Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g049810.3.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A124SBK7_CYNCS)
Sequence

ATGCTACATCGTGCTTTAGATGAAGACAACTTCATTCTCAGCCAATTCATTCACAAATGT
TCCGCCCTTGGCTTTGTCAGCTATGCATATTCAATTTTCACTTCCAACCCAAATCCAAAC
ATATATCTTTACAATACTTTGATCAGTATTTTCTCTAGACAACAACATTTATCTAAAGAT
GCAATTTGCCTTTATAAACAAGCTCGAACCATTGGCTTATATCATGATACTTACTCTATC
CCTTTTGTGTTGAATGCTGTAACTTGTCTCATCACCTCTACGCAAATTCATTGTGAAGCT
ATTTTAACTGGATTGAACAATGATGTACATGTAGCAACGTCCCTTGTACGGATATATTCT
TCTTTTGGGTGCATTTCTGATGCACGTAAGGTGTTTGATGAAATGCGTAACAAAGATGTG
AGTTTGTGGAATGCCATGATAGCGGGTTATGTTAAGGCTCATGATATGGACACCGCCAAG
TACCTGTTTGTTAATATGCTGGAGAAGAATGTGGTTTCTTGGACTACCATCATTGCGGGC
TACACTCAGGGGAATCAGTTTTCTCAGGCTATAGGTGTCTTCAGGAAAATGATGAGTGTG
GAGGTTAGTGCTAAGCCTGATGAAGTAACCATGTTAGTTGCACTTTCAGCTTGTGCCCAC
TTGGGTGAGCATGAGTTGGGTGAATGGATCCATAGTTATATTATAAAACACAGGTTTCGT
AGAACTGTATCTCTTAACAATACACTTATTGATATGTATGCGAAATCAGGAAATGTAAAG
AAGGCAGTAGAATTGTTTGAAAGCATGGAAATTAGGAGTGGTGTTACTTGGTCAACGGTG
ATTTCTGCATTGGCTGTCAATGGATGTGGAAGAGAAGCAATTAACATGTTTTCTCGGATG
GAAATGGTTGGAATTAGGCCAAACAGTGTCACCTTTATAGCACTATTATCTGCATGTAGC
CATGCAGGACTCGTGGAGGAAGGCAGATTGTATTTTAAGACAATGGAAGAAAATCATGGT
ATTAGTCCTGACATCAGACACTATGGTTGCATGGTTGATCTTTTTGGGCGTGCTGGTTAT
CTCGACGAGGCTGCAAATATGGTTAAAATGATGCCGTTTGAAGCAAATGCAGCAATTTGG
GGATCACTTCTTGCTGCAGCCAGGAACCAAGGTCATGTTGAACTTGGGGAGCAAGCTCTG
CAGCATCTAACTGAAGTTGAACCACATAATAGTGGAAATTATTCCCTTGTGTCCAATACA
TATGCTGCTCTTGGTAGGTGGAGTGAAGCTAGGGTAGCAAGAAAGATCATGAGGGACACA
GGAGTCCAAAAGTCGCCAGGCGGTAGCTTCATCAAAGTGAAAGATAAAATTTATTATTTC
TATTCAGGAGACAGATCACATCCTCAATGTGAGAGAATATACAGAGTTCTATCACACCTA
AACAGGGCGTCAAAGACGATACTGCATGAATATTGGGAATATGTAGAGCTGCTTGATGCT
GATAGCCCTCAAGAGGACCACTTATAA

Peptide Sequence

PEP ID

Solyc01g049810.3.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A124SBK7_CYNCS)
Sequence

MLHRALDEDNFILSQFIHKCSALGFVSYAYSIFTSNPNPNIYLYNTLISIFSRQQHLSKD
AICLYKQARTIGLYHDTYSIPFVLNAVTCLITSTQIHCEAILTGLNNDVHVATSLVRIYS
SFGCISDARKVFDEMRNKDVSLWNAMIAGYVKAHDMDTAKYLFVNMLEKNVVSWTTIIAG
YTQGNQFSQAIGVFRKMMSVEVSAKPDEVTMLVALSACAHLGEHELGEWIHSYIIKHRFR
RTVSLNNTLIDMYAKSGNVKKAVELFESMEIRSGVTWSTVISALAVNGCGREAINMFSRM
EMVGIRPNSVTFIALLSACSHAGLVEEGRLYFKTMEENHGISPDIRHYGCMVDLFGRAGY
LDEAANMVKMMPFEANAAIWGSLLAAARNQGHVELGEQALQHLTEVEPHNSGNYSLVSNT
YAALGRWSEARVARKIMRDTGVQKSPGGSFIKVKDKIYYFYSGDRSHPQCERIYRVLSHL
NRASKTILHEYWEYVELLDADSPQEDHL*

Transcript Sequence

Transcript ID

Solyc01g049810.3.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A124SBK7_CYNCS)
Sequence

ATGCTACATCGTGCTTTAGATGAAGACAACTTCATTCTCAGCCAATTCATTCACAAATGT
TCCGCCCTTGGCTTTGTCAGCTATGCATATTCAATTTTCACTTCCAACCCAAATCCAAAC
ATATATCTTTACAATACTTTGATCAGTATTTTCTCTAGACAACAACATTTATCTAAAGAT
GCAATTTGCCTTTATAAACAAGCTCGAACCATTGGCTTATATCATGATACTTACTCTATC
CCTTTTGTGTTGAATGCTGTAACTTGTCTCATCACCTCTACGCAAATTCATTGTGAAGCT
ATTTTAACTGGATTGAACAATGATGTACATGTAGCAACGTCCCTTGTACGGATATATTCT
TCTTTTGGGTGCATTTCTGATGCACGTAAGGTGTTTGATGAAATGCGTAACAAAGATGTG
AGTTTGTGGAATGCCATGATAGCGGGTTATGTTAAGGCTCATGATATGGACACCGCCAAG
TACCTGTTTGTTAATATGCTGGAGAAGAATGTGGTTTCTTGGACTACCATCATTGCGGGC
TACACTCAGGGGAATCAGTTTTCTCAGGCTATAGGTGTCTTCAGGAAAATGATGAGTGTG
GAGGTTAGTGCTAAGCCTGATGAAGTAACCATGTTAGTTGCACTTTCAGCTTGTGCCCAC
TTGGGTGAGCATGAGTTGGGTGAATGGATCCATAGTTATATTATAAAACACAGGTTTCGT
AGAACTGTATCTCTTAACAATACACTTATTGATATGTATGCGAAATCAGGAAATGTAAAG
AAGGCAGTAGAATTGTTTGAAAGCATGGAAATTAGGAGTGGTGTTACTTGGTCAACGGTG
ATTTCTGCATTGGCTGTCAATGGATGTGGAAGAGAAGCAATTAACATGTTTTCTCGGATG
GAAATGGTTGGAATTAGGCCAAACAGTGTCACCTTTATAGCACTATTATCTGCATGTAGC
CATGCAGGACTCGTGGAGGAAGGCAGATTGTATTTTAAGACAATGGAAGAAAATCATGGT
ATTAGTCCTGACATCAGACACTATGGTTGCATGGTTGATCTTTTTGGGCGTGCTGGTTAT
CTCGACGAGGCTGCAAATATGGTTAAAATGATGCCGTTTGAAGCAAATGCAGCAATTTGG
GGATCACTTCTTGCTGCAGCCAGGAACCAAGGTCATGTTGAACTTGGGGAGCAAGCTCTG
CAGCATCTAACTGAAGTTGAACCACATAATAGTGGAAATTATTCCCTTGTGTCCAATACA
TATGCTGCTCTTGGTAGGTGGAGTGAAGCTAGGGTAGCAAGAAAGATCATGAGGGACACA
GGAGTCCAAAAGTCGCCAGGCGGTAGCTTCATCAAAGTGAAAGATAAAATTTATTATTTC
TATTCAGGAGACAGATCACATCCTCAATGTGAGAGAATATACAGAGTTCTATCACACCTA
AACAGGGCGTCAAAGACGATACTGCATGAATATTGGGAATATGTAGAGCTGCTTGATGCT
GATAGCCCTCAAGAGGACCACTTATAA