Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc01g005540.3.1
CDS Infomation

Lysine--tRNA ligase (AHRD V3.3 *** K4ASC0_SOLLC)
Sequence

ATGGAAGCTCTGCAGCCATTGAAGCAACTTATCCACTTTACTTCTCTCAGATTTAGACCT
TCTTCTTCTTCTTTTTTTATTGTTCGTTGCTGTTCTTCCACTACAACTGAAGTCACCGGT
AGAGCCGCCGGCGGTGGCCGCAACCGGAGGTCCTCTTCCGGCACCTCTACTTCCACTTCT
GATAAAGAAGCTATTCGTGCTATTCGTATCAAGAAGGTAGAAGAATTGAGAAGCAATGGC
TTGGAACCCTATGCTTACAAGTGGGATCGAACTCACAGTGCCAGTCAACTGCAAGAAATT
TATAAGAATCTGGGAAATGGTGAAGAATCAAAGAGCGAAAATGATTATGTTTCTATATCA
GGAAGAATAGTGGCACGCAGAGCTTTTGGAAAGCTTGCTTTTTTAACTTTGAGAGATGAT
TCTGGCATGATTCAGCTTTATTGTGAGAAGGAAAGGCTTCTAAGTGATCAGTTTGACCAA
TTGAAGACTCTTGTTGATATTGGTGATATATTGGGCGCAAATGGTTCAATTAAGCGCACA
GAGAAAGGGGAGCTATCTGTATGCGTGAACTCATTCTCAATTCTCACGAAGTCATTGCTT
CCATTACCGGACAAATATCATGGCTTAACAGATATAGACAAGCGCTATCGACAGCGGTAT
GTAGACATGATTGCAAATCCTGAGGTTGCTGATACCTTTCGCAAGAGGGCAAAGATTGTA
TCAGAAATACGCCAGTCAGTGGAATCTTTTGGCTTTCTGGAAGTTGAAACACCTGTTCTT
CAGGGAGCAGCTGGTGGTGCAGAAGCTAGGCCGTTCATTACATTTCATAATTCTCTTGGA
AGGGATCTTTATTTGAGAATTGCAACAGAGCTCCATTTGAAAAGAATGCTGGTTGGGGGA
TTCGAAAAAGTTTATGAAATTGGCCGTATATTCCGCAATGAAGGCATTTCAACTCGTCAT
AATCCTGAATTCACCACCATTGAGATGTATGAAGCATACTCTGACTATGAAAGCATGATG
AATATGGCAGAAGAGATTGTGACACGATGTGCCCTTGCAGTTAATGGGAAGCTTAAAATT
GATTACCAGGGTGTGGAGATCTGCTTGGAAAGACCTTGGAGGAGGGAAACAATGCATAAT
CTTGTGAAAGAAGCTACAGGGATTGATTTTAAAAACTTCGAGGACGATCTTAAAGCTGCT
AAAGAACATACTCGTAAAGCAATTGATATTCTTGGTTGTGATCTGGATAAGAGTTCAATT
GAAGCATGCTCTTCTGTTGGCCATTTGCTTAATGAGGTCTTTGAGATGGTAGTAGAACCA
AAGCTTCTACAACCGACTTTTGTCTTGGACTATCCTATTGAAATATCTCCACTGGCTAAA
CCACATAGAAGACATTCAGGCTTAACTGAGAGATTCGAGCTATTCATTTGTGGTCGTGAG
ATGGCAAATGCCTTCTCAGAATTAACCGATCCTCTGGACCAGAGGAGACGCTTGGAAGAG
CAAGTGAGGCAGCATAATGAGAAAAAAGCAGCATCAGGTTTAAGTAAGGCTGGTGCCAAG
GAACAAGAGAACAACGATGATGATGATGACTCGTATGAAGTAACTCTTGACGAAGATTTC
CTTACAGCTTTGGAATACGGAATGCCTCCAGCTTCTGGAATGGGACTTGGCATCGATAGG
CTAGTAATGCTGTTAACAGACTCACCTAGCATCCGCGATGTTATTGCTTTCCCAGTCCTA
AAGATTCAACAATAA

Peptide Sequence

PEP ID

Solyc01g005540.3.1
PEP Infomation

Lysine--tRNA ligase (AHRD V3.3 *** K4ASC0_SOLLC)
Sequence

MEALQPLKQLIHFTSLRFRPSSSSFFIVRCCSSTTTEVTGRAAGGGRNRRSSSGTSTSTS
DKEAIRAIRIKKVEELRSNGLEPYAYKWDRTHSASQLQEIYKNLGNGEESKSENDYVSIS
GRIVARRAFGKLAFLTLRDDSGMIQLYCEKERLLSDQFDQLKTLVDIGDILGANGSIKRT
EKGELSVCVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADTFRKRAKIV
SEIRQSVESFGFLEVETPVLQGAAGGAEARPFITFHNSLGRDLYLRIATELHLKRMLVGG
FEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNMAEEIVTRCALAVNGKLKI
DYQGVEICLERPWRRETMHNLVKEATGIDFKNFEDDLKAAKEHTRKAIDILGCDLDKSSI
EACSSVGHLLNEVFEMVVEPKLLQPTFVLDYPIEISPLAKPHRRHSGLTERFELFICGRE
MANAFSELTDPLDQRRRLEEQVRQHNEKKAASGLSKAGAKEQENNDDDDDSYEVTLDEDF
LTALEYGMPPASGMGLGIDRLVMLLTDSPSIRDVIAFPVLKIQQ*

Transcript Sequence

Transcript ID

Solyc01g005540.3.1
Transcript Infomation

Lysine--tRNA ligase (AHRD V3.3 *** K4ASC0_SOLLC)
Sequence

TAAGTAGAATTAATAAAATAATTTTTGAATTTTATAAACCAAAACTATAAAGACACATAA
TTAAAGCCTAAATAGTGAAATTGGATGAAAAATTGGGTGTAGATAGTGTTTGTTTAAGGG
GAAAGAGAGAAACAATGGAAGCTCTGCAGCCATTGAAGCAACTTATCCACTTTACTTCTC
TCAGATTTAGACCTTCTTCTTCTTCTTTTTTTATTGTTCGTTGCTGTTCTTCCACTACAA
CTGAAGTCACCGGTAGAGCCGCCGGCGGTGGCCGCAACCGGAGGTCCTCTTCCGGCACCT
CTACTTCCACTTCTGATAAAGAAGCTATTCGTGCTATTCGTATCAAGAAGGTAGAAGAAT
TGAGAAGCAATGGCTTGGAACCCTATGCTTACAAGTGGGATCGAACTCACAGTGCCAGTC
AACTGCAAGAAATTTATAAGAATCTGGGAAATGGTGAAGAATCAAAGAGCGAAAATGATT
ATGTTTCTATATCAGGAAGAATAGTGGCACGCAGAGCTTTTGGAAAGCTTGCTTTTTTAA
CTTTGAGAGATGATTCTGGCATGATTCAGCTTTATTGTGAGAAGGAAAGGCTTCTAAGTG
ATCAGTTTGACCAATTGAAGACTCTTGTTGATATTGGTGATATATTGGGCGCAAATGGTT
CAATTAAGCGCACAGAGAAAGGGGAGCTATCTGTATGCGTGAACTCATTCTCAATTCTCA
CGAAGTCATTGCTTCCATTACCGGACAAATATCATGGCTTAACAGATATAGACAAGCGCT
ATCGACAGCGGTATGTAGACATGATTGCAAATCCTGAGGTTGCTGATACCTTTCGCAAGA
GGGCAAAGATTGTATCAGAAATACGCCAGTCAGTGGAATCTTTTGGCTTTCTGGAAGTTG
AAACACCTGTTCTTCAGGGAGCAGCTGGTGGTGCAGAAGCTAGGCCGTTCATTACATTTC
ATAATTCTCTTGGAAGGGATCTTTATTTGAGAATTGCAACAGAGCTCCATTTGAAAAGAA
TGCTGGTTGGGGGATTCGAAAAAGTTTATGAAATTGGCCGTATATTCCGCAATGAAGGCA
TTTCAACTCGTCATAATCCTGAATTCACCACCATTGAGATGTATGAAGCATACTCTGACT
ATGAAAGCATGATGAATATGGCAGAAGAGATTGTGACACGATGTGCCCTTGCAGTTAATG
GGAAGCTTAAAATTGATTACCAGGGTGTGGAGATCTGCTTGGAAAGACCTTGGAGGAGGG
AAACAATGCATAATCTTGTGAAAGAAGCTACAGGGATTGATTTTAAAAACTTCGAGGACG
ATCTTAAAGCTGCTAAAGAACATACTCGTAAAGCAATTGATATTCTTGGTTGTGATCTGG
ATAAGAGTTCAATTGAAGCATGCTCTTCTGTTGGCCATTTGCTTAATGAGGTCTTTGAGA
TGGTAGTAGAACCAAAGCTTCTACAACCGACTTTTGTCTTGGACTATCCTATTGAAATAT
CTCCACTGGCTAAACCACATAGAAGACATTCAGGCTTAACTGAGAGATTCGAGCTATTCA
TTTGTGGTCGTGAGATGGCAAATGCCTTCTCAGAATTAACCGATCCTCTGGACCAGAGGA
GACGCTTGGAAGAGCAAGTGAGGCAGCATAATGAGAAAAAAGCAGCATCAGGTTTAAGTA
AGGCTGGTGCCAAGGAACAAGAGAACAACGATGATGATGATGACTCGTATGAAGTAACTC
TTGACGAAGATTTCCTTACAGCTTTGGAATACGGAATGCCTCCAGCTTCTGGAATGGGAC
TTGGCATCGATAGGCTAGTAATGCTGTTAACAGACTCACCTAGCATCCGCGATGTTATTG
CTTTCCCAGTCCTAAAGATTCAACAATAACGCTTCATGACGAGTTGCTTATTACACACAA
TTTCGCCAATTTTGTGCCAGGATTGTCGTCTTTATTACCTGAGAAATTCGAGTTTGAGCA
AAAAACATCAATAATAGATCCTTTTTTTTTTACGCGAAATATATACAAGTGTTTTTCACA
TCATTTTTGTGATTCTTGCAGTTCTAATAACTGGACATTGTCAATTGTAACTTGATAAGT
GTTGAACACAAAACACTTGTTGGTTTTATTTATTTAGCTTTGATAGATTCTTGTAAAAGA
TACATCATATCTAATTGAAGAAAAAAACTATAGCTAATGCTATTCATTGATTCCTTTTAT
ATTTTTTTTTGAGTTT