Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g010740.3.1
CDS Infomation

Pectate lyase (AHRD V3.3 *** K4ATR7_SOLLC)
Sequence

ATGGCCTTTATCAGTGGGAATTCAATTTTGTTAGTATTGTTCATATGGTTAGCTTCATTA
GTCCCACATTTACATGCCAGAATTGCTGAGTTTGATCCATATTTGGAAAAACAAGCTTTG
GAAGCCCTCAACTCTTCACTTGAAGCATATACTAATAATCCTGAGGAAATAACTAATGCA
TTCAACAAAGAAGTTGGAAATGCATTGCTGAAGTATAAAAGCTTAAGGAGGCATCTTAAA
GAAAAAGATAAATGCATGGCAACCAATCCAATTGATAGATGCTGGAGGTGTGACAAAAAT
TGGGCTGAAAACAGGATGGATTTGGAAGAGTGTGCTAGGGGATTTGGCCACAAGACGACC
GGTGGTAAAAATGGCAAGTACTATGTTGTCACCGATGAATCAGATGATAACGTGCAGGAA
CCAAAACCAGGGACCCTTCGTCATGCTGTGATTCAAGAGGAGCCATTGTGGATCATCTTT
GAGAAATCAATGGTGATCAAGTTGCGACAAGAACTTATGATCACGAGTGACAAGACAATC
GATGGCAGGGGAGTCGCTGTTCACATAGCTTATGGTGCTGGATTAATGATCCAATTCGTG
CATAATGTCATAATCCACAACATCAGGATTCAGAATATCATATCTACTAATGGTGGCATG
ATAAGAGATTCTATTAACCATATTGGTCTAAGGACAGTGAGCGATGGCGATGGCATTTCC
ATTTTTGGTTCCAATCATATCTGGATTGATCATTGCACTTTGTCTGAATGTACAGATGGC
CTCATTGATGCCATCATGGCTTCCACTGCTATCACCATTTCTAATTGCAAATTCAACTAT
CATAACGACGTGATGCTTTTGGGGGCAACTGATGCCTTTCCTCAAGATGCAATAATGCAA
GTCACAGTTGCATTCAATCGGTTCGGGGAGGGATTGATTCAGAGGATGCCAAGGTGCAGA
TGGGGATTCTTCCATGTTGTCAACAACGACTACACTCATTGGCAAATGTACGCGATTGGT
GGCAGTGCTCATCCAACCATTATCAGTCAGGGTAATCGTTTCAAGGCTTCCGATAATCCT
AATACGAAGCAGGTGACTAAGAGGGATTACGCAACAGAATCCGAGTGGAAGAAGTGGCAA
TGGGTATCAGAGGGCGATTCGTTCTTAAATGGAGCTTATTTTGTAGAGTCAGGGCCACAA
GACAAGAAAAAAACTGCATTGACAAAAAATCATAAGATCAAGTTCAAACCTGGTTCACAT
GCAGGACGACTCACTCGCTTTGCTGGTGTGCTCAAGTGCAAACCTGGCATACCTTGTTAG

Peptide Sequence

PEP ID

Solyc01g010740.3.1
PEP Infomation

Pectate lyase (AHRD V3.3 *** K4ATR7_SOLLC)
Sequence

MAFISGNSILLVLFIWLASLVPHLHARIAEFDPYLEKQALEALNSSLEAYTNNPEEITNA
FNKEVGNALLKYKSLRRHLKEKDKCMATNPIDRCWRCDKNWAENRMDLEECARGFGHKTT
GGKNGKYYVVTDESDDNVQEPKPGTLRHAVIQEEPLWIIFEKSMVIKLRQELMITSDKTI
DGRGVAVHIAYGAGLMIQFVHNVIIHNIRIQNIISTNGGMIRDSINHIGLRTVSDGDGIS
IFGSNHIWIDHCTLSECTDGLIDAIMASTAITISNCKFNYHNDVMLLGATDAFPQDAIMQ
VTVAFNRFGEGLIQRMPRCRWGFFHVVNNDYTHWQMYAIGGSAHPTIISQGNRFKASDNP
NTKQVTKRDYATESEWKKWQWVSEGDSFLNGAYFVESGPQDKKKTALTKNHKIKFKPGSH
AGRLTRFAGVLKCKPGIPC*

Transcript Sequence

Transcript ID

Solyc01g010740.3.1
Transcript Infomation

Pectate lyase (AHRD V3.3 *** K4ATR7_SOLLC)
Sequence

ATGGCCTTTATCAGTGGGAATTCAATTTTGTTAGTATTGTTCATATGGTTAGCTTCATTA
GTCCCACATTTACATGCCAGAATTGCTGAGTTTGATCCATATTTGGAAAAACAAGCTTTG
GAAGCCCTCAACTCTTCACTTGAAGCATATACTAATAATCCTGAGGAAATAACTAATGCA
TTCAACAAAGAAGTTGGAAATGCATTGCTGAAGTATAAAAGCTTAAGGAGGCATCTTAAA
GAAAAAGATAAATGCATGGCAACCAATCCAATTGATAGATGCTGGAGGTGTGACAAAAAT
TGGGCTGAAAACAGGATGGATTTGGAAGAGTGTGCTAGGGGATTTGGCCACAAGACGACC
GGTGGTAAAAATGGCAAGTACTATGTTGTCACCGATGAATCAGATGATAACGTGCAGGAA
CCAAAACCAGGGACCCTTCGTCATGCTGTGATTCAAGAGGAGCCATTGTGGATCATCTTT
GAGAAATCAATGGTGATCAAGTTGCGACAAGAACTTATGATCACGAGTGACAAGACAATC
GATGGCAGGGGAGTCGCTGTTCACATAGCTTATGGTGCTGGATTAATGATCCAATTCGTG
CATAATGTCATAATCCACAACATCAGGATTCAGAATATCATATCTACTAATGGTGGCATG
ATAAGAGATTCTATTAACCATATTGGTCTAAGGACAGTGAGCGATGGCGATGGCATTTCC
ATTTTTGGTTCCAATCATATCTGGATTGATCATTGCACTTTGTCTGAATGTACAGATGGC
CTCATTGATGCCATCATGGCTTCCACTGCTATCACCATTTCTAATTGCAAATTCAACTAT
CATAACGACGTGATGCTTTTGGGGGCAACTGATGCCTTTCCTCAAGATGCAATAATGCAA
GTCACAGTTGCATTCAATCGGTTCGGGGAGGGATTGATTCAGAGGATGCCAAGGTGCAGA
TGGGGATTCTTCCATGTTGTCAACAACGACTACACTCATTGGCAAATGTACGCGATTGGT
GGCAGTGCTCATCCAACCATTATCAGTCAGGGTAATCGTTTCAAGGCTTCCGATAATCCT
AATACGAAGCAGGTGACTAAGAGGGATTACGCAACAGAATCCGAGTGGAAGAAGTGGCAA
TGGGTATCAGAGGGCGATTCGTTCTTAAATGGAGCTTATTTTGTAGAGTCAGGGCCACAA
GACAAGAAAAAAACTGCATTGACAAAAAATCATAAGATCAAGTTCAAACCTGGTTCACAT
GCAGGACGACTCACTCGCTTTGCTGGTGTGCTCAAGTGCAAACCTGGCATACCTTGTTAG
CTAACGATCCTCTTATGTGCATATAATTTGATGCATCAGTAAGAAGGAGATAAGTAGATT
GATGATACTTTGACTGTAGAATAATGGAAAATAGGATAAGAAAGAAATGGTTCCCATAAG
TTATGTTTTGTTTCAGTTTTCTTTCCTTGTGACAGAGTAAGTGTAGGTATTGTGGAAGTA
TGAATCAATTCTCGTGAAAAGAAAAAGAAGATGTAATTACATTGATTTCTAGGAATTTGA
GTTCTCTGTTGGTATTCAGTGTAGTCTGTATGTTCACAAGAGTGATATTTTTTTATTGTT
GTTACAGAATGTATATACAACTCTTTCTTTATATTGTATAAAGATATAGGCAGATAACAT
ATCTT