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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g008930.4.1
CDS Infomation

AUREA phytochromobilin synthase
Sequence

ATGGAGTGTTTTTCTTCACTAGGGTGGTTTTGTATATCTAACCCTTCTTTTATTGGACTG
AAAAGTAAGAAGAAGTATAGTTTGAGTAGAAAATGTAGAAGCTTTAACGAAGTTGGGAGT
AAGTGTGTGAGTATGAGCTATACAGAAAATGAAAGCTCTGGTGTTTCTTACAAGAAGTTG
ATTCATTTTGCTTTAGAAGAAACAAATACACATACCCTTTTGTCCCCTTCTCCATTGCAG
GAGAAATACAGTTCTTTGTTGTCCATGGATGACAAAACGGAGCTACAGATGCTTTCTTTT
GAAGCCCATAAAATTCGACTCCTTCGCAGTCTATGTATTGAAGGGAGCGACGGCATGCAG
GTATTGGATTTTGCTGCATTCCCGAAACCGGAATTTGATCTGCCTATCTTCTGTGCCAAC
TTTTTCACTACTGCTAAGATGAACATAATTGTACTGGACCTCAACCCATTGCACGACATC
ATGGATCAAGAAGATTACAAGGAGAAGTACTATAAAGACTTGATTACTCTAGGCCTCAAG
TATTCTAAGCTTTTACCCTGGGGAGGGAAGCTCACCAGCGAATCTCTGAGATTTTTTTCA
CCAATAGTCATATGGACAAGATTCTCATCTAGTCCACACAACCATTCAGTTTTGTTTTCT
GCTTTCAAGGATTATTACCAGGCATGGCTTGGGCTAATGGACAGATCAGAAGGGGAGACG
GACGCTTCTCAAATCGCTTGCAATTGCGAAGCTCAGCATAGATATTTGACATGGAGATCA
GAAAAGGATCCAGGACATGGAGTTTTGAAAAGACTGATAGGGGAAGATCTTGCCAAGGAT
GTCATTACGAAATTTCTATTCAATGGTGTTAATGAACTTGGGAACAAAACATTTCTTGAT
TACTTTCCAGAGTACAGATGTGAAGATGGTAAAGTAAACGAAAAGCGCAGTATGATTGGC
AAATCATTCGAAAATCGACCATGGAATGCAAGAGGAGAATTCATAGGCGATAGAGTTGAG
ATTGTCTGA

Peptide Sequence

PEP ID

Solyc01g008930.4.1
PEP Infomation

AUREA phytochromobilin synthase
Sequence

MECFSSLGWFCISNPSFIGLKSKKKYSLSRKCRSFNEVGSKCVSMSYTENESSGVSYKKL
IHFALEETNTHTLLSPSPLQEKYSSLLSMDDKTELQMLSFEAHKIRLLRSLCIEGSDGMQ
VLDFAAFPKPEFDLPIFCANFFTTAKMNIIVLDLNPLHDIMDQEDYKEKYYKDLITLGLK
YSKLLPWGGKLTSESLRFFSPIVIWTRFSSSPHNHSVLFSAFKDYYQAWLGLMDRSEGET
DASQIACNCEAQHRYLTWRSEKDPGHGVLKRLIGEDLAKDVITKFLFNGVNELGNKTFLD
YFPEYRCEDGKVNEKRSMIGKSFENRPWNARGEFIGDRVEIV*

Transcript Sequence

Transcript ID

Solyc01g008930.4.1
Transcript Infomation

AUREA phytochromobilin synthase
Sequence

TAGCAATGTTATTTTTATTCAATACTTTATAGTAAAACTAAATCATCAAGAAGAGAAATA
TCATTGAAAACTGAGCTGAAAATTGAGTTTTTTTTTAAAAAAAACAAAGAAAAAATGGAG
CTTTGAAACACTTAAAGATTGTAACTTTTTTTGGTTCAATGGAGTGTTTTTCTTCACTAG
GGTGGTTTTGTATATCTAACCCTTCTTTTATTGGACTGAAAAGTAAGAAGAAGTATAGTT
TGAGTAGAAAATGTAGAAGCTTTAACGAAGTTGGGAGTAAGTGTGTGAGTATGAGCTATA
CAGAAAATGAAAGCTCTGGTGTTTCTTACAAGAAGTTGATTCATTTTGCTTTAGAAGAAA
CAAATACACATACCCTTTTGTCCCCTTCTCCATTGCAGGAGAAATACAGTTCTTTGTTGT
CCATGGATGACAAAACGGAGCTACAGATGCTTTCTTTTGAAGCCCATAAAATTCGACTCC
TTCGCAGTCTATGTATTGAAGGGAGCGACGGCATGCAGGTATTGGATTTTGCTGCATTCC
CGAAACCGGAATTTGATCTGCCTATCTTCTGTGCCAACTTTTTCACTACTGCTAAGATGA
ACATAATTGTACTGGACCTCAACCCATTGCACGACATCATGGATCAAGAAGATTACAAGG
AGAAGTACTATAAAGACTTGATTACTCTAGGCCTCAAGTATTCTAAGCTTTTACCCTGGG
GAGGGAAGCTCACCAGCGAATCTCTGAGATTTTTTTCACCAATAGTCATATGGACAAGAT
TCTCATCTAGTCCACACAACCATTCAGTTTTGTTTTCTGCTTTCAAGGATTATTACCAGG
CATGGCTTGGGCTAATGGACAGATCAGAAGGGGAGACGGACGCTTCTCAAATCGCTTGCA
ATTGCGAAGCTCAGCATAGATATTTGACATGGAGATCAGAAAAGGATCCAGGACATGGAG
TTTTGAAAAGACTGATAGGGGAAGATCTTGCCAAGGATGTCATTACGAAATTTCTATTCA
ATGGTGTTAATGAACTTGGGAACAAAACATTTCTTGATTACTTTCCAGAGTACAGATGTG
AAGATGGTAAAGTAAACGAAAAGCGCAGTATGATTGGCAAATCATTCGAAAATCGACCAT
GGAATGCAAGAGGAGAATTCATAGGCGATAGAGTTGAGATTGTCTGATGTAATATCTACC
TCGTCTCTGTTAATTAGCCGATCCCAACTCGTTTGGGATTGAGTAGTAGTAGCTGCTGTT
GTTTTAGTTTATTGTAGTAGTCGTAACCGTCTCTGTCAATGTCAATCTTTTGACAGTTTG
ATGCAGGAGAAGAATTCATAGGTGATAGTGTTGAATCAATAACGAAAGTGGGGTCTGGGG
AGAGTGTTGTGTACGTAGAGTAGCAGTCTCGCGGACCGTACCCTACCTTGTGAAGGTAGA
GAGACTGTTTCGGATACCGAATGTAATCTGTTGTAACTTTCACATGTTCTCTTTATTCTT
GTTTATTCAATCTCAGTCAATGTAAATAGTTCATCACA