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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc00g030510.3.1
CDS Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G07820.1)
Sequence

ATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTTTGGAGAA
TCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGATATTAGT
GAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTACAATTGTG
ATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAAAGGCCCT
ATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAATTAAAACT
GGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGGAACACTT
GATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAAGCTTCCC
AATAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAACATTGGAT
AGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAAATTCAAC
GTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGCAAGCTCT
GTGAATATCACAGAGTCTTCTTTCTCCACGGGAGATGATTGTATCTCCATTGGCGATGAA
ACGGAACAACTTTACATCACTAAAGTCACTTGTGGACCTGGTCATGGTATTAGTGTTGGT
TCCCTTGGTGGAAATCCTGGTGAAAAGCCAGTGGTTGGTGTTTTTGTTAAAAATTGCACT
TTAGTTAGCACTGATAATGGTGTTAGGATCAAGACATGGCCTGCTTCACATCCTGGTGTT
GTATCTGATATACATTTTGAAGATATCATTGTGCAAAATGTTAGCAACCCTATTGTCATT
GATCAAGTTTATTGCCCAAGTGGAAAATGCAACAAAGACTTGCCTTCACAAGTGAAGATT
AGCAAGGTGTCTATCCAAAACATAAAAGGTACATCAAGAACTCAAAATGCAATCTCACTA
ACTTGTAGCAAAGGCTCACCATGTGAAGGTGTTGAAGTTGGAGATGTTGACATTTCATAT
AGTGGTAAAGAAGGGCCAGCAAAATCAAGTTGTGAAAATATTAAGCCAACTTTTAAGGGA
AAACAAACTCCAGCTGTTTGTTCAGCTGGTGCTGATGCTCCTGCTCCCGCCGCCGCCGCT
TCTTAA

Peptide Sequence

PEP ID

Solyc00g030510.3.1
PEP Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G07820.1)
Sequence

MKIKFVYFGLGVLFLAHFGESQNATFDITKYGATANADISEAVGKAFKEACASTSPSTIV
IPKGTFQMNQVLLEGPCKGPIELQIQAILKAPTDPNAIKTGEWLTVNKLDFFTMSGGGTL
DGQGKEAWECKKSKKCTKLPNNLSFNSLTNSIIKDITTLDSKAFHVNVNQCKNLTFTKFN
VSAPADSPNTDGIHVARASSVNITESSFSTGDDCISIGDETEQLYITKVTCGPGHGISVG
SLGGNPGEKPVVGVFVKNCTLVSTDNGVRIKTWPASHPGVVSDIHFEDIIVQNVSNPIVI
DQVYCPSGKCNKDLPSQVKISKVSIQNIKGTSRTQNAISLTCSKGSPCEGVEVGDVDISY
SGKEGPAKSSCENIKPTFKGKQTPAVCSAGADAPAPAAAAS*

Transcript Sequence

Transcript ID

Solyc00g030510.3.1
Transcript Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G07820.1)
Sequence

AATGGATATGAAAATCAAGTTTGTTTATTTTGGATTGGGTGTGTTATTTCTAGCACATTT
TGGAGAATCTCAAAATGCAACTTTTGATATAACCAAATATGGTGCCACAGCCAATGCTGA
TATTAGTGAGGCTGTTGGAAAAGCTTTTAAAGAGGCATGTGCATCAACAAGTCCAAGTAC
AATTGTGATCCCAAAAGGAACATTCCAAATGAACCAAGTGCTATTAGAAGGACCATGCAA
AGGCCCTATTGAACTTCAAATTCAAGCCATTTTGAAAGCACCAACAGATCCTAATGCAAT
TAAAACTGGTGAATGGTTAACAGTAAACAAACTTGATTTCTTCACAATGTCTGGTGGTGG
AACACTTGATGGTCAAGGTAAAGAAGCATGGGAATGCAAAAAGTCAAAAAAGTGCACCAA
GCTTCCCAATAATTTGAGCTTCAACTCCCTCACAAATTCCATAATCAAGGACATAACAAC
ATTGGATAGCAAAGCATTCCATGTGAATGTTAACCAATGCAAGAACTTAACATTCACCAA
ATTCAACGTCAGTGCTCCGGCTGATAGCCCGAACACTGATGGAATCCACGTGGCGAGAGC
AAGCTCTGTGAATATCACAGAGTCTTCTTTCTCCACGGGAGATGATTGTATCTCCATTGG
CGATGAAACGGAACAACTTTACATCACTAAAGTCACTTGTGGACCTGGTCATGGTATTAG
TGTTGGTTCCCTTGGTGGAAATCCTGGTGAAAAGCCAGTGGTTGGTGTTTTTGTTAAAAA
TTGCACTTTAGTTAGCACTGATAATGGTGTTAGGATCAAGACATGGCCTGCTTCACATCC
TGGTGTTGTATCTGATATACATTTTGAAGATATCATTGTGCAAAATGTTAGCAACCCTAT
TGTCATTGATCAAGTTTATTGCCCAAGTGGAAAATGCAACAAAGACTTGCCTTCACAAGT
GAAGATTAGCAAGGTGTCTATCCAAAACATAAAAGGTACATCAAGAACTCAAAATGCAAT
CTCACTAACTTGTAGCAAAGGCTCACCATGTGAAGGTGTTGAAGTTGGAGATGTTGACAT
TTCATATAGTGGTAAAGAAGGGCCAGCAAAATCAAGTTGTGAAAATATTAAGCCAACTTT
TAAGGGAAAACAAACTCCAGCTGTTTGTTCAGCTGGTGCTGATGCTCCTGCTCCCGCCGC
CGCCGCTTCTTAAATGAATAATTAAAAAAAAATAACGA