Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g009380.3.1
CDS Infomation

Nicalin (AHRD V3.3 *** A0A166DJQ4_DAUCA)
Sequence

ATGAAAAAAAAAATAATTCATCAATTAAATTTTGCAGATTCAAATCCAACATTTATATTT
CTGCAAAACCCTATCAACACAATCAGTTCATCAATGGCGAATTCTCTTAGAAGAAAATCG
GCTGTATTAGACTCGATGTATTACCCTATCATCGGTTTACTCATCGTACTTATCGCCTGT
GTTGAATTCTCCGACGCCGTTACCGCCGTTGATGTTTACCGGCTTGTTCAGTATGATATC
GCCGGCGTGCCTTTCGGTTCTCGGCTTGCTACTTTTAATCATCACGCCGGCTCATCATTT
TTTGGTTCTGGTTCTAGTTCTGATCTTTCCCGTACGGTTCTCATTCTTCCAGTTCGTGAA
TTGAACCTCACTCTCATTACAGAATATATTGAACAGAAAAAGCTATTAGGGGGTTTGCTG
CTTTTACTCCCTCCAAAATTTAGACCAGAGAACACAGGCAGCACATTTGGTGCTGATGAG
GATATTGACAGCTTGAGGAACAAATTGGTAGAGTTGGAATGGCTGCTTACACATTCCAAT
ATTCCTTATCCTGTATATTTTGCTTTCGAGGATGATAATATCAATGCTGTATTAGCTGAA
GTTAAGAGAAATGATGCTAGTGGTCAACCTGCAACAGCTACTACAGGCGGCTACAAGCTT
GTTGTTGCTGCCTCAGATCCCAAGAGAATTGCGCCCCCAAACATTGCAAATATTCAGGGA
TGGTTACCAGGGCTTAAAGTTGATGGAGACTCGGATCAGCTACCAACTATTGCCATAGTG
GCTTCATATGACACGTTTGGGGCTGCTCCGGCATTGTCAGTGGGAAGTGACAGCAATGGA
AGTGGTGTAGTGGCACTTCTTGAAATAGCTAGATTGTTTTCTGCTCTGTATTCAAATCCT
AAAACTAGAGGTAGATATAACTTACTCTTTGGATTGACATCTGGTGGCCCGTATAACTAC
AATGGAACTCAAAAGTGGCTTCGGAGTTTTGACCAACGTCTACGTGAGAGTATAGACTAT
GCCATCTGCTTGAATAGTGTTGGGTCCCTAGGTAACCAGTCACATCTTCATGTTTCTAAA
CCTCCAGAAAATGCCTACATACAGCAGATATTTCAGGGTTTCTCTACTGTAGCAGAAGAA
TTGGGGCTTCAAGTTCGTCTTAAGCACAAGAAAATAAATATCTCGAATCCTCGAGTAGCT
TGGGAGCATGAACAGTTTTCAAGGTTGAGAGTCACTGCAGCTACACTTTCTGAACTTTCT
ACTGCACCTGAATTACTGGAAAGCACGGGAGGTCTGACTGATAACAGGCATTTTACCTGT
GAAGCCTCAATCATTCAAAGAATCAAGCTTGTTGCTGAAAGTCTAGCAAGACACATTTAC
AGCCAGGAGAAGAAAAGCATAAGCATATTTGCAGACGATAGTAGCCTAGCTGTCAATCCT
TCCTACATAAGGTCTTGGCTAGATCTCTTATCCACAACACCTCGAGTGGCACCTTTTCTT
TCAAAAAATGACCCGCTTATTAAGGCGCTGGAGAAGGAACTAGCTGATCATACTGCAGAG
GTGAATGTACAGCATGAGTCTCTAGATGGAACATTCACTTTTTACGATTCAACTAGTGGG
AAGTTGCATATATATCAGGTTGCCAGCGTGACATTTGACTTACTTTTGCTGTTGGTTCTA
GGATCATACTTGATTACACTTTTCAGTTTTCTTTTTATCACCACGAGGGGTCTTGACGAT
CTTATTAGTCTATTCCGTCGTCCCTCATCACGGAAAGTAAAAACCACTTGA

Peptide Sequence

PEP ID

Solyc01g009380.3.1
PEP Infomation

Nicalin (AHRD V3.3 *** A0A166DJQ4_DAUCA)
Sequence

MKKKIIHQLNFADSNPTFIFLQNPINTISSSMANSLRRKSAVLDSMYYPIIGLLIVLIAC
VEFSDAVTAVDVYRLVQYDIAGVPFGSRLATFNHHAGSSFFGSGSSSDLSRTVLILPVRE
LNLTLITEYIEQKKLLGGLLLLLPPKFRPENTGSTFGADEDIDSLRNKLVELEWLLTHSN
IPYPVYFAFEDDNINAVLAEVKRNDASGQPATATTGGYKLVVAASDPKRIAPPNIANIQG
WLPGLKVDGDSDQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIARLFSALYSNP
KTRGRYNLLFGLTSGGPYNYNGTQKWLRSFDQRLRESIDYAICLNSVGSLGNQSHLHVSK
PPENAYIQQIFQGFSTVAEELGLQVRLKHKKINISNPRVAWEHEQFSRLRVTAATLSELS
TAPELLESTGGLTDNRHFTCEASIIQRIKLVAESLARHIYSQEKKSISIFADDSSLAVNP
SYIRSWLDLLSTTPRVAPFLSKNDPLIKALEKELADHTAEVNVQHESLDGTFTFYDSTSG
KLHIYQVASVTFDLLLLLVLGSYLITLFSFLFITTRGLDDLISLFRRPSSRKVKTT*

Transcript Sequence

Transcript ID

Solyc01g009380.3.1
Transcript Infomation

Nicalin (AHRD V3.3 *** A0A166DJQ4_DAUCA)
Sequence

TTTATATATTTTCTATTTTTACTTTAATTATGCCTCAATAAATCAAACTTTAATTAATTC
GAAAACATGAACACATTAATGCAAAAATTTCACTTCAAACTTTTATTTATACCTCACCAA
AATATTTAATACTCTACATTTATATTTTTCACCTTCAAAATATATTTTAAAATCAATTCA
TCAATCAAATTGATGAAAAAAAAAATAATTCATCAATTAAATTTTGCAGATTCAAATCCA
ACATTTATATTTCTGCAAAACCCTATCAACACAATCAGTTCATCAATGGCGAATTCTCTT
AGAAGAAAATCGGCTGTATTAGACTCGATGTATTACCCTATCATCGGTTTACTCATCGTA
CTTATCGCCTGTGTTGAATTCTCCGACGCCGTTACCGCCGTTGATGTTTACCGGCTTGTT
CAGTATGATATCGCCGGCGTGCCTTTCGGTTCTCGGCTTGCTACTTTTAATCATCACGCC
GGCTCATCATTTTTTGGTTCTGGTTCTAGTTCTGATCTTTCCCGTACGGTTCTCATTCTT
CCAGTTCGTGAATTGAACCTCACTCTCATTACAGAATATATTGAACAGAAAAAGCTATTA
GGGGGTTTGCTGCTTTTACTCCCTCCAAAATTTAGACCAGAGAACACAGGCAGCACATTT
GGTGCTGATGAGGATATTGACAGCTTGAGGAACAAATTGGTAGAGTTGGAATGGCTGCTT
ACACATTCCAATATTCCTTATCCTGTATATTTTGCTTTCGAGGATGATAATATCAATGCT
GTATTAGCTGAAGTTAAGAGAAATGATGCTAGTGGTCAACCTGCAACAGCTACTACAGGC
GGCTACAAGCTTGTTGTTGCTGCCTCAGATCCCAAGAGAATTGCGCCCCCAAACATTGCA
AATATTCAGGGATGGTTACCAGGGCTTAAAGTTGATGGAGACTCGGATCAGCTACCAACT
ATTGCCATAGTGGCTTCATATGACACGTTTGGGGCTGCTCCGGCATTGTCAGTGGGAAGT
GACAGCAATGGAAGTGGTGTAGTGGCACTTCTTGAAATAGCTAGATTGTTTTCTGCTCTG
TATTCAAATCCTAAAACTAGAGGTAGATATAACTTACTCTTTGGATTGACATCTGGTGGC
CCGTATAACTACAATGGAACTCAAAAGTGGCTTCGGAGTTTTGACCAACGTCTACGTGAG
AGTATAGACTATGCCATCTGCTTGAATAGTGTTGGGTCCCTAGGTAACCAGTCACATCTT
CATGTTTCTAAACCTCCAGAAAATGCCTACATACAGCAGATATTTCAGGGTTTCTCTACT
GTAGCAGAAGAATTGGGGCTTCAAGTTCGTCTTAAGCACAAGAAAATAAATATCTCGAAT
CCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGTTGAGAGTCACTGCAGCTACACTT
TCTGAACTTTCTACTGCACCTGAATTACTGGAAAGCACGGGAGGTCTGACTGATAACAGG
CATTTTACCTGTGAAGCCTCAATCATTCAAAGAATCAAGCTTGTTGCTGAAAGTCTAGCA
AGACACATTTACAGCCAGGAGAAGAAAAGCATAAGCATATTTGCAGACGATAGTAGCCTA
GCTGTCAATCCTTCCTACATAAGGTCTTGGCTAGATCTCTTATCCACAACACCTCGAGTG
GCACCTTTTCTTTCAAAAAATGACCCGCTTATTAAGGCGCTGGAGAAGGAACTAGCTGAT
CATACTGCAGAGGTGAATGTACAGCATGAGTCTCTAGATGGAACATTCACTTTTTACGAT
TCAACTAGTGGGAAGTTGCATATATATCAGGTTGCCAGCGTGACATTTGACTTACTTTTG
CTGTTGGTTCTAGGATCATACTTGATTACACTTTTCAGTTTTCTTTTTATCACCACGAGG
GGTCTTGACGATCTTATTAGTCTATTCCGTCGTCCCTCATCACGGAAAGTAAAAACCACT
TGATTCCTGAAGTCGGAAGACGTTTCTGCATCTTGTGAATCAAGAAGTAAGCATTACTTT
TTGTGACTTTAAGGACGCTCATCTTTAGCCAAGTTATCATTATTGGTTCAATGTGTGTTG
GTGTAAACGTTTAAGTTCCACATATTTTGCCTCCGTAGCTATATCATCGTCATTTTCTCT
ACTGAGATACAAAAAATCATTCCCGTAGCTGGTTTTTTTTTCTCGTAAAATTACGAGTTA
TAAACATGTAAACCAGCTGACGTAGAGCGTCAATTTTGGTAGATTTGAATGTATTTATGT
TCTGAAAAAATGTAGGGGTTCTGTTTTGTTGAAGAATCTATTCAAAAACCAGCAAGTTCA
CATGCATGATAAAAACAAAATATAAGATCACATGCATTGGGTAAAACAAGTTTATTTCAC
AAGTTGAAAAGTTGAATTCACAAGATATTAGAATTCTTTTTATTGTTTAACGTAAG