Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g008480.3.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YH67_CYNCS)
Sequence

ATGTTTGCTACTTGTGGTGCTCATCGATTCTCCAAAAAGCTTCAGCCTTTTCAGGGGTTT
CCTCTCAAGAGCTGTTGTTGGTTTAGCAGAACTATAATTAACCATGTACGTTCCTTTACG
CAATCCAAACAAAGGAGACCTGTACAACGAGTTAATAGATTGCCGAGCAAGTCTACCAAA
TCTGTTCCGAAGCAAGACATAGATCTCCCTAAAGTTTTCATGAGGGATACAGTAACAAGA
ATATCACATATGCTGAGATTTTCAACTTGGGATTCTGCTCAAGAGCAGTTGATGGAACTT
CCCATAAAATGGGATTCCTACACAGTTAATCAAGTTCTCAAGACCCATCCTCCTATGGAG
AAAGCCTGGTTGTTTTTCAGTTGGGCCTCTAAGTTGAAAGGCTTTAAGCATGACCAGTTT
ACCTACACGACTATGTTGGATATATTTGGGGAAGCTGGGAGGATTTCATCCATGAACTAT
ATCTTTCAGCAGATGCAAGACAAAGAAATCAAGATAGATGCAGTGACGTATACATCCCTT
CTTCACTGGCTTTCCGACCATGGGGACATTAATGAGTCAATTAAATTATGGCAGGATATG
AAAGATAAAGGATGTGCTCCTAATGTTGTTTGCTACACTGCATACATGAAAGGTTTATTT
GATCATAATCGAGTTAAGGAAGGAGCCAAGATATACAAGGAGATGCTTCAATCTGGTTGT
TCTCCCAACTGCCACACATACACTGTCCTTATGGAGCATCTTGCTAAATCTGGAAAATTT
GATGGAGTTCTCGAGATTTTCAGTAAAATGCAAGATGCAGGGGTCCAACCAGATAAAGCT
ACATGCAACATCTTAGTGGGAAAATGCTGCAAAGCTGGGGAAACACAGGCAATGATGAAA
ATTCTTCACTACATGAAGGAGAATTTTCTTGTTCTGCGTTATTCTGTCTATCAAGAGGCT
TTCCAGACGTTGAAGATGGCTGGGGTGAGTGATCGGCTGCTTAGGGATGTTAACCGTCAT
TTGTCCTTACAAAATTTCAACCAAGATCAGATTGACGAATCTGATGGAATTGCTGAAAGT
AGTTGCTTTACTTTGGATGATAGGATGGTTTTGTACTTATTGAATAAAAAAAGTCTTCTT
GCTGTTGATTACCTACTAGATGGCTTGATGAATAAGCGTCTCAAATTGTATCCTGGAATA
GTTTCAACTGTAGTTGAGGTAAACTGTAGCTGTGGTAGAGTAAATGGCGCCTTTTTGGCC
TTCAAAGTCAGTATGAAATTGGGCATAACCATTGACAGAATTACGTACCTCACCATGGTT
GGAGAACTTATTAGAGCAAATTCCTTTTCAAGGGTTGTGGACATTGTTGAAGTAATGGTT
GGGGCAGGCCTGTCATTAGGGTCAGAATTAACTGCTCTTCTGATTCATCGGCTTGGCTGC
GCTAGAGCGCCTGCTTCTGCTGAAAAGTTATTTAGCATCTTACCTGATCAGCAGAAGAGT
ATTGCTGTATATACTGCTCTAATAAACACCTACTTCACCTTTGGGAATGCTGATAAAGGG
CTTGAAATATTCGAGACCATGAGAAAGCAAGGGATAAATCTGGCATTAATTGAGATGCTA
GATATGGGTATCTGGAAACTTTTCATGATTGTGGAGTATTTGGAGTACAAATTAGTTGTT
GAAATGGGGTTTGCTTTGTATGGAATCCCGCATACTGAAACAGAATGCGGGATAGGTAAT
CTCGTATGGATCATATTAAAACGTTCTCTCTTTGACAAGTTCAGCTTATCTTTAGAAGCT
GTAGCAGCTGGAATGATTGGTCAAATGGGGCTTGACAGCTCGATTATTCTCCTGCAACAT
TATGGCCTTAAAGAAGAAACACGGGTAGAGTATTTCAGGGGAAAAGATTTTGTCGCTTTT
GTGAGAAATCATTCAGAACTTAAAGACATACTAGAGTCAGATAAAGGTTTGGAGCCTGAA
GATATTGCCAAAACGCTGCTTCAAAGAATCTTTAGTCCGCTGTGA

Peptide Sequence

PEP ID

Solyc01g008480.3.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YH67_CYNCS)
Sequence

MFATCGAHRFSKKLQPFQGFPLKSCCWFSRTIINHVRSFTQSKQRRPVQRVNRLPSKSTK
SVPKQDIDLPKVFMRDTVTRISHMLRFSTWDSAQEQLMELPIKWDSYTVNQVLKTHPPME
KAWLFFSWASKLKGFKHDQFTYTTMLDIFGEAGRISSMNYIFQQMQDKEIKIDAVTYTSL
LHWLSDHGDINESIKLWQDMKDKGCAPNVVCYTAYMKGLFDHNRVKEGAKIYKEMLQSGC
SPNCHTYTVLMEHLAKSGKFDGVLEIFSKMQDAGVQPDKATCNILVGKCCKAGETQAMMK
ILHYMKENFLVLRYSVYQEAFQTLKMAGVSDRLLRDVNRHLSLQNFNQDQIDESDGIAES
SCFTLDDRMVLYLLNKKSLLAVDYLLDGLMNKRLKLYPGIVSTVVEVNCSCGRVNGAFLA
FKVSMKLGITIDRITYLTMVGELIRANSFSRVVDIVEVMVGAGLSLGSELTALLIHRLGC
ARAPASAEKLFSILPDQQKSIAVYTALINTYFTFGNADKGLEIFETMRKQGINLALIEML
DMGIWKLFMIVEYLEYKLVVEMGFALYGIPHTETECGIGNLVWIILKRSLFDKFSLSLEA
VAAGMIGQMGLDSSIILLQHYGLKEETRVEYFRGKDFVAFVRNHSELKDILESDKGLEPE
DIAKTLLQRIFSPL*

Transcript Sequence

Transcript ID

Solyc01g008480.3.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YH67_CYNCS)
Sequence

TTACTCTCTAATACGGAAAGCAAATTATAACCCAAAAGGAAAAAAAGAGTTTCCGGCCGA
TAGTCCCTTTTATCAGTGTAGGAGTTCCGGCGTATATACAGTCCCTCTATAGCTCTCTCC
GATGAGATGGAATCATATGAATCAAAGCAGTCCTCAAGTTGCAGGTTAGAATGCTTTAGT
TGAACTTGTAGTCTGGAGTCACATGAGTCGAAACACTACCTCAAGTCACCAACTGGACCA
GAACTATGTTTGCTACTTGTGGTGCTCATCGATTCTCCAAAAAGCTTCAGCCTTTTCAGG
GGTTTCCTCTCAAGAGCTGTTGTTGGTTTAGCAGAACTATAATTAACCATGTACGTTCCT
TTACGCAATCCAAACAAAGGAGACCTGTACAACGAGTTAATAGATTGCCGAGCAAGTCTA
CCAAATCTGTTCCGAAGCAAGACATAGATCTCCCTAAAGTTTTCATGAGGGATACAGTAA
CAAGAATATCACATATGCTGAGATTTTCAACTTGGGATTCTGCTCAAGAGCAGTTGATGG
AACTTCCCATAAAATGGGATTCCTACACAGTTAATCAAGTTCTCAAGACCCATCCTCCTA
TGGAGAAAGCCTGGTTGTTTTTCAGTTGGGCCTCTAAGTTGAAAGGCTTTAAGCATGACC
AGTTTACCTACACGACTATGTTGGATATATTTGGGGAAGCTGGGAGGATTTCATCCATGA
ACTATATCTTTCAGCAGATGCAAGACAAAGAAATCAAGATAGATGCAGTGACGTATACAT
CCCTTCTTCACTGGCTTTCCGACCATGGGGACATTAATGAGTCAATTAAATTATGGCAGG
ATATGAAAGATAAAGGATGTGCTCCTAATGTTGTTTGCTACACTGCATACATGAAAGGTT
TATTTGATCATAATCGAGTTAAGGAAGGAGCCAAGATATACAAGGAGATGCTTCAATCTG
GTTGTTCTCCCAACTGCCACACATACACTGTCCTTATGGAGCATCTTGCTAAATCTGGAA
AATTTGATGGAGTTCTCGAGATTTTCAGTAAAATGCAAGATGCAGGGGTCCAACCAGATA
AAGCTACATGCAACATCTTAGTGGGAAAATGCTGCAAAGCTGGGGAAACACAGGCAATGA
TGAAAATTCTTCACTACATGAAGGAGAATTTTCTTGTTCTGCGTTATTCTGTCTATCAAG
AGGCTTTCCAGACGTTGAAGATGGCTGGGGTGAGTGATCGGCTGCTTAGGGATGTTAACC
GTCATTTGTCCTTACAAAATTTCAACCAAGATCAGATTGACGAATCTGATGGAATTGCTG
AAAGTAGTTGCTTTACTTTGGATGATAGGATGGTTTTGTACTTATTGAATAAAAAAAGTC
TTCTTGCTGTTGATTACCTACTAGATGGCTTGATGAATAAGCGTCTCAAATTGTATCCTG
GAATAGTTTCAACTGTAGTTGAGGTAAACTGTAGCTGTGGTAGAGTAAATGGCGCCTTTT
TGGCCTTCAAAGTCAGTATGAAATTGGGCATAACCATTGACAGAATTACGTACCTCACCA
TGGTTGGAGAACTTATTAGAGCAAATTCCTTTTCAAGGGTTGTGGACATTGTTGAAGTAA
TGGTTGGGGCAGGCCTGTCATTAGGGTCAGAATTAACTGCTCTTCTGATTCATCGGCTTG
GCTGCGCTAGAGCGCCTGCTTCTGCTGAAAAGTTATTTAGCATCTTACCTGATCAGCAGA
AGAGTATTGCTGTATATACTGCTCTAATAAACACCTACTTCACCTTTGGGAATGCTGATA
AAGGGCTTGAAATATTCGAGACCATGAGAAAGCAAGGGATAAATCTGGCATTAATTGAGA
TGCTAGATATGGGTATCTGGAAACTTTTCATGATTGTGGAGTATTTGGAGTACAAATTAG
TTGTTGAAATGGGGTTTGCTTTGTATGGAATCCCGCATACTGAAACAGAATGCGGGATAG
GTAATCTCGTATGGATCATATTAAAACGTTCTCTCTTTGACAAGTTCAGCTTATCTTTAG
AAGCTGTAGCAGCTGGAATGATTGGTCAAATGGGGCTTGACAGCTCGATTATTCTCCTGC
AACATTATGGCCTTAAAGAAGAAACACGGGTAGAGTATTTCAGGGGAAAAGATTTTGTCG
CTTTTGTGAGAAATCATTCAGAACTTAAAGACATACTAGAGTCAGATAAAGGTTTGGAGC
CTGAAGATATTGCCAAAACGCTGCTTCAAAGAATCTTTAGTCCGCTGTGA