Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g057220.3.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4AVT5_SOLLC)
Sequence

ATGAAAGGCGGGAAGATTTTTGCATTTGGTATATCGATTATCCTGGTTGTTGGAGTAGTT
ATTGCAATTATTGCAAGCAATAATCGTACACAAGACTCTTCGGACAATGATGAAAAGGAT
GACAAAGTGCTTTCTACCACATCCAAATCCATTGCTTCTGTTTGTTCACAAACTGATTTT
AAGAAATCATGTGTTAATAGCCTTAGCTCTATGGCCAACAACCAAAGCGCCACCCCAAAG
GAATTCCTCCTAAAAGCCATTGAGGTGGCCATTCAGGAAGTTAGAATCGGAATAGACAGG
TCCACGTATATTGGCAAAGCAGAAGCTCATGACCCCTTGCAAAAGATGGCCACTGATGAT
TGCAAGGAATTATTGGAATACGCGATTGATGAGCTTCAAGCATCGTTCTCTTCTGTGGGT
GATAGCAGCCTCCACACAATCGCTGAAAGGGAAACAGAACTCAAAAACTGGCTCAGTGCT
GTTTTCTCTTACCAACAAACCTGCATAGATGGTTTCACTCAACCAGAAATTCAGAAAACC
ATTTCTACCTCTCTCCTAAATGCAACACAACTCACGGACAATGTTCTTGCAATGGTCGAT
GCAATGACTGAAATTCTTTCTAAATTTAATATTCCCATTGGGAAGAAGACTGATAATAAA
TCAGCAGAAACAGCAGCATCTCGGCGATTGTTAGAAAATGAAGACAATGACGAGCAGCAA
GCCAGCAATACAAAGAGCGGAGGATATCCTGCATGGCTTTCTGCTAGTGATAGAAAATTG
TTGGCTTTTAGCAATAACGGCAACCCAGCACCAAACGCTGTGGTAGCTAAGGATGGATCT
GGACAATTTAACACAATTGCAGCAGCTCTGGCTGCGTACCCTAAGAACCTAAAAGGAAGG
TATACTATATATGTGAAGGCCGGAATTTATGATGAATACATAACTGTCACAAAAGATCAA
GTTAACATATTTATGTATGGAGATGGACCGCGAAAGACGATAATTACAGGACATAAATCC
GCACTTGCTGGTGTGTCTACTTATCAGAGTGCTTCCTTCAGTGCCATTGGAAATGGATTT
ATAGGCAAGTCCATGGGTTTCCAAAACACAGCAGGACCGGAGGGGCACCAGGCGGTAGCC
CTCCGTGTTCAATCTGATATGTCTGCCTTTTACAATTGTAGAATGGATGGATATCAAGAC
ACCTTGTATGTTCAAACACATAGACAGTTTTACCGCAATTGTGTCGTGTCAGGCACAGTT
GATTTCATCTTTGGTGACTCGTCAGCTATCCTCCAAAACTGCTTAATTATTGCAAGGAAG
CCAATGGAAAAACAACAAAATACAGTGACAGCTCAAGGAAGAACGAACATTCGGGCAACC
ACAGGGTTAGTAATCCAAAATTGTCGCATTGTTCCCGAGCAATTACTAGAACCTCTGCGT
TTCAAGATTCCTACCTTCTTAGGAAGGCCATGGAAGATGTATGCAAGAACTGTTGTCATG
GAATCAACTTTGGCAGATTTCATACAACCTGCAGTTTGGATGCCCTGGGATGGAAATTTT
GCCCTTGACACATGCGTATATGCTGAGTACGCAAATCGTGGTCCAGGAGCCAATACTAAC
AATAGGGTCAAATGGAAGGGATTCAAAGTCATCACGGACAGGAATGAAGCACTTCAATAT
ACAACAACTCCATTTATTCAAGGAAATCAGTGGTTGCAATCCACAGGTGCCCCACACTTC
CTTGGCCTGAAAAACTAG

Peptide Sequence

PEP ID

Solyc01g057220.3.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4AVT5_SOLLC)
Sequence

MKGGKIFAFGISIILVVGVVIAIIASNNRTQDSSDNDEKDDKVLSTTSKSIASVCSQTDF
KKSCVNSLSSMANNQSATPKEFLLKAIEVAIQEVRIGIDRSTYIGKAEAHDPLQKMATDD
CKELLEYAIDELQASFSSVGDSSLHTIAERETELKNWLSAVFSYQQTCIDGFTQPEIQKT
ISTSLLNATQLTDNVLAMVDAMTEILSKFNIPIGKKTDNKSAETAASRRLLENEDNDEQQ
ASNTKSGGYPAWLSASDRKLLAFSNNGNPAPNAVVAKDGSGQFNTIAAALAAYPKNLKGR
YTIYVKAGIYDEYITVTKDQVNIFMYGDGPRKTIITGHKSALAGVSTYQSASFSAIGNGF
IGKSMGFQNTAGPEGHQAVALRVQSDMSAFYNCRMDGYQDTLYVQTHRQFYRNCVVSGTV
DFIFGDSSAILQNCLIIARKPMEKQQNTVTAQGRTNIRATTGLVIQNCRIVPEQLLEPLR
FKIPTFLGRPWKMYARTVVMESTLADFIQPAVWMPWDGNFALDTCVYAEYANRGPGANTN
NRVKWKGFKVITDRNEALQYTTTPFIQGNQWLQSTGAPHFLGLKN*

Transcript Sequence

Transcript ID

Solyc01g057220.3.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4AVT5_SOLLC)
Sequence

GGTGACTCAAAGAGACCTCCATAGTCCAAACTAATTTCCATTTTTGTCTCTCTTTTCAAT
ATCCTCTCTACACATTTAATCTTAGAAATATAAATAATGAAAGGCGGGAAGATTTTTGCA
TTTGGTATATCGATTATCCTGGTTGTTGGAGTAGTTATTGCAATTATTGCAAGCAATAAT
CGTACACAAGACTCTTCGGACAATGATGAAAAGGATGACAAAGTGCTTTCTACCACATCC
AAATCCATTGCTTCTGTTTGTTCACAAACTGATTTTAAGAAATCATGTGTTAATAGCCTT
AGCTCTATGGCCAACAACCAAAGCGCCACCCCAAAGGAATTCCTCCTAAAAGCCATTGAG
GTGGCCATTCAGGAAGTTAGAATCGGAATAGACAGGTCCACGTATATTGGCAAAGCAGAA
GCTCATGACCCCTTGCAAAAGATGGCCACTGATGATTGCAAGGAATTATTGGAATACGCG
ATTGATGAGCTTCAAGCATCGTTCTCTTCTGTGGGTGATAGCAGCCTCCACACAATCGCT
GAAAGGGAAACAGAACTCAAAAACTGGCTCAGTGCTGTTTTCTCTTACCAACAAACCTGC
ATAGATGGTTTCACTCAACCAGAAATTCAGAAAACCATTTCTACCTCTCTCCTAAATGCA
ACACAACTCACGGACAATGTTCTTGCAATGGTCGATGCAATGACTGAAATTCTTTCTAAA
TTTAATATTCCCATTGGGAAGAAGACTGATAATAAATCAGCAGAAACAGCAGCATCTCGG
CGATTGTTAGAAAATGAAGACAATGACGAGCAGCAAGCCAGCAATACAAAGAGCGGAGGA
TATCCTGCATGGCTTTCTGCTAGTGATAGAAAATTGTTGGCTTTTAGCAATAACGGCAAC
CCAGCACCAAACGCTGTGGTAGCTAAGGATGGATCTGGACAATTTAACACAATTGCAGCA
GCTCTGGCTGCGTACCCTAAGAACCTAAAAGGAAGGTATACTATATATGTGAAGGCCGGA
ATTTATGATGAATACATAACTGTCACAAAAGATCAAGTTAACATATTTATGTATGGAGAT
GGACCGCGAAAGACGATAATTACAGGACATAAATCCGCACTTGCTGGTGTGTCTACTTAT
CAGAGTGCTTCCTTCAGTGCCATTGGAAATGGATTTATAGGCAAGTCCATGGGTTTCCAA
AACACAGCAGGACCGGAGGGGCACCAGGCGGTAGCCCTCCGTGTTCAATCTGATATGTCT
GCCTTTTACAATTGTAGAATGGATGGATATCAAGACACCTTGTATGTTCAAACACATAGA
CAGTTTTACCGCAATTGTGTCGTGTCAGGCACAGTTGATTTCATCTTTGGTGACTCGTCA
GCTATCCTCCAAAACTGCTTAATTATTGCAAGGAAGCCAATGGAAAAACAACAAAATACA
GTGACAGCTCAAGGAAGAACGAACATTCGGGCAACCACAGGGTTAGTAATCCAAAATTGT
CGCATTGTTCCCGAGCAATTACTAGAACCTCTGCGTTTCAAGATTCCTACCTTCTTAGGA
AGGCCATGGAAGATGTATGCAAGAACTGTTGTCATGGAATCAACTTTGGCAGATTTCATA
CAACCTGCAGTTTGGATGCCCTGGGATGGAAATTTTGCCCTTGACACATGCGTATATGCT
GAGTACGCAAATCGTGGTCCAGGAGCCAATACTAACAATAGGGTCAAATGGAAGGGATTC
AAAGTCATCACGGACAGGAATGAAGCACTTCAATATACAACAACTCCATTTATTCAAGGA
AATCAGTGGTTGCAATCCACAGGTGCCCCACACTTCCTTGGCCTGAAAAACTAGGTGACA
GTGACAAGTATAAATGGAGCAGAGTAGTAGAACAAGTAACTGTAGCACTAATAAACTCGT
AGAGTAAGTTTTTAATTTGTAATATGTAAAGTTAGGGTAACTATGAGGGTGAGAGATAGA
TCTAAATTGTCATCCTTACCTTTTCCCTAAACTTGATAGGTTCAACAATCAGTCTACATA
CCTTATAAAATAAATCAATATACTAATTTGAGAGTTTTCACAATATTCATATTTGTTTAC
TGTCACAG