Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g006690.3.1
CDS Infomation

DNA double-strand break repair rad50 ATPase (AHRD V3.3 *** A0A061GZ54_THECC)
Sequence

ATGGCAAGTGCTACTACATCATCATCAACAAATAAAATTCAAGAATATGATGAGGTTACA
AGTTACAAAAACAAGAATTGTGAAGTTTTTGTTAATAGACAAGAAATTAAAGATGCAATT
GCTAAAGCAATTGAATTAAGAGCTTTACATGCTGCCCTTTTACAACAACAACAAGGGAAT
AGTCCTATGAAGAAGTTCCCTTCTTCTGCTTCTCCAACTCTTTCACTTCATTCTCACCAT
TTTTCTTCTCAAGATTATCCTATTTTCACACCAAGCTATGAAGATGAACCATTGCCAGGA
TACAAACAACTACACTTAGATCACAATCCAAACTATGCTGAAGTTTGGGATGAATATGGA
GTAGTAAATGGTAACAATGAATCCGTTTTATCGGATTACAGAAAGGCGAATTCGACCTTC
AAAAATGGATTTACTAACAGTCTGATCAACTTAGAACCCCACATGTGTCCAGCTGATGAT
CAGAGATCGGTCACGAGCTCGTGTACTGATCATGTCACTACGCGTAAAGCCTCTCCCATC
GCTCGTTACATCAAGTCTCGGAGAAACTCATTAGGGGACTTGAACTCTATCTCATCTTGC
AACAAGTGTAAGCCTGCAACAATTAGTACTGAGGTTGATGGTGGTGGTAGTAGTACTAGC
AAGAGTGGTAAGAACTCGAATGTCATCGTGCCATTGACGGACTCACATGTTTCTGTTCAA
TCGCAGCCAAAGAGTAAAGGCGGGATGAACTTGTCGTGGCTGTTCCCTAAGCTAAAGAAG
AAAAACAAGGTTGAGATTTCACCAAACCGAACAGATCAATCCGATGAGGTTTTAAAGGAT
CACCATATAGGGATGGTTTCAATCGAGACGTTGAAGAAAGAGCTAATGGAAGCAAACGAG
AGCAGAGATGCAGCGTTGATTGAAGTCTCGGGAATGAAGTCGTCTTTAGGTGAGCTAAAG
CAAAAGTTAGAGTACTTAGAAACTTACTGTGAAGAGCTGAAAAAGGCCTTAAGGCAAGCA
ATTCAAGCTACAGAGTCCCCTGTATCCTCCAACAAGCTAAGAACTTTTCCTAATGGAAAA
TCCATCGATGGGGACGGAGAAAATGTGATCCCGGTTAATGATGAGGTAATGCTAGAAGGG
TTCTTACAGATGGTATCGGAGTCAAGATTATCGGTGAAACAGTTCAGCAAGACTCTAATA
GGACAGATTGAAGCAACAGACAATTTGTTAACCGATAACTTGAACCTTTTGCTTCAACCT
TACAAGCTATCTCTCAACTCGAAGTACTCGAAAGCAGTACTATACCACATTGAATCCATC
ATAAACCAATCACTTTTTCAAGACTTCGAAAACTGTGTGTTCCAAAAGAATGGCTCAGCA
AAACACTTAGACCCTCAACAAGATCGCCACGCTCAGTTCTCATCATTTGTCGCGCTGAGG
AACCTAAGTTGGAACGAGGTGTTGAGGAAAGGTACAAAGTACTATAGTGAAGAGTTCAGT
AAGTTCTGTGATCAGAAAATGAGTTGCATTATCGCAACGCTTAATTGGACAAGACCATGG
CCTGAACAACTCCTCCAAGCGTTCTTCGTTGCTGCTAAGTGCATCTGGTTGCTGCATTTG
TTAGCCTTTTCGTTCAATCCTTCCCTCGGGATTCTACGAGTGGAAGAGAATAGAACTTTC
GATATGCATTACATGGAGGACGTCTTCGCGGATAGGCAAAGATCACAAGGTCCTAGCAAG
GTTAAGGTCATGGTTATGCCTGGTTTTTATGTGCATGATAGAGTACTTAGGTGTAAGGTT
ATATGCAGGTACAAAAATGTATCATAG

Peptide Sequence

PEP ID

Solyc01g006690.3.1
PEP Infomation

DNA double-strand break repair rad50 ATPase (AHRD V3.3 *** A0A061GZ54_THECC)
Sequence

MASATTSSSTNKIQEYDEVTSYKNKNCEVFVNRQEIKDAIAKAIELRALHAALLQQQQGN
SPMKKFPSSASPTLSLHSHHFSSQDYPIFTPSYEDEPLPGYKQLHLDHNPNYAEVWDEYG
VVNGNNESVLSDYRKANSTFKNGFTNSLINLEPHMCPADDQRSVTSSCTDHVTTRKASPI
ARYIKSRRNSLGDLNSISSCNKCKPATISTEVDGGGSSTSKSGKNSNVIVPLTDSHVSVQ
SQPKSKGGMNLSWLFPKLKKKNKVEISPNRTDQSDEVLKDHHIGMVSIETLKKELMEANE
SRDAALIEVSGMKSSLGELKQKLEYLETYCEELKKALRQAIQATESPVSSNKLRTFPNGK
SIDGDGENVIPVNDEVMLEGFLQMVSESRLSVKQFSKTLIGQIEATDNLLTDNLNLLLQP
YKLSLNSKYSKAVLYHIESIINQSLFQDFENCVFQKNGSAKHLDPQQDRHAQFSSFVALR
NLSWNEVLRKGTKYYSEEFSKFCDQKMSCIIATLNWTRPWPEQLLQAFFVAAKCIWLLHL
LAFSFNPSLGILRVEENRTFDMHYMEDVFADRQRSQGPSKVKVMVMPGFYVHDRVLRCKV
ICRYKNVS*

Transcript Sequence

Transcript ID

Solyc01g006690.3.1
Transcript Infomation

DNA double-strand break repair rad50 ATPase (AHRD V3.3 *** A0A061GZ54_THECC)
Sequence

TCTTTTTAGTCCTCCAAAATTCCTTTCACTAGATATCATACAATCCATCATAAAAAAAAA
ACCCCTAAAAAAACCAACCATTGAATTCCAAGAATGTAGATATACATAACACCACAAAAC
ACACACAAAAAAAAAAAAAACACTAGTAAATTTTTTTTCTTTCATTTTTCACTAATGGCA
AGTGCTACTACATCATCATCAACAAATAAAATTCAAGAATATGATGAGGTTACAAGTTAC
AAAAACAAGAATTGTGAAGTTTTTGTTAATAGACAAGAAATTAAAGATGCAATTGCTAAA
GCAATTGAATTAAGAGCTTTACATGCTGCCCTTTTACAACAACAACAAGGGAATAGTCCT
ATGAAGAAGTTCCCTTCTTCTGCTTCTCCAACTCTTTCACTTCATTCTCACCATTTTTCT
TCTCAAGATTATCCTATTTTCACACCAAGCTATGAAGATGAACCATTGCCAGGATACAAA
CAACTACACTTAGATCACAATCCAAACTATGCTGAAGTTTGGGATGAATATGGAGTAGTA
AATGGTAACAATGAATCCGTTTTATCGGATTACAGAAAGGCGAATTCGACCTTCAAAAAT
GGATTTACTAACAGTCTGATCAACTTAGAACCCCACATGTGTCCAGCTGATGATCAGAGA
TCGGTCACGAGCTCGTGTACTGATCATGTCACTACGCGTAAAGCCTCTCCCATCGCTCGT
TACATCAAGTCTCGGAGAAACTCATTAGGGGACTTGAACTCTATCTCATCTTGCAACAAG
TGTAAGCCTGCAACAATTAGTACTGAGGTTGATGGTGGTGGTAGTAGTACTAGCAAGAGT
GGTAAGAACTCGAATGTCATCGTGCCATTGACGGACTCACATGTTTCTGTTCAATCGCAG
CCAAAGAGTAAAGGCGGGATGAACTTGTCGTGGCTGTTCCCTAAGCTAAAGAAGAAAAAC
AAGGTTGAGATTTCACCAAACCGAACAGATCAATCCGATGAGGTTTTAAAGGATCACCAT
ATAGGGATGGTTTCAATCGAGACGTTGAAGAAAGAGCTAATGGAAGCAAACGAGAGCAGA
GATGCAGCGTTGATTGAAGTCTCGGGAATGAAGTCGTCTTTAGGTGAGCTAAAGCAAAAG
TTAGAGTACTTAGAAACTTACTGTGAAGAGCTGAAAAAGGCCTTAAGGCAAGCAATTCAA
GCTACAGAGTCCCCTGTATCCTCCAACAAGCTAAGAACTTTTCCTAATGGAAAATCCATC
GATGGGGACGGAGAAAATGTGATCCCGGTTAATGATGAGGTAATGCTAGAAGGGTTCTTA
CAGATGGTATCGGAGTCAAGATTATCGGTGAAACAGTTCAGCAAGACTCTAATAGGACAG
ATTGAAGCAACAGACAATTTGTTAACCGATAACTTGAACCTTTTGCTTCAACCTTACAAG
CTATCTCTCAACTCGAAGTACTCGAAAGCAGTACTATACCACATTGAATCCATCATAAAC
CAATCACTTTTTCAAGACTTCGAAAACTGTGTGTTCCAAAAGAATGGCTCAGCAAAACAC
TTAGACCCTCAACAAGATCGCCACGCTCAGTTCTCATCATTTGTCGCGCTGAGGAACCTA
AGTTGGAACGAGGTGTTGAGGAAAGGTACAAAGTACTATAGTGAAGAGTTCAGTAAGTTC
TGTGATCAGAAAATGAGTTGCATTATCGCAACGCTTAATTGGACAAGACCATGGCCTGAA
CAACTCCTCCAAGCGTTCTTCGTTGCTGCTAAGTGCATCTGGTTGCTGCATTTGTTAGCC
TTTTCGTTCAATCCTTCCCTCGGGATTCTACGAGTGGAAGAGAATAGAACTTTCGATATG
CATTACATGGAGGACGTCTTCGCGGATAGGCAAAGATCACAAGGTCCTAGCAAGGTTAAG
GTCATGGTTATGCCTGGTTTTTATGTGCATGATAGAGTACTTAGGTGTAAGGTTATATGC
AGGTACAAAAATGTATCATAGTTAGGGTTTCTCT