Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g020340.2.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XHN5_CYNCS)
Sequence

ATGATTTCCCACCAAATTGAATGTTTTTTCCAACGTTCAAAAACAATGCTTCATCTTCTC
CAACTTCATTCTCTATTCATCAAAACAGCCATTCATCACGATGAGTATCGTCTCTCCCAA
TTCATATCATTATCTTCTTCAATATCCCTTCAATATACCCGTACATTTTTCGATAATTCT
CACATCATACCATCAATCTTCGCATGGAACACAATGATGAGGGCATATTCCCAATTAGAG
TCTCTGAAGCTCTTCAAACAGTTCCAAAAGATCGGATTAAAACCAGATAAATTCACATTC
CCTGTTGTGCTAAAGGTTTCTGGGCATTGTTTGATGATAGGAACTGGCGGATCATTGCAT
TCGATGGCTGTGAAGTCGGGTTTTGGTTCAGATTTACATGTGGACAATACTCTTTTGAGA
ATGTATGCTGTATTTGGTGTGATCAAGTTTGCAAGACAGGTGTTTGATGAAATGCTTCAG
AGGGATATAGTTTCTTGGAGTTCAATGATGTCTGCTTACGTTCATTGTAACTTGCCTTCA
GATGCTCTGCTCCTGTTCCAATGTATGAAGCTAGCAAATGAAAAGCCAAATTCTGTCACT
TTGGTTAGCTTGCTGGGGGCATGTACTCATATCCTGAATATCGGATTAGGTAAATGTATT
CACTCGCACATTGTTACCAGTGGTATTGAACTACATGTTGAGCTGGAAACAGCCCTCCTT
GGGATGTATGCAAAATGTGGTCATATACAGCAGGCTTTCCGCATATTCAATTCGATGGAT
GATAAAAATCTGCAGACTTGGACCATCATGATTTCTGGTCTTGCTGATCATGGACATGGA
GAAGAAGCTATGTCCTTGTTTGCCAGAATGGAAGAGTCTGGCTTTAGGCCGGATAGCTTA
TCATTTTCTGCAATCTTATATGCTTGTAGTCATAATGGCTTTGTTGATGCGGGCCGTGAA
TATTTTGAAAAAATGGCAAGTATTTATGACATCAGGCCAACTATGGAACATTACGGATGC
ATGGTGGATATGTATGGACGTGCTGGAGAATTAGAAGAAGCTTATGATATTATAAGGAGC
ATGCCTACAGAGCCTAATTCTGTGATATTGAGGAGTTTCATTAGTGCTTGTAAGCATCAT
GGTCATATTCCTTGTGCAGAAGAAAATATAAGGGAGATTCTCCTCAAAATAGAGCCTGAT
CTCGGATCAAACTATGTACTTGCATCTAGTTTGTCTCATCTTTTTGGTAATTGCAGCGAT
GCGAACAGCCTAAGATCGTCTATGAAAGTAAAAGGGATAAAGAAATATCCTGGTAGCAGT
TGGGTGCAGTCACTTGATAGTCTTGCCGAAGGAAGCAGTTGA

Peptide Sequence

PEP ID

Solyc01g020340.2.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XHN5_CYNCS)
Sequence

MISHQIECFFQRSKTMLHLLQLHSLFIKTAIHHDEYRLSQFISLSSSISLQYTRTFFDNS
HIIPSIFAWNTMMRAYSQLESLKLFKQFQKIGLKPDKFTFPVVLKVSGHCLMIGTGGSLH
SMAVKSGFGSDLHVDNTLLRMYAVFGVIKFARQVFDEMLQRDIVSWSSMMSAYVHCNLPS
DALLLFQCMKLANEKPNSVTLVSLLGACTHILNIGLGKCIHSHIVTSGIELHVELETALL
GMYAKCGHIQQAFRIFNSMDDKNLQTWTIMISGLADHGHGEEAMSLFARMEESGFRPDSL
SFSAILYACSHNGFVDAGREYFEKMASIYDIRPTMEHYGCMVDMYGRAGELEEAYDIIRS
MPTEPNSVILRSFISACKHHGHIPCAEENIREILLKIEPDLGSNYVLASSLSHLFGNCSD
ANSLRSSMKVKGIKKYPGSSWVQSLDSLAEGSS*

Transcript Sequence

Transcript ID

Solyc01g020340.2.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XHN5_CYNCS)
Sequence

AATTTATTTAATCAAATAATCAAATAATTATGTACGGGTATATCACAGTTTCTTTTCCTT
CCCTTGTTTCCACAAAAATTATGCAAAATGATTTCCCACCAAATTGAATGTTTTTTCCAA
CGTTCAAAAACAATGCTTCATCTTCTCCAACTTCATTCTCTATTCATCAAAACAGCCATT
CATCACGATGAGTATCGTCTCTCCCAATTCATATCATTATCTTCTTCAATATCCCTTCAA
TATACCCGTACATTTTTCGATAATTCTCACATCATACCATCAATCTTCGCATGGAACACA
ATGATGAGGGCATATTCCCAATTAGAGTCTCTGAAGCTCTTCAAACAGTTCCAAAAGATC
GGATTAAAACCAGATAAATTCACATTCCCTGTTGTGCTAAAGGTTTCTGGGCATTGTTTG
ATGATAGGAACTGGCGGATCATTGCATTCGATGGCTGTGAAGTCGGGTTTTGGTTCAGAT
TTACATGTGGACAATACTCTTTTGAGAATGTATGCTGTATTTGGTGTGATCAAGTTTGCA
AGACAGGTGTTTGATGAAATGCTTCAGAGGGATATAGTTTCTTGGAGTTCAATGATGTCT
GCTTACGTTCATTGTAACTTGCCTTCAGATGCTCTGCTCCTGTTCCAATGTATGAAGCTA
GCAAATGAAAAGCCAAATTCTGTCACTTTGGTTAGCTTGCTGGGGGCATGTACTCATATC
CTGAATATCGGATTAGGTAAATGTATTCACTCGCACATTGTTACCAGTGGTATTGAACTA
CATGTTGAGCTGGAAACAGCCCTCCTTGGGATGTATGCAAAATGTGGTCATATACAGCAG
GCTTTCCGCATATTCAATTCGATGGATGATAAAAATCTGCAGACTTGGACCATCATGATT
TCTGGTCTTGCTGATCATGGACATGGAGAAGAAGCTATGTCCTTGTTTGCCAGAATGGAA
GAGTCTGGCTTTAGGCCGGATAGCTTATCATTTTCTGCAATCTTATATGCTTGTAGTCAT
AATGGCTTTGTTGATGCGGGCCGTGAATATTTTGAAAAAATGGCAAGTATTTATGACATC
AGGCCAACTATGGAACATTACGGATGCATGGTGGATATGTATGGACGTGCTGGAGAATTA
GAAGAAGCTTATGATATTATAAGGAGCATGCCTACAGAGCCTAATTCTGTGATATTGAGG
AGTTTCATTAGTGCTTGTAAGCATCATGGTCATATTCCTTGTGCAGAAGAAAATATAAGG
GAGATTCTCCTCAAAATAGAGCCTGATCTCGGATCAAACTATGTACTTGCATCTAGTTTG
TCTCATCTTTTTGGTAATTGCAGCGATGCGAACAGCCTAAGATCGTCTATGAAAGTAAAA
GGGATAAAGAAATATCCTGGTAGCAGTTGGGTGCAGTCACTTGATAGTCTTGCCGAAGGA
AGCAGTTGA