Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g021640.3.1
CDS Infomation

Katanin p80 subunit B1 (AHRD V3.3 *** A0A103XBA3_CYNCS)
Sequence

ATGCCCAAAGAGCTTCCTGGATTTTACTATGATGCGGAGAAGAACAGATATTTCCCTATC
AAGGGTCCGATTCCTGGTTCTTCTAAGAAACGAAAATCGCCTTCACCTATAGTCTCTACT
AAGGAGAGAGACAAAGGGAAATGCATGAAGTCAGGGAGCAATAATTTACTCCATGTTAGG
GAGTTGTGCGGTAAAGTCATTGCATCCAGAAAAGGGAAACTAAATTTTCAAATGGAATTC
CTGAAGAAACAAGCATCATACCCTCTGATTTGGAAGTATGATGGCACACAAAGAATTGTT
AACACTGCTTTGGAGCACTTGACTGTTGATCAAAACACGCCGGAGGGCCCGGTAGAGACT
GATATTCTGTTGACAGGTGGCATGAATGGCTCATTATGTATATTTGAAGTTGGAAAGGTT
GGACAACAATTTAATCAAGGGGTAAAATGCTTGCCAGATCGTGTTTGGACTCTCAAAGAC
AGATACAGGGAAGGGTATTATGACTCACCAGGACATGTCTGGAGACCTCCAGGAGCTTTT
GTACATATGCCATCGAATATATCTTGTATAAAGATGTCCCAAAAGCACCCTGCACCTGTT
AGTGATGCTTCTTTAAAGCATATTCTGATAACTACTATGGGAGCTGAATCATCTGGTGGA
ACAGTCAACATTCTGAACCTCAGTGAACCACTAGATCTTAATTCAAGTATACCTACTGAT
AGAACAAGAATTTCTGAGATTGCTTCATTTGAGTGTACAGTTTGGACAGCAGATCGTAGT
CATGATCAGAAACAAGCAGTAGTAGGAACCAACAGAGGAGCTGCAATGTTGGACATAGAA
ACAGGAGTGAAATCCTGGGTTCGTCGGTCTAAAAGCGACGTGTTCTCCATACAATTTGAT
AATTCAGAAAATACTGTTTTATGTGGGCTAAGAAATGGAACAATTTTATCCATCGATACC
CGTCTAAAACCAGGAGAATTTTCTGGTAGGCTTCCTCAGAATAGAATTCCGTGCCATTCT
AGTGGGTCTTCTAGTAGGTTTAAAAGCGCTGCTAGAGATTCCTTCCAGCTCAAAGGGAGG
ATGTATCACTGCAACACAATCTCTATGCCTTCATCTGTATGTTGTTTGGCACCTTTGAGA
CTTTATGAGCAATGTTTCCTGGCAAGCTCTATGGATGGATCGATAAATCTTTATGATCGT
CGTCTAATGAGGGGTGCAATTCAATCATATCTGGGAAATAAAAATTCTCATAGTCGGATA
CAGCTTGGAGTTGACTCATCAGAGACAATGGTCATGTCAGGTGGAGAGGACTATCATTTG
CGGCTATGGAGTATCAAATCTGGCGAACTGCTATTCGATGATAAATTCATGGATTCGATC
CCCTCAGTTGTAAGCTGGCCAAAAACTGAAGGTCTCCTAGGAATGGGAAAACAGATACAA
GGTGCATGGCTTGGATCCGAAGAAGGGTTGTTTTTCATGGACTGGCCTTGA

Peptide Sequence

PEP ID

Solyc01g021640.3.1
PEP Infomation

Katanin p80 subunit B1 (AHRD V3.3 *** A0A103XBA3_CYNCS)
Sequence

MPKELPGFYYDAEKNRYFPIKGPIPGSSKKRKSPSPIVSTKERDKGKCMKSGSNNLLHVR
ELCGKVIASRKGKLNFQMEFLKKQASYPLIWKYDGTQRIVNTALEHLTVDQNTPEGPVET
DILLTGGMNGSLCIFEVGKVGQQFNQGVKCLPDRVWTLKDRYREGYYDSPGHVWRPPGAF
VHMPSNISCIKMSQKHPAPVSDASLKHILITTMGAESSGGTVNILNLSEPLDLNSSIPTD
RTRISEIASFECTVWTADRSHDQKQAVVGTNRGAAMLDIETGVKSWVRRSKSDVFSIQFD
NSENTVLCGLRNGTILSIDTRLKPGEFSGRLPQNRIPCHSSGSSSRFKSAARDSFQLKGR
MYHCNTISMPSSVCCLAPLRLYEQCFLASSMDGSINLYDRRLMRGAIQSYLGNKNSHSRI
QLGVDSSETMVMSGGEDYHLRLWSIKSGELLFDDKFMDSIPSVVSWPKTEGLLGMGKQIQ
GAWLGSEEGLFFMDWP*

Transcript Sequence

Transcript ID

Solyc01g021640.3.1
Transcript Infomation

Katanin p80 subunit B1 (AHRD V3.3 *** A0A103XBA3_CYNCS)
Sequence

GGGCCATTGACCTTATTCCCCATGCCGACCCGCTACTCATTCAAGCTCTTCTCTTTCTCC
TCTGGCGGCAAAAGTTGCAGAGCTGATTAAGTCATTACTCTGTAGATTGTTGCAAAGTAT
CAGAGATGCCCAAAGAGCTTCCTGGATTTTACTATGATGCGGAGAAGAACAGATATTTCC
CTATCAAGGGTCCGATTCCTGGTTCTTCTAAGAAACGAAAATCGCCTTCACCTATAGTCT
CTACTAAGGAGAGAGACAAAGGGAAATGCATGAAGTCAGGGAGCAATAATTTACTCCATG
TTAGGGAGTTGTGCGGTAAAGTCATTGCATCCAGAAAAGGGAAACTAAATTTTCAAATGG
AATTCCTGAAGAAACAAGCATCATACCCTCTGATTTGGAAGTATGATGGCACACAAAGAA
TTGTTAACACTGCTTTGGAGCACTTGACTGTTGATCAAAACACGCCGGAGGGCCCGGTAG
AGACTGATATTCTGTTGACAGGTGGCATGAATGGCTCATTATGTATATTTGAAGTTGGAA
AGGTTGGACAACAATTTAATCAAGGGGTAAAATGCTTGCCAGATCGTGTTTGGACTCTCA
AAGACAGATACAGGGAAGGGTATTATGACTCACCAGGACATGTCTGGAGACCTCCAGGAG
CTTTTGTACATATGCCATCGAATATATCTTGTATAAAGATGTCCCAAAAGCACCCTGCAC
CTGTTAGTGATGCTTCTTTAAAGCATATTCTGATAACTACTATGGGAGCTGAATCATCTG
GTGGAACAGTCAACATTCTGAACCTCAGTGAACCACTAGATCTTAATTCAAGTATACCTA
CTGATAGAACAAGAATTTCTGAGATTGCTTCATTTGAGTGTACAGTTTGGACAGCAGATC
GTAGTCATGATCAGAAACAAGCAGTAGTAGGAACCAACAGAGGAGCTGCAATGTTGGACA
TAGAAACAGGAGTGAAATCCTGGGTTCGTCGGTCTAAAAGCGACGTGTTCTCCATACAAT
TTGATAATTCAGAAAATACTGTTTTATGTGGGCTAAGAAATGGAACAATTTTATCCATCG
ATACCCGTCTAAAACCAGGAGAATTTTCTGGTAGGCTTCCTCAGAATAGAATTCCGTGCC
ATTCTAGTGGGTCTTCTAGTAGGTTTAAAAGCGCTGCTAGAGATTCCTTCCAGCTCAAAG
GGAGGATGTATCACTGCAACACAATCTCTATGCCTTCATCTGTATGTTGTTTGGCACCTT
TGAGACTTTATGAGCAATGTTTCCTGGCAAGCTCTATGGATGGATCGATAAATCTTTATG
ATCGTCGTCTAATGAGGGGTGCAATTCAATCATATCTGGGAAATAAAAATTCTCATAGTC
GGATACAGCTTGGAGTTGACTCATCAGAGACAATGGTCATGTCAGGTGGAGAGGACTATC
ATTTGCGGCTATGGAGTATCAAATCTGGCGAACTGCTATTCGATGATAAATTCATGGATT
CGATCCCCTCAGTTGTAAGCTGGCCAAAAACTGAAGGTCTCCTAGGAATGGGAAAACAGA
TACAAGGTGCATGGCTTGGATCCGAAGAAGGGTTGTTTTTCATGGACTGGCCTTGAGGAA
ATGTCTTCTTGGTCTCTTACTTGGAATGCACATATTACTGTCAGCTGGTTTTGATTAGGG
ATGGCAATGAGGCGGTGCAGACGTGCAGTTTTGATGTTATACAGGCGCAGGGCGGGTTGT
CTTCTTTTATTTATTATAAAATTTCCCTGTCATATTTATTCGTTATTTTAATGTTATGCT
TCCCCGTTAATAATTAATTAATTAGTACTGTTGTGTTTTTTTTTCTGTAAAAGCTTTAAT
TTTCTTTACCTTTTTTCTTTGATATTTTCCCTCTTTTTTAGAGGGAATGTAAGTTTTTTT
TTCCTTTTTTCATTAACTTCCTACATGGTGGTTCTGTAAGATTTTTTTCTTTTTGTTCCA
GTTCAATTTGTGTTGTTAAAGTTGTGTCATTAACGAGTCGTTCTGAATGATTACTGAATC
AGA