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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g006500.3.1
CDS Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** A0A061DV75_THECC)
Sequence

ATGGCTTCCTTCTTCGGACCCTCCAATCCAATTCCTCCATCATCATTCGGACCACCAAAA
ACCGACCCGTTAAGCCGCCGGAATGACCCGTTAACCCACCGGAAAGTTAGTGTACCGGGA
TCCAAACAGGAATCTTCTTCAATGGAGTTTGAGAAGCTGAAGGTGAAGGAAGCAAAGGAA
AGGAAAGAGGAAACAAACAAAAAGATAGCTTCACAGAAAGCTGTATCGATTATTCTTCGA
AGAGAAGCTGCTAAAGCAGTGATTGAGTATAAGAAGAAGAAAGGGAATTCGAAGAAATTA
TTGCCTCGTACTGTTCTTGAAGCTCTTCATGAACGTATTACTGCTTTGCGTTGGGAATCT
GCTCTTAAGGTCTTTGAACTCCTCCAGGAGCAGTTGTGGTACAGGCCCAATCCCGGTATT
TATATCAAATTAATTGTCATGCTTGGGAAATGTAAGGAACCTGAGAAAGCTCAATCTTTA
TTCGAGATGATGGTGGAGGAAGGTTGTGTCGTGAATCAAGAAGCTTACACTGCTCTTTTG
TCCGCCTATAGCCGTAGTGGTCGCTTTCACGAAGCTTTTTCTATCCTGGAAGAGATGAAG
AACATTCCGAACTGCCTCCCGGATGTCTTCACATATTCCATCCTGATAAAATCCTGCCTG
CAGGTTTATGACTTCGACAAAGTGCAAATTCTGCTTTCCGACATGGAATGTTTGGGGATC
AAGGCCAATACAGTAACATATAATACTCTCATTGATTCCTATGGGAAAGCGAAAAGGTTC
AAAGAGATGGAATCGACACTTGTTGAGATGCTACGGCGAAGAGACTGTAAGCCAGATGTC
TGGACCATGAACTCAACACTGAGAGCATTTGGTGGCAGCGGGCAAATTGAAATGATGGAA
AAATGCTATGAGAAGTTTCAGAGTGCTGGAATTGAACCTAGTATCAAGACATTCAACATA
CTGTTAGATTCATACGGGAAAACAGAAAATTACGAGAAAATGGGTGCTGTGATGGAATTT
ATGCAGAAATATCATTTTTCATGGACCATAGTTACTTACAATATCGTAATAGATGCATTT
GGAAGGGCTGGAGATTTAAAGCAAATGGAATTTCTTTTTAGGCTGATGCAGTCTGAGAGG
ATAAAACCGAACTGTGTTACTCTTTGTTCTCTCGTAAGAGCTTATGGGAAAGCTGGCAAA
GCTGAAAAACTTGGAGCTGTTTTGCGGTTTATTGAGAATTCTGACGTGGCACTTGACACC
GTGTTTTTTAACTGTCTAGTGGATGCATATGGGATGATGGGATGCTTCACAGAGTTGAAA
GGGGTGCTCGAGATGATGGAACAAAGTGGATGTAAGCCAGATAAGATAACATACAGAAGT
ATGATCAAAGCATATTCAGTAAATGGAATGACTAACAAAGCATCAGAGCTCCGAAACATA
CTTGCCTCGTTGGAGAAGGCACGATAG

Peptide Sequence

PEP ID

Solyc01g006500.3.1
PEP Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** A0A061DV75_THECC)
Sequence

MASFFGPSNPIPPSSFGPPKTDPLSRRNDPLTHRKVSVPGSKQESSSMEFEKLKVKEAKE
RKEETNKKIASQKAVSIILRREAAKAVIEYKKKKGNSKKLLPRTVLEALHERITALRWES
ALKVFELLQEQLWYRPNPGIYIKLIVMLGKCKEPEKAQSLFEMMVEEGCVVNQEAYTALL
SAYSRSGRFHEAFSILEEMKNIPNCLPDVFTYSILIKSCLQVYDFDKVQILLSDMECLGI
KANTVTYNTLIDSYGKAKRFKEMESTLVEMLRRRDCKPDVWTMNSTLRAFGGSGQIEMME
KCYEKFQSAGIEPSIKTFNILLDSYGKTENYEKMGAVMEFMQKYHFSWTIVTYNIVIDAF
GRAGDLKQMEFLFRLMQSERIKPNCVTLCSLVRAYGKAGKAEKLGAVLRFIENSDVALDT
VFFNCLVDAYGMMGCFTELKGVLEMMEQSGCKPDKITYRSMIKAYSVNGMTNKASELRNI
LASLEKAR*

Transcript Sequence

Transcript ID

Solyc01g006500.3.1
Transcript Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** A0A061DV75_THECC)
Sequence

ATGAAAACAAAATTGGCCTCATATTTTCAGCCATGGCTTCCTTCTTCGGACCCTCCAATC
CAATTCCTCCATCATCATTCGGACCACCAAAAACCGACCCGTTAAGCCGCCGGAATGACC
CGTTAACCCACCGGAAAGTTAGTGTACCGGGATCCAAACAGGAATCTTCTTCAATGGAGT
TTGAGAAGCTGAAGGTGAAGGAAGCAAAGGAAAGGAAAGAGGAAACAAACAAAAAGATAG
CTTCACAGAAAGCTGTATCGATTATTCTTCGAAGAGAAGCTGCTAAAGCAGTGATTGAGT
ATAAGAAGAAGAAAGGGAATTCGAAGAAATTATTGCCTCGTACTGTTCTTGAAGCTCTTC
ATGAACGTATTACTGCTTTGCGTTGGGAATCTGCTCTTAAGGTCTTTGAACTCCTCCAGG
AGCAGTTGTGGTACAGGCCCAATCCCGGTATTTATATCAAATTAATTGTCATGCTTGGGA
AATGTAAGGAACCTGAGAAAGCTCAATCTTTATTCGAGATGATGGTGGAGGAAGGTTGTG
TCGTGAATCAAGAAGCTTACACTGCTCTTTTGTCCGCCTATAGCCGTAGTGGTCGCTTTC
ACGAAGCTTTTTCTATCCTGGAAGAGATGAAGAACATTCCGAACTGCCTCCCGGATGTCT
TCACATATTCCATCCTGATAAAATCCTGCCTGCAGGTTTATGACTTCGACAAAGTGCAAA
TTCTGCTTTCCGACATGGAATGTTTGGGGATCAAGGCCAATACAGTAACATATAATACTC
TCATTGATTCCTATGGGAAAGCGAAAAGGTTCAAAGAGATGGAATCGACACTTGTTGAGA
TGCTACGGCGAAGAGACTGTAAGCCAGATGTCTGGACCATGAACTCAACACTGAGAGCAT
TTGGTGGCAGCGGGCAAATTGAAATGATGGAAAAATGCTATGAGAAGTTTCAGAGTGCTG
GAATTGAACCTAGTATCAAGACATTCAACATACTGTTAGATTCATACGGGAAAACAGAAA
ATTACGAGAAAATGGGTGCTGTGATGGAATTTATGCAGAAATATCATTTTTCATGGACCA
TAGTTACTTACAATATCGTAATAGATGCATTTGGAAGGGCTGGAGATTTAAAGCAAATGG
AATTTCTTTTTAGGCTGATGCAGTCTGAGAGGATAAAACCGAACTGTGTTACTCTTTGTT
CTCTCGTAAGAGCTTATGGGAAAGCTGGCAAAGCTGAAAAACTTGGAGCTGTTTTGCGGT
TTATTGAGAATTCTGACGTGGCACTTGACACCGTGTTTTTTAACTGTCTAGTGGATGCAT
ATGGGATGATGGGATGCTTCACAGAGTTGAAAGGGGTGCTCGAGATGATGGAACAAAGTG
GATGTAAGCCAGATAAGATAACATACAGAAGTATGATCAAAGCATATTCAGTAAATGGAA
TGACTAACAAAGCATCAGAGCTCCGAAACATACTTGCCTCGTTGGAGAAGGCACGATAGC
TTCATAGTTCAAAGACGATCGATAGCAATGAGCCAAAACGTAACTTTGTGCATCACAAGT
TCGTTGGTCAGATAGCTTCTGAGCCATTGTAAGTGGCTTCAGAAATGGTTGAAAGACATT
GCTCATGATGGTCTTAACCTTTAACCGAATGCTGTCAGCAAACATCACCAACGAAAACGA
TCAGTTGGAATTGGACCGCGGTGGAGACGAGCAGTCAATGGTGTCACAAACTCTTGCTTC
ACAGTATCTTGAAGGTCAATTGAAGTTGCAGCTCTTTGACAGCAATCAAAGG