Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT5G61060.2
CDS Infomation

| histone deacetylase 5 | Chr5:24567137-24570917 REVERSE LENGTH=1995 | 201606
Sequence

ATGGCTATGGCCGGAGAATCTTCCGGCAAAAAAATTGGAGACTGTGACGGTAAAGTCGCG
GGGAACAGACAGCGAAAGGTGGGTCTTATTTACGACGAGACGATGTGCAAACACGACACA
CCTGACGGCGAGGATCACCCTGAGTGTCCCGACCGCATCAGAGTTATCTGGGAGAAGCTT
CAGCTCGCCGGAGTTTCTCAAAGATGTGTGGTTCTTGGTAGTAGCAAAGCAGAAGATAAG
CATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGTTAAGAGTATTAGCACAAAA
CAGAAAGATTATCGGAGAAACAGGATTGCTTCACAGTTGAATTCGATTTATCTGAATGGA
GGTTCATCTGAAGCCGCATATCTTGCAGCTGGTTCTGTTGTAAAGTTGGCAGAAAAAGTT
GCAGAAGGAGAGTTAGATTGTGGTTTTGCTATTGTCAGGCCCCCAGGGCACCATGCTGAG
GCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTGCCGTTGCTGCTAGTTTTTTA
CTAAACGAAAGACCGGATCTAGGGGTCAAGAAAATTCTGATCGTTGATTGGGATGTCCAT
CACGGAAATGGTACCCAGAAGATGTTTTGGAAAGATCCTCGTGTACTATTTTTCTCTGTT
CATAGGCATGAGTATGGGGGTTTCTATCCAGCGGGTGATGATGGCGATTATAACATGGTT
GGGGAAGGTCCAGGTGAAGGGTTTAACATAAATGTTCCATGGGATCAAGGACGATGTGGA
GATGCAGATTATCTTGCTGCATGGGACCATATCTTGATTCCTGTGGCGAGGGAATTTAAC
CCGGATGTTATTTTTCTTTCAGCTGGATTTGATGCAGCTATTAATGATCCGCTAGGGGGT
TGTTGTGTGACCCCATATGGATATTCAGTTATGTTGAAGAAGGTTGGTGTTGAACTGATG
GAGTTTGCACAAGGAAAGATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGACTCAATT
GCAAAGTCTTCACTTGCATGTGTCCAAGTTTTGCTTGAAGACAAACAAATTCAAGGACCT
CCGGAAGCATACCCATTCGAGTCGACATGGCGTGTCATACAAGCGGTGCGCAAGAGGCTA
TGCACATATTGGCCTTCACTTGCAGATGAATTATCGTGGAAGCTAATTAATCAGAAAACT
CCTACTCCAATCATCCTTATCTCAAGCTCCGACTCTGAAACTGAAGACAACGCCCAAGGA
CTCCTGGATCAAATGTCGAAACTCAGCATTGAAAACCCTCAAGGTACACTACTTGAAAAC
CACCAAGTAGAACCTGCATCTACATCTTGGAGAGCTGATCTCGCAAAGGTTGACGTTTGG
TATGCCTCTTTTGGATCCAACATGTGGAAACCAAGGTTTCTTTGCTATATTCAAGGGGGA
CAGGTCGATGGATTGAAAAAGGTATGTGTTGGCTCAATGGATAAAAGTCCACCAAAGGAA
ACAGTGTGGGAAACATTTCCACATAGATTGTTCTTTGGCCGTGAATCTTCAGTTGGTTGG
GGTGTAGGAGGAGTTGCTTTCACCAACCCCCTTGCTAATCTCATTGATCAAACTCACATG
TGTTTGTACCGTATCACGCTTGAGCAGTTCAATGACGTTCTGTCTCAAGAAAATGGTTTG
AATGTGGATTCAGATTCTCCGGTCTTTGATCTAGCTGCTTTGCAGTTAGTAGATAACAAA
GGATCCATTTTAGAAGCTCCTTTGAATAGTTGGTATGGAAATGTTGTCTGCTTGGGAAAA
GAACGCGACATTCCTATACTTACAATGACTTGCACGCTTTCCGCTGTTGAGAAATTCAAA
TCCGGTGAGATCCCTATAAGACCTCCTGCAAAAGCTTATGCCAACACTTTAATAAGGGGA
CTTGTGGAAGGAGGAAGATTATCTAAAGAAGAAGCTGAGGCTTACATAGACAAGGCTGTG
TCTAAACCTCTCTAG

Peptide Sequence

PEP ID

AT5G61060.2
PEP Infomation

| histone deacetylase 5 | Chr5:24567137-24570917 REVERSE LENGTH=664 | 201606
Sequence

MAMAGESSGKKIGDCDGKVAGNRQRKVGLIYDETMCKHDTPDGEDHPECPDRIRVIWEKL
QLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNG
GSSEAAYLAAGSVVKLAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFL
LNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGGFYPAGDDGDYNMV
GEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLGG
CCVTPYGYSVMLKKVGVELMEFAQGKIVLALEGGYNLDSIAKSSLACVQVLLEDKQIQGP
PEAYPFESTWRVIQAVRKRLCTYWPSLADELSWKLINQKTPTPIILISSSDSETEDNAQG
LLDQMSKLSIENPQGTLLENHQVEPASTSWRADLAKVDVWYASFGSNMWKPRFLCYIQGG
QVDGLKKVCVGSMDKSPPKETVWETFPHRLFFGRESSVGWGVGGVAFTNPLANLIDQTHM
CLYRITLEQFNDVLSQENGLNVDSDSPVFDLAALQLVDNKGSILEAPLNSWYGNVVCLGK
ERDIPILTMTCTLSAVEKFKSGEIPIRPPAKAYANTLIRGLVEGGRLSKEEAEAYIDKAV
SKPL

Transcript Sequence

Transcript ID

AT5G61060.2
Transcript Infomation

| histone deacetylase 5 | Chr5:24566783-24570991 REVERSE LENGTH=2423 | 201606
Sequence

GAGAGCAAAGACTTGACCTTTTTCACTTCCTTCTCACTGATCGTCGAACAATAAGGCCGT
CGCATCTCCCAGTTATGGCTATGGCCGGAGAATCTTCCGGCAAAAAAATTGGAGACTGTG
ACGGTAAAGTCGCGGGGAACAGACAGCGAAAGGTGGGTCTTATTTACGACGAGACGATGT
GCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGACCGCATCAGAGTTA
TCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGGTTCTTGGTAGTAGCA
AAGCAGAAGATAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGTTAAGA
GTATTAGCACAAAACAGAAAGATTATCGGAGAAACAGGATTGCTTCACAGTTGAATTCGA
TTTATCTGAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGTTCTGTTGTAAAGT
TGGCAGAAAAAGTTGCAGAAGGAGAGTTAGATTGTGGTTTTGCTATTGTCAGGCCCCCAG
GGCACCATGCTGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTGCCGTTG
CTGCTAGTTTTTTACTAAACGAAAGACCGGATCTAGGGGTCAAGAAAATTCTGATCGTTG
ATTGGGATGTCCATCACGGAAATGGTACCCAGAAGATGTTTTGGAAAGATCCTCGTGTAC
TATTTTTCTCTGTTCATAGGCATGAGTATGGGGGTTTCTATCCAGCGGGTGATGATGGCG
ATTATAACATGGTTGGGGAAGGTCCAGGTGAAGGGTTTAACATAAATGTTCCATGGGATC
AAGGACGATGTGGAGATGCAGATTATCTTGCTGCATGGGACCATATCTTGATTCCTGTGG
CGAGGGAATTTAACCCGGATGTTATTTTTCTTTCAGCTGGATTTGATGCAGCTATTAATG
ATCCGCTAGGGGGTTGTTGTGTGACCCCATATGGATATTCAGTTATGTTGAAGAAGGTTG
GTGTTGAACTGATGGAGTTTGCACAAGGAAAGATAGTGCTGGCGTTAGAGGGAGGGTACA
ATCTTGACTCAATTGCAAAGTCTTCACTTGCATGTGTCCAAGTTTTGCTTGAAGACAAAC
AAATTCAAGGACCTCCGGAAGCATACCCATTCGAGTCGACATGGCGTGTCATACAAGCGG
TGCGCAAGAGGCTATGCACATATTGGCCTTCACTTGCAGATGAATTATCGTGGAAGCTAA
TTAATCAGAAAACTCCTACTCCAATCATCCTTATCTCAAGCTCCGACTCTGAAACTGAAG
ACAACGCCCAAGGACTCCTGGATCAAATGTCGAAACTCAGCATTGAAAACCCTCAAGGTA
CACTACTTGAAAACCACCAAGTAGAACCTGCATCTACATCTTGGAGAGCTGATCTCGCAA
AGGTTGACGTTTGGTATGCCTCTTTTGGATCCAACATGTGGAAACCAAGGTTTCTTTGCT
ATATTCAAGGGGGACAGGTCGATGGATTGAAAAAGGTATGTGTTGGCTCAATGGATAAAA
GTCCACCAAAGGAAACAGTGTGGGAAACATTTCCACATAGATTGTTCTTTGGCCGTGAAT
CTTCAGTTGGTTGGGGTGTAGGAGGAGTTGCTTTCACCAACCCCCTTGCTAATCTCATTG
ATCAAACTCACATGTGTTTGTACCGTATCACGCTTGAGCAGTTCAATGACGTTCTGTCTC
AAGAAAATGGTTTGAATGTGGATTCAGATTCTCCGGTCTTTGATCTAGCTGCTTTGCAGT
TAGTAGATAACAAAGGATCCATTTTAGAAGCTCCTTTGAATAGTTGGTATGGAAATGTTG
TCTGCTTGGGAAAAGAACGCGACATTCCTATACTTACAATGACTTGCACGCTTTCCGCTG
TTGAGAAATTCAAATCCGGTGAGATCCCTATAAGACCTCCTGCAAAAGCTTATGCCAACA
CTTTAATAAGGGGACTTGTGGAAGGAGGAAGATTATCTAAAGAAGAAGCTGAGGCTTACA
TAGACAAGGCTGTGTCTAAACCTCTCTAGTGTATAATTATTTACTCAGAAACCGCCCGTT
TGAACACGATTTGGAGCTTCGGGTTTCTGAGTTATTCAATTAGGATAAAAACCACAAGTT
TAGGAATATTGTGAGACCTTTGAATTTGTCTTTTGAAAGAGAGGACTGTGTCCTCTGTTA
GCTGTGTTGTGCTTGCTCCCTAAGCAAACTCTCAATGTATTTTAGTTATCTTCGGGTTTT
AGGCTTTACCAAGAAGCTGTATTCGGTAAATGTATTAAAGAACCCTCCAAACTGCTTTAT
ATTGACCGGAGAGAAACATTCTTATTCTTCGGAATGGTACTTTGAAGTTTGAAGAGTTAT
TTTAAAAAAAGATTTAACAGCAC