Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT5G62800.1
CDS Infomation

| Protein with RING/U-box and TRAF-like domain | Chr5:25218663-25219967 FORWARD LENGTH=1047 | 201606
Sequence

ATGGAGGATAGCAACTCTCACCCGCAAAATCAAACATCAAAAAGAAAAAGCTCTCACCCG
CAAAAGAAGCAACGTATGGAGAATGAAACACGATCGGCTAAGTTGTTGGATCTTGATGTT
CTTGACTGTCCGGTTTGCTTCGAGCCGCTCACTATTCCTACCTTTCAGTGTGATGATGGA
CATATAGTTTGCAATTTTTGCTTTGCCAAAGTGAGTAACAAGTGCCCTGGTCCTGGGTGT
GATTTACCCATTGGTAATAAGCGATGCTTCGCAATGGAGAGGGTTCTCGAATCAGCCTTT
GTTCCATGTCAAAATACTGAGTTTGGCTGCACAAAAAGTGTCTCTTATGAAAAAGTGTCA
AGTCACGAAAAGGAATGCAACTACTCTCAATGCTCTTGCCCTAACCTCGAATGCAATTAC
ACTGGCTCATATAACATCATCTACGGTCACTTTATGCGTCGCCATCTTTACAATAGTACG
ATCGTTTCCTCCAAATGGGGATATTCCACTGTTGATGTTCTAATAAACATCAAAGAAAAG
GTTTCAGTTCTCTGGGAATCTCGTCAGAAACTTTTGTTTGTAGTTCAGTGTTTCAAGGAG
CGACATGGTGTTTATGTTACTGTTAGACGCATCGCACCACCTGCTTCAGAATTCAAGAAG
TTCTCGTATCGTCTTTCGTATAGTATCGACGGACATAATGTTACTTACGAATCACCAGAA
GTAAAGAGGCTTCTTGAAGTGAATTCTCAAATCCCTGATGACAGTTTCATGTTTGTCCCT
AACTGTTTACTGCATGGTGAAATGTTGGAGTTGAAGCTTGGCATCAAGAAGTTGAAACAA
ACTTGTATAATCCAAAAGCTTTCTGGTTTGGTTCCCGGTTCGGTTTTGTACATAGTAGGA
TTTTTAATAAAGCCTGCTAATGAGGTTCAGCAAGTTACCATTGCTCAGGAAACTGTTATG
GAGGATCCTCCAACGTCTCTGTTTAAGAATTCAGTACCAATTCGAGAGGATCAAATTCAG
AACGCTATCACAAATTCCATTCGCTAA

Peptide Sequence

PEP ID

AT5G62800.1
PEP Infomation

| Protein with RING/U-box and TRAF-like domain | Chr5:25218663-25219967 FORWARD LENGTH=348 | 201606
Sequence

MEDSNSHPQNQTSKRKSSHPQKKQRMENETRSAKLLDLDVLDCPVCFEPLTIPTFQCDDG
HIVCNFCFAKVSNKCPGPGCDLPIGNKRCFAMERVLESAFVPCQNTEFGCTKSVSYEKVS
SHEKECNYSQCSCPNLECNYTGSYNIIYGHFMRRHLYNSTIVSSKWGYSTVDVLINIKEK
VSVLWESRQKLLFVVQCFKERHGVYVTVRRIAPPASEFKKFSYRLSYSIDGHNVTYESPE
VKRLLEVNSQIPDDSFMFVPNCLLHGEMLELKLGIKKLKQTCIIQKLSGLVPGSVLYIVG
FLIKPANEVQQVTIAQETVMEDPPTSLFKNSVPIREDQIQNAITNSIR

Transcript Sequence

Transcript ID

AT5G62800.1
Transcript Infomation

| Protein with RING/U-box and TRAF-like domain | Chr5:25218634-25219967 FORWARD LENGTH=1076 | 201606
Sequence

CGATTCCATTTCAAGTTAACCTTATCGATATGGAGGATAGCAACTCTCACCCGCAAAATC
AAACATCAAAAAGAAAAAGCTCTCACCCGCAAAAGAAGCAACGTATGGAGAATGAAACAC
GATCGGCTAAGTTGTTGGATCTTGATGTTCTTGACTGTCCGGTTTGCTTCGAGCCGCTCA
CTATTCCTACCTTTCAGTGTGATGATGGACATATAGTTTGCAATTTTTGCTTTGCCAAAG
TGAGTAACAAGTGCCCTGGTCCTGGGTGTGATTTACCCATTGGTAATAAGCGATGCTTCG
CAATGGAGAGGGTTCTCGAATCAGCCTTTGTTCCATGTCAAAATACTGAGTTTGGCTGCA
CAAAAAGTGTCTCTTATGAAAAAGTGTCAAGTCACGAAAAGGAATGCAACTACTCTCAAT
GCTCTTGCCCTAACCTCGAATGCAATTACACTGGCTCATATAACATCATCTACGGTCACT
TTATGCGTCGCCATCTTTACAATAGTACGATCGTTTCCTCCAAATGGGGATATTCCACTG
TTGATGTTCTAATAAACATCAAAGAAAAGGTTTCAGTTCTCTGGGAATCTCGTCAGAAAC
TTTTGTTTGTAGTTCAGTGTTTCAAGGAGCGACATGGTGTTTATGTTACTGTTAGACGCA
TCGCACCACCTGCTTCAGAATTCAAGAAGTTCTCGTATCGTCTTTCGTATAGTATCGACG
GACATAATGTTACTTACGAATCACCAGAAGTAAAGAGGCTTCTTGAAGTGAATTCTCAAA
TCCCTGATGACAGTTTCATGTTTGTCCCTAACTGTTTACTGCATGGTGAAATGTTGGAGT
TGAAGCTTGGCATCAAGAAGTTGAAACAAACTTGTATAATCCAAAAGCTTTCTGGTTTGG
TTCCCGGTTCGGTTTTGTACATAGTAGGATTTTTAATAAAGCCTGCTAATGAGGTTCAGC
AAGTTACCATTGCTCAGGAAACTGTTATGGAGGATCCTCCAACGTCTCTGTTTAAGAATT
CAGTACCAATTCGAGAGGATCAAATTCAGAACGCTATCACAAATTCCATTCGCTAA