Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc00g006490.3.1
CDS Infomation

SIT4 phosphatase-associated family protein (AHRD V3.3 *** B9HQ89_POPTR)
Sequence

ATGAAGTTACTATTTTCCTTCTTGAAACCAAGTTGTCCGCATAGTGCGTTGCTTGCTGGG
TATTTTAGTAAGGTTGTGATATGCCTCATGCTGCGGAAGACTGTTCCCCTCATGAACTAT
GTTCAGGCGCACCATGATGTTTACCGCCAGATGGTGGATTTGATTGGTATAACATCCATA
ATGGAGGTTTTAGTCCGACTTGTAGGTGCTGATGATCAAATGTACCCTAACACGACAGAT
GTGATGCAATGGTTGGCTGACAGCAATCTTTTAGAAATGATCGTAGATAAATTGAGCCCT
TCTAGTCCTCCTGAAGTACATGCTAATACAGCAGAGATGCTATGTGCAATAACCAGAAAC
ACACCATCGCCTCTGGCTACAAAACTATCTAGCCCAAGCTTTGTAGCAAGGATCTTTGGT
CATGCCTTTGAAGATTCACACTCAAAGTCTGCCCTTGTCAATTCTTTGGCTGTCTGCATA
TCTCTGTTGGATTCAAAAAGATCAATCCCATCATTTATGATGTATTCCTTCCGGAGCCAG
CATGTTTACGAGTCACCCGTGCATGTCAGTCCTAACACTATTGGTGCAATGTTGCCTAAA
CTCGGTGACTTGGTCAAACTGTTGAATGTGACCTCTGATGAGAAGATTCTACCTACGACA
TATGGTGAACTTAGACCACCTCTCGGGAAACATCGTTTGAAGATTGTGGAATTCTTTTCC
GTGCTACTGAAAGCTGGCAATGAAGCTGCAGAGAAAGAGTTGATCAGCTCTGGAGCAATT
GAAAGAATCCTGGATCTCTTTTTTGAGTACCCTTACAATAATGCATTACATCATCACGTG
GAGAGTATAATAATCTCCTGCATGGAAAGCAAAAACAAAATAATTGTTGACCATCTTTTT
GAAGAGTGTGATTTGATTGGGAAGATACTTCAAACGGATAAACAGTCTACAATTTCTAGT
GATGAAAAACAGCCTACTTTTGCTAACTCTGCAAAACGAGCACCCCGAGTGGGCAACATA
GGACATATAACACGAATTTCTAACAAACTTGTGCAGTTGGGAAAGAATGACAACTACATT
CAAGCACATATTGAGAAAAATATGGAATGGAGCGATTGGCAAACTACCGTATTACAAGAG
CGTAATACAATAGAAAACGTCTACCGATGGGCTTGTGGCCGGCCGACTGCATTACACGAT
CGAATGAGGGACAGTGATGAGGAAGATGTTCATGACAGAGATTATGATGTAGCAGCTTTA
GCCAATAATCTTAGCCAAGTATTCAGATACACCATATATGACAATGATGATGCTGAAGAG
GGTCATACAGCTCTTGAACGAGATGATGAGGATGTTTACTTTGATGATGAATCTGCTGAA
GTTGTGATATCATCCCTCCGATTGGGAGATGATCAGGGGAGTTTGTTCACAAACTCAAAC
TGGTTTGCTTTTCAAGATGATAGACTTGGTGATGCACCTGTGAACACCTCATCTACAGAG
GCAATGGAAGAGATCAACCTTAATGGAACATCAAACGGCGGGAATAGCAATAGTGATGAG
GAGGTGGTAGTTGGAGAGGAGGATGGATTGGCCGAGAGTAGAAACTCTACAGATGGAACA
CCCACTTCTAGTGCAAATGCCTTTATTGGATCGAATTCTGTTAATGATGTCAGTTTCAAT
CAACAAAATCACAAAGCAGGTCCGTCAGATGACATGGCTTTCTTTCACTTTGAGACAACA
GACAATGACGACCCCTTTGGAGACAGGCCTATGCCTGAATGGGCAGCATGGGGCAATGCT
TCAGACTTTCAAGTTGGTAGATCTAATGTGAACCCATTTGAAGATCCCAGTAAGTCTAGT
GGCCATCTGGCGAATTCAGTGGAGGTAGCAACTCCTGTGGTAAGTTTTACTTTTGGTGGT
AGTGAAGAATCTATTCAAAATGGGGTCTCGACCTCTCCAGATTCCAGCAAAAGATCACCC
GGATCTGAGTCTAGTCATAAAGAAGCTGCTGTTCCTTCTATGTTTGAAGAGGATGTTGAA
TTCGTTGGTGTAGAATTAGAGGGTAGTGAAAAGGCAATGGAACATACTCTTAAGGAGGGG
ATCGTTGGGGAGGCTGCTCCATTGAAAAAAAGCATTGCTCCCAAGAGTCCTGAAAAAGAG
AGTACAGATGATGGTGGGGCAGGAGTAACAGAGTACAATGATGCAAACTATTGGAGAGTA
GACCAAGAAGTTGCAGTATTGGAGTAA

Peptide Sequence

PEP ID

Solyc00g006490.3.1
PEP Infomation

SIT4 phosphatase-associated family protein (AHRD V3.3 *** B9HQ89_POPTR)
Sequence

MKLLFSFLKPSCPHSALLAGYFSKVVICLMLRKTVPLMNYVQAHHDVYRQMVDLIGITSI
MEVLVRLVGADDQMYPNTTDVMQWLADSNLLEMIVDKLSPSSPPEVHANTAEMLCAITRN
TPSPLATKLSSPSFVARIFGHAFEDSHSKSALVNSLAVCISLLDSKRSIPSFMMYSFRSQ
HVYESPVHVSPNTIGAMLPKLGDLVKLLNVTSDEKILPTTYGELRPPLGKHRLKIVEFFS
VLLKAGNEAAEKELISSGAIERILDLFFEYPYNNALHHHVESIIISCMESKNKIIVDHLF
EECDLIGKILQTDKQSTISSDEKQPTFANSAKRAPRVGNIGHITRISNKLVQLGKNDNYI
QAHIEKNMEWSDWQTTVLQERNTIENVYRWACGRPTALHDRMRDSDEEDVHDRDYDVAAL
ANNLSQVFRYTIYDNDDAEEGHTALERDDEDVYFDDESAEVVISSLRLGDDQGSLFTNSN
WFAFQDDRLGDAPVNTSSTEAMEEINLNGTSNGGNSNSDEEVVVGEEDGLAESRNSTDGT
PTSSANAFIGSNSVNDVSFNQQNHKAGPSDDMAFFHFETTDNDDPFGDRPMPEWAAWGNA
SDFQVGRSNVNPFEDPSKSSGHLANSVEVATPVVSFTFGGSEESIQNGVSTSPDSSKRSP
GSESSHKEAAVPSMFEEDVEFVGVELEGSEKAMEHTLKEGIVGEAAPLKKSIAPKSPEKE
STDDGGAGVTEYNDANYWRVDQEVAVLE*

Transcript Sequence

Transcript ID

Solyc00g006490.3.1
Transcript Infomation

SIT4 phosphatase-associated family protein (AHRD V3.3 *** B9HQ89_POPTR)
Sequence

TCTCAAAAGTTAGGGTTTTCTACTTTTCTTGCTATTACTATCTCCAATCTCTTCCTTTTT
TTCTCGATTCACTTCTAGGGCTTAGAGATCCGTTTTCAATATGTTTTGGAAGCTCACATC
TCTTTCTGCTTGTTCACCGGTTGAAGCAGTATTAGACAAGGAAAACTTCACATTGGAAGA
GCTTCTCGATGAAGAAGAGATAATTCAAGAATGCAAAGCTTTGAACAACCGTCTCATAAA
TTTTTTAAGAGATAGATCCCAGATTGAGCAGTTGCTGCACTACATTGTTGATGAGCCTTC
TGAGGATGCCGATAACAAGCGGAAGTTTAAGTTTCCTTTCCTTGCCAGTGAAATATTCAC
CTGTGAAATTGATGTTATCCTTAAGACTCTAGTGGAAGAAGAAGAGTTTCAGAGAAGAAA
TTGTTTTGCCCGAGAGTTCAATCCTTTTTATCATCTTGGCGCAGCTCATGAAGTTACTAT
TTTCCTTCTTGAAACCAAGTTGTCCGCATAGTGCGTTGCTTGCTGGGTATTTTAGTAAGG
TTGTGATATGCCTCATGCTGCGGAAGACTGTTCCCCTCATGAACTATGTTCAGGCGCACC
ATGATGTTTACCGCCAGATGGTGGATTTGATTGGTATAACATCCATAATGGAGGTTTTAG
TCCGACTTGTAGGTGCTGATGATCAAATGTACCCTAACACGACAGATGTGATGCAATGGT
TGGCTGACAGCAATCTTTTAGAAATGATCGTAGATAAATTGAGCCCTTCTAGTCCTCCTG
AAGTACATGCTAATACAGCAGAGATGCTATGTGCAATAACCAGAAACACACCATCGCCTC
TGGCTACAAAACTATCTAGCCCAAGCTTTGTAGCAAGGATCTTTGGTCATGCCTTTGAAG
ATTCACACTCAAAGTCTGCCCTTGTCAATTCTTTGGCTGTCTGCATATCTCTGTTGGATT
CAAAAAGATCAATCCCATCATTTATGATGTATTCCTTCCGGAGCCAGCATGTTTACGAGT
CACCCGTGCATGTCAGTCCTAACACTATTGGTGCAATGTTGCCTAAACTCGGTGACTTGG
TCAAACTGTTGAATGTGACCTCTGATGAGAAGATTCTACCTACGACATATGGTGAACTTA
GACCACCTCTCGGGAAACATCGTTTGAAGATTGTGGAATTCTTTTCCGTGCTACTGAAAG
CTGGCAATGAAGCTGCAGAGAAAGAGTTGATCAGCTCTGGAGCAATTGAAAGAATCCTGG
ATCTCTTTTTTGAGTACCCTTACAATAATGCATTACATCATCACGTGGAGAGTATAATAA
TCTCCTGCATGGAAAGCAAAAACAAAATAATTGTTGACCATCTTTTTGAAGAGTGTGATT
TGATTGGGAAGATACTTCAAACGGATAAACAGTCTACAATTTCTAGTGATGAAAAACAGC
CTACTTTTGCTAACTCTGCAAAACGAGCACCCCGAGTGGGCAACATAGGACATATAACAC
GAATTTCTAACAAACTTGTGCAGTTGGGAAAGAATGACAACTACATTCAAGCACATATTG
AGAAAAATATGGAATGGAGCGATTGGCAAACTACCGTATTACAAGAGCGTAATACAATAG
AAAACGTCTACCGATGGGCTTGTGGCCGGCCGACTGCATTACACGATCGAATGAGGGACA
GTGATGAGGAAGATGTTCATGACAGAGATTATGATGTAGCAGCTTTAGCCAATAATCTTA
GCCAAGTATTCAGATACACCATATATGACAATGATGATGCTGAAGAGGGTCATACAGCTC
TTGAACGAGATGATGAGGATGTTTACTTTGATGATGAATCTGCTGAAGTTGTGATATCAT
CCCTCCGATTGGGAGATGATCAGGGGAGTTTGTTCACAAACTCAAACTGGTTTGCTTTTC
AAGATGATAGACTTGGTGATGCACCTGTGAACACCTCATCTACAGAGGCAATGGAAGAGA
TCAACCTTAATGGAACATCAAACGGCGGGAATAGCAATAGTGATGAGGAGGTGGTAGTTG
GAGAGGAGGATGGATTGGCCGAGAGTAGAAACTCTACAGATGGAACACCCACTTCTAGTG
CAAATGCCTTTATTGGATCGAATTCTGTTAATGATGTCAGTTTCAATCAACAAAATCACA
AAGCAGGTCCGTCAGATGACATGGCTTTCTTTCACTTTGAGACAACAGACAATGACGACC
CCTTTGGAGACAGGCCTATGCCTGAATGGGCAGCATGGGGCAATGCTTCAGACTTTCAAG
TTGGTAGATCTAATGTGAACCCATTTGAAGATCCCAGTAAGTCTAGTGGCCATCTGGCGA
ATTCAGTGGAGGTAGCAACTCCTGTGGTAAGTTTTACTTTTGGTGGTAGTGAAGAATCTA
TTCAAAATGGGGTCTCGACCTCTCCAGATTCCAGCAAAAGATCACCCGGATCTGAGTCTA
GTCATAAAGAAGCTGCTGTTCCTTCTATGTTTGAAGAGGATGTTGAATTCGTTGGTGTAG
AATTAGAGGGTAGTGAAAAGGCAATGGAACATACTCTTAAGGAGGGGATCGTTGGGGAGG
CTGCTCCATTGAAAAAAAGCATTGCTCCCAAGAGTCCTGAAAAAGAGAGTACAGATGATG
GTGGGGCAGGAGTAACAGAGTACAATGATGCAAACTATTGGAGAGTAGACCAAGAAGTTG
CAGTATTGGAGTAACTGCATGTGAAAATTTGTTGTTCTTCATTTGTACCTGGAAATCAGC
GCTGATTGTCTGGATACCCATTTTCAGTTGGTGAGATTTGTCAGTTGTGTACAGTAGAAT
TCTCTTCTGTTTGGGATCAAACAATAGGCTAATAGAATGGTTGTAATTGATTATTTGCTG
TTACACTTTTTGATGTTTTATTATTGTCTCGTATTTTTTCAATTATCAAATTTTGATTCT
CTTTTAAAAAACATTTAATATCTTGTATATCCTGATATTATCAAAGTTCTAGATAAAGTA
TATCCAGCTTAAGGCTGGCCAACTGGGCCGCTGGTGTTGGAATAATTTCTCTGCTTTGTT
AAGTTGTGATACAGTTGACTTTTTCATGTGCCATTGGATTGCTTGTGGACGTAGTATCAC
AATGCTATTGTAGGTGACTGCACTTGGTGCGATGATATTAGATGGTGAAGCTATGTGGAG
CTTCCACTTGCACAAGGGGAATTATCAGAAACATACCTACTTTTTCACAAATGATCAATG
TAGGTGTACTTCAAACATGTATCTCCCAAAAACAGACCTGTACATTATCATGTCTTTTAT
ACAACAAACACCAAGGTTATGGAATATACAATCATTTGAGTATTTCTGACTTAAAAAGAG
CAACTGAAATATCGTTGATGAAACACAAACGATGATCCACAAATACGCTTGACACTAGCA
CTCCATGAGATACTTCTGAGGCAAACATCTACAAAATGGATTAATAGCCGAGGTCAATGT
TCAGTGGTAGGCAAATAATTAAAATTTAACCCGATTTATATGGATCATGTTCATGCATGC
CTTCCGCCAAAAACATTTGATATGGAGTTAGTCATAGAATTTTAATTGAAAAAATAACCA
AAATGTTAATCTCTCTCATACTAGATCCTGCAATCAACATATCATCCACATACCAGAGTA
GAAAGACATATGAATCAGTGTATTTCTTGAAGTAACAACAAGGATCCTTTCCA