Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g007050.2.1
CDS Infomation

U-box domain-containing family protein (AHRD V3.3 *** B9IIL0_POPTR)
Sequence

ATGGAAAATGTTGAAATTCCTGAGTATTTTATATGTCCAATTTCTCTACAAATCATGAAA
GATCCTGTAACGGTCGTTACTGGTATTACGTATGATCGCGATAGTATCGAATGTTGGCTT
TCCAAAAACCCTAATAGTAACGCCCTTTGTCCGGTCACGAAGCTACACGTGTCACGAGAT
TCAGACCTAACACCAAACCACACTCTCCGTCACTTGATTCAATCGTGGTGTGTATCGAAT
GGATTCAACGTTTTTGATCAAGTCTCGACTCCGGCTAAGCCTCCGTTAAGCAAATGCTAC
GTCCTCAACCTCGTTCTTGATCTCTCCGTCCCCGGGACGGAGAATATCAAGACGTTAGAG
AAGTTGGAGATGTTAGCTAAGGAGAATAATGAGAGAAACAAGACATACATGGTTGAAGTT
GGAGTTCATGAAGCCCTAGTTAACTTCTTGATCCGATGTTACATGAAATGTGACACTAAT
GGCCTTGAAAAAGCCCTTAGTACACTTTCATTAATTTGGGATTATTTTCCATCTTGTCAT
GAAAATAATGAAGTCGAAAATCGCGAAGAGATATTAATAGATTCAATCACATGGGCGTTA
GGTCTTGATCGCAACATGCAAAACCATGCAACGATCAAGAACCACGCGATGAGCCTTTTG
AGATCCATCATTGGGAAGGCGAATTCAAGCACATTGGATAGACTAAAACCCCAATTATTG
GAGAAAATAATTAGGGTTTTACGCGAGAGTGGTAGTAATACTACCACCATCGCACAAAAA
GTAGTTGACAACGCTTTACATGTCATCCTAAACACTAGTCATTCGGGCAAGAACCGGAAC
ATTATGGTTCAATCAAGGGCAATTTTCGAGCTCATCGAGCTCGAAATCAATTTTTCATCA
AATAAAAAGACTAAAGAGCTAATATTTGAGATATTATTCAATTTATGCTCTTGTGCTGAT
GGTAGGGCACAACTTTTAAGTCATGCTGCTGGAATTGCTATGATTACAAAGAGGATTTTA
AAGGTTTCTCCAATTGTAGATGAAAAGGCCATAATGATTCTTTATTTGATTACAAAATAT
TCAGCAACAAGTGGAGTTCTTCAAGAAATGTTGAAAGTCAAAAGTGTATCAAAGATTTGT
ACTGTGATACAAGCTAATTGTGCTTCACATGTAAAGGATAAAGCAAGGGAAATATTAAGA
AATCATTTTGATTTTTGGAAGAATTCACCTTGTGTTGAAGTTGCCACCTTAACAAGGCTT
CATTAA

Peptide Sequence

PEP ID

Solyc01g007050.2.1
PEP Infomation

U-box domain-containing family protein (AHRD V3.3 *** B9IIL0_POPTR)
Sequence

MENVEIPEYFICPISLQIMKDPVTVVTGITYDRDSIECWLSKNPNSNALCPVTKLHVSRD
SDLTPNHTLRHLIQSWCVSNGFNVFDQVSTPAKPPLSKCYVLNLVLDLSVPGTENIKTLE
KLEMLAKENNERNKTYMVEVGVHEALVNFLIRCYMKCDTNGLEKALSTLSLIWDYFPSCH
ENNEVENREEILIDSITWALGLDRNMQNHATIKNHAMSLLRSIIGKANSSTLDRLKPQLL
EKIIRVLRESGSNTTTIAQKVVDNALHVILNTSHSGKNRNIMVQSRAIFELIELEINFSS
NKKTKELIFEILFNLCSCADGRAQLLSHAAGIAMITKRILKVSPIVDEKAIMILYLITKY
SATSGVLQEMLKVKSVSKICTVIQANCASHVKDKAREILRNHFDFWKNSPCVEVATLTRL
H*

Transcript Sequence

Transcript ID

Solyc01g007050.2.1
Transcript Infomation

U-box domain-containing family protein (AHRD V3.3 *** B9IIL0_POPTR)
Sequence

ATGGAAAATGTTGAAATTCCTGAGTATTTTATATGTCCAATTTCTCTACAAATCATGAAA
GATCCTGTAACGGTCGTTACTGGTATTACGTATGATCGCGATAGTATCGAATGTTGGCTT
TCCAAAAACCCTAATAGTAACGCCCTTTGTCCGGTCACGAAGCTACACGTGTCACGAGAT
TCAGACCTAACACCAAACCACACTCTCCGTCACTTGATTCAATCGTGGTGTGTATCGAAT
GGATTCAACGTTTTTGATCAAGTCTCGACTCCGGCTAAGCCTCCGTTAAGCAAATGCTAC
GTCCTCAACCTCGTTCTTGATCTCTCCGTCCCCGGGACGGAGAATATCAAGACGTTAGAG
AAGTTGGAGATGTTAGCTAAGGAGAATAATGAGAGAAACAAGACATACATGGTTGAAGTT
GGAGTTCATGAAGCCCTAGTTAACTTCTTGATCCGATGTTACATGAAATGTGACACTAAT
GGCCTTGAAAAAGCCCTTAGTACACTTTCATTAATTTGGGATTATTTTCCATCTTGTCAT
GAAAATAATGAAGTCGAAAATCGCGAAGAGATATTAATAGATTCAATCACATGGGCGTTA
GGTCTTGATCGCAACATGCAAAACCATGCAACGATCAAGAACCACGCGATGAGCCTTTTG
AGATCCATCATTGGGAAGGCGAATTCAAGCACATTGGATAGACTAAAACCCCAATTATTG
GAGAAAATAATTAGGGTTTTACGCGAGAGTGGTAGTAATACTACCACCATCGCACAAAAA
GTAGTTGACAACGCTTTACATGTCATCCTAAACACTAGTCATTCGGGCAAGAACCGGAAC
ATTATGGTTCAATCAAGGGCAATTTTCGAGCTCATCGAGCTCGAAATCAATTTTTCATCA
AATAAAAAGACTAAAGAGCTAATATTTGAGATATTATTCAATTTATGCTCTTGTGCTGAT
GGTAGGGCACAACTTTTAAGTCATGCTGCTGGAATTGCTATGATTACAAAGAGGATTTTA
AAGGTTTCTCCAATTGTAGATGAAAAGGCCATAATGATTCTTTATTTGATTACAAAATAT
TCAGCAACAAGTGGAGTTCTTCAAGAAATGTTGAAAGTCAAAAGTGTATCAAAGATTTGT
ACTGTGATACAAGCTAATTGTGCTTCACATGTAAAGGATAAAGCAAGGGAAATATTAAGA
AATCATTTTGATTTTTGGAAGAATTCACCTTGTGTTGAAGTTGCCACCTTAACAAGGCTT
CATTAATCGGTCCCGTATTGGAAAATCCCATTTTGGGTAATTGTTACAAAGATCCTATAT
TATTTTGGTTTTTCATTTGGTGTCGAGATATCTGATTTTGATTCGAGTGACGAAATCACT
CTTTAACTGATATTATTATAAGAATTTTTAAG