Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g006730.3.1
CDS Infomation

Calcium-dependent protein kinase (AHRD V3.3 *** H6UM43_TOBAC)
Sequence

ATGGGGAATACATGTATAGGACCCAAATTGGGTAACAATGGGTTCTTGCAATCAGTAACA
GCAGCTGTTTGGAAAACAAGACAACAACAACATTTACCTCTTGCAAATAAAGGGGACTCA
AATTCCCATAAAACTCAAGAACATTCATCGGTTGGTTCGTCGTTGAATGTAGATGGAAAT
GATGCTAATAGATTTGGTGGTACTCAGAGTACTCCACCCCCACACCTTAAGATTAGTGGA
AATGATACTAATGAGAAGAACTCGTCGCCAAACGTTAGTAATAAGCCAGTGGAAGGAGTG
AAACAGAATAAACCTAGTCATGTTAAGCGAGTATCGAGCATTGGGCTTAAAATCGACTCT
GTTTTGGGAAGAAAAACTGGTAATTTGAAGGAGATTTATAGTTTAGGGAGGAAGCTTGGA
CAAGGTCAATTCGGGACTACGTATTTATGTGTGGATAAGGTACATGGAAGGGAAATGGCG
TGTAAGTCCATTGCTAAAAGGAAGTTGAATACCGAGGAGGATGTGGAGGATGTAAGAAGG
GAGATTCAGATTATGCACCATTTGGCAGGGCATCCTAGTGTGGTACAAATAGTAGGGGCT
TATGAGGATGCTGTTGAAGTACATGTCGTGATGGAGCTTTGTGCAGGTGGGGAGCTTTTC
GACAGGATTTTACAGAGAGGACATTACAGTGAGAAGAAGGCAGCTGAACTCGCTAGGGTA
ATTGTAGGTGTCGTGGAAGCATGTCATTCCATGGGTGTCATGCATAGGGACCTCAAACCC
GAAAACTTTCTTTTTATCAACCAGGATGAAGATTCGCACTTGAAGACAATCGACTTTGGG
TTATCGGTATTCTTCAAGCCAGGTGAAATCTTCACTGATGTTGTCGGAAGCCCTTATTAT
GTTGCTCCGGAAGTGTTGCGTAAGCATTATGGTTCAGAATGTGATATATGGAGTGCTGGA
GTGATCATTTACATTTTACTAAGTGGAGTTCCCCCCTTTTGGGAAGAGACGGAGCAAGGA
ATATTTGAACAGGTTTTAAGAGGGGAACTTGACTTTGTATCAGAACCTTGGCCATCTATA
TCAGAAAGTGCAAAAGATCTTGTCAGAAAGATGCTCGTGAGAGATCCGAAAAAGCGGCTA
ACAGCTCATGAAGTCCTTTGTCACCCATGGGTCCGTGTTGGCGGTGTAGCTCCAGATAAG
CCTCTTGATTCCGCTGTTCTGACTCGTCTCAATCAATTTTCTGCAATGAACAAATTAAAA
AAGATAGCAGTTAGAGTTATTGCTGAAAGCCTGTCTGCAGAGGAAATTGCAGGACTCAAG
GAAATGTTCAAAATGATAGATACCGATAATAGTGGAAATATTACGTTGGAGGAACTAAAG
AAAGGTTTGGAACGAGTAGGTGCGGATCTGAAGGATTCAGAAATAACTAGTTTAATGCAA
GCGGCAGATACTGATAATAGTGGTACCATTGACTACGGCGAGTTTATAGCAGCTATGCTC
CATCTAAATAAAATTCAGAAGGAAGATCACATGTATGCTGCTTTTTCTTATTTCGATCAA
GATGGTAGCGGGTACATCACAAAGGACGAGCTCCAACAAGCTTGTGAGAAGTTCGGGATG
AGCAATATCCCCATCGAAGAACTTATGCGTGAAGTTGATCAAGACAATGATGGACGCATT
GATTACAATGAGTTTGTAGCAATGATGCAAGACACCGGTCTTGGCGAGCTGGGGAGCAGA
AGGAGGTAA

Peptide Sequence

PEP ID

Solyc01g006730.3.1
PEP Infomation

Calcium-dependent protein kinase (AHRD V3.3 *** H6UM43_TOBAC)
Sequence

MGNTCIGPKLGNNGFLQSVTAAVWKTRQQQHLPLANKGDSNSHKTQEHSSVGSSLNVDGN
DANRFGGTQSTPPPHLKISGNDTNEKNSSPNVSNKPVEGVKQNKPSHVKRVSSIGLKIDS
VLGRKTGNLKEIYSLGRKLGQGQFGTTYLCVDKVHGREMACKSIAKRKLNTEEDVEDVRR
EIQIMHHLAGHPSVVQIVGAYEDAVEVHVVMELCAGGELFDRILQRGHYSEKKAAELARV
IVGVVEACHSMGVMHRDLKPENFLFINQDEDSHLKTIDFGLSVFFKPGEIFTDVVGSPYY
VAPEVLRKHYGSECDIWSAGVIIYILLSGVPPFWEETEQGIFEQVLRGELDFVSEPWPSI
SESAKDLVRKMLVRDPKKRLTAHEVLCHPWVRVGGVAPDKPLDSAVLTRLNQFSAMNKLK
KIAVRVIAESLSAEEIAGLKEMFKMIDTDNSGNITLEELKKGLERVGADLKDSEITSLMQ
AADTDNSGTIDYGEFIAAMLHLNKIQKEDHMYAAFSYFDQDGSGYITKDELQQACEKFGM
SNIPIEELMREVDQDNDGRIDYNEFVAMMQDTGLGELGSRRR*

Transcript Sequence

Transcript ID

Solyc01g006730.3.1
Transcript Infomation

Calcium-dependent protein kinase (AHRD V3.3 *** H6UM43_TOBAC)
Sequence

TTTGATTGTAAGAAAATGGGGAATACATGTATAGGACCCAAATTGGGTAACAATGGGTTC
TTGCAATCAGTAACAGCAGCTGTTTGGAAAACAAGACAACAACAACATTTACCTCTTGCA
AATAAAGGGGACTCAAATTCCCATAAAACTCAAGAACATTCATCGGTTGGTTCGTCGTTG
AATGTAGATGGAAATGATGCTAATAGATTTGGTGGTACTCAGAGTACTCCACCCCCACAC
CTTAAGATTAGTGGAAATGATACTAATGAGAAGAACTCGTCGCCAAACGTTAGTAATAAG
CCAGTGGAAGGAGTGAAACAGAATAAACCTAGTCATGTTAAGCGAGTATCGAGCATTGGG
CTTAAAATCGACTCTGTTTTGGGAAGAAAAACTGGTAATTTGAAGGAGATTTATAGTTTA
GGGAGGAAGCTTGGACAAGGTCAATTCGGGACTACGTATTTATGTGTGGATAAGGTACAT
GGAAGGGAAATGGCGTGTAAGTCCATTGCTAAAAGGAAGTTGAATACCGAGGAGGATGTG
GAGGATGTAAGAAGGGAGATTCAGATTATGCACCATTTGGCAGGGCATCCTAGTGTGGTA
CAAATAGTAGGGGCTTATGAGGATGCTGTTGAAGTACATGTCGTGATGGAGCTTTGTGCA
GGTGGGGAGCTTTTCGACAGGATTTTACAGAGAGGACATTACAGTGAGAAGAAGGCAGCT
GAACTCGCTAGGGTAATTGTAGGTGTCGTGGAAGCATGTCATTCCATGGGTGTCATGCAT
AGGGACCTCAAACCCGAAAACTTTCTTTTTATCAACCAGGATGAAGATTCGCACTTGAAG
ACAATCGACTTTGGGTTATCGGTATTCTTCAAGCCAGGTGAAATCTTCACTGATGTTGTC
GGAAGCCCTTATTATGTTGCTCCGGAAGTGTTGCGTAAGCATTATGGTTCAGAATGTGAT
ATATGGAGTGCTGGAGTGATCATTTACATTTTACTAAGTGGAGTTCCCCCCTTTTGGGAA
GAGACGGAGCAAGGAATATTTGAACAGGTTTTAAGAGGGGAACTTGACTTTGTATCAGAA
CCTTGGCCATCTATATCAGAAAGTGCAAAAGATCTTGTCAGAAAGATGCTCGTGAGAGAT
CCGAAAAAGCGGCTAACAGCTCATGAAGTCCTTTGTCACCCATGGGTCCGTGTTGGCGGT
GTAGCTCCAGATAAGCCTCTTGATTCCGCTGTTCTGACTCGTCTCAATCAATTTTCTGCA
ATGAACAAATTAAAAAAGATAGCAGTTAGAGTTATTGCTGAAAGCCTGTCTGCAGAGGAA
ATTGCAGGACTCAAGGAAATGTTCAAAATGATAGATACCGATAATAGTGGAAATATTACG
TTGGAGGAACTAAAGAAAGGTTTGGAACGAGTAGGTGCGGATCTGAAGGATTCAGAAATA
ACTAGTTTAATGCAAGCGGCAGATACTGATAATAGTGGTACCATTGACTACGGCGAGTTT
ATAGCAGCTATGCTCCATCTAAATAAAATTCAGAAGGAAGATCACATGTATGCTGCTTTT
TCTTATTTCGATCAAGATGGTAGCGGGTACATCACAAAGGACGAGCTCCAACAAGCTTGT
GAGAAGTTCGGGATGAGCAATATCCCCATCGAAGAACTTATGCGTGAAGTTGATCAAGAC
AATGATGGACGCATTGATTACAATGAGTTTGTAGCAATGATGCAAGACACCGGTCTTGGC
GAGCTGGGGAGCAGAAGGAGGTAAGTGTTGGTATTTTAGAGACGTTAAAAGCCTCGATAA
AATCATACTACGCGTACATCTCTACGTATCCGTGTTCATAAGTACATCAACATGAGAATG
TTTCACTGTATATATCATACATACATGTAAAGATTAGTCAGGCAATTGGAGAGGGGAAGG
CTAGTTTTTTCTTGCTTATTAGCATTACCATTTTGTATCTTTTTATTTGTATATTTCTCC
TCTTTTTTTTTTTTCATTTCTTTGTAAAATTATTTTTCATAACTTCACTTATTTAGATTT
ATAA