTAATCAAGCTTGCATGATCACTGCTCA
AGGAAGGATGAGAAAAGATTCCTTAGGTGGATTCGTTATCCAAAATTGTGACATCAAGGC
TGATCAAGCACTCACTAGCGCCAATCCACCAGTCAAAGTCTATCTTGGACGTCCATGGAA
GGAGTTTTCCAAGACCATCATAATGCAATCAAACATCGATGGATTCGTTGATCCATCAGG
ATGGTCACCATGGAACACAACTGATTTTGGAATACACACATGTTTTTATGCAGAGTATCA
GAACAGAGGACCAGGTGCTGCACTTGACAAAAGAGTCTCCACATGGAGAGGTTACCAAAA
GGATATTTCAGGAGACGTTATTAACAGCTTCACTGCCGGTAAATTCATTAATACACAACA
GCCATGGTTACCAATGTTTGATATTCCCTATGAAGCTGGCATGATGAAGGTGTAATTACA
TATACCATTCATCCTGTAATTTTTTCTAATTATTCAAAATTATATTTCCTATTTCCTTTG
TTCTACAACCATTATTTTCTTTTCATTTTCTCGTTCATCCTATAACTTAAAACTAATCAA
CAATAACAAAGACAACTAGTAAGTTATCAATAAAATTCCAAGATAACTAAGACGCAGC