Gene sequences

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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT5G48500.1
CDS Infomation	\| pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein \| Chr5:19653235-19654017 FORWARD LENGTH=504 \| 201606
Sequence	ATGGACTACGAATACGGAGGAGGAGAGTACTGTCGGAGAGGACACGTGCCAGCTTTTGGA AGCTGGGATTGGAACGACGCCGTTCCATTCACTCAGTGTTTCGAGACAGCAACAACTCAA CAACCAGCTTTTCTTCACTATGCTTCTTACCCTCAAGATCGTGATCTTTACCTCGCCGGT GATCTCTACGACAACCACCACCTTGTAGCTCCGGCCGTTATCATTGTCCCTCGTCGCCGG GCTAAAGTGGGTCAAGAACCAGCGGAGAAGAAGAGAAATGTGTCGAAGCAGCAACACAAC TATAAGACGGAGGCGCGTGAGTTTAACGCGCCGGTAAGCTGTCCAACACCGGTTGTGAAG CGGAGGATGAAGGCACCAAAGCCTGTGGATGAAGACTTGTACAAAGTTTCCCCACAACTT CTCTCAGTCAAATCCAAAAGGAAAAGAGGAGGAGGTGGGTTTGGGTGCATTTCAAGGTGT TTTTTGCCAACACGGGTGCTTTGA

Peptide Sequence

PEP ID	AT5G48500.1
PEP Infomation	\| pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein \| Chr5:19653235-19654017 FORWARD LENGTH=167 \| 201606
Sequence	MDYEYGGGEYCRRGHVPAFGSWDWNDAVPFTQCFETATTQQPAFLHYASYPQDRDLYLAG DLYDNHHLVAPAVIIVPRRRAKVGQEPAEKKRNVSKQQHNYKTEAREFNAPVSCPTPVVK RRMKAPKPVDEDLYKVSPQLLSVKSKRKRGGGGFGCISRCFLPTRVL

Transcript Sequence

Transcript ID	AT5G48500.1
Transcript Infomation	\| pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein \| Chr5:19652980-19654355 FORWARD LENGTH=1097 \| 201606
Sequence	TATTTTCACTTACCCTACACTATATTTTTGAAAACACCACTCTATGCTCAGAGACACACA GTCCCTCACTACTCTTTCTCTATCTCCTACAAGTAGACTTTAAGACAACTTTTGTCTCAG TGTTGAGTAATGTAAAATACCCATCTGGTTATTTATTACGCATAGATCTCTCTCTTCTCT CTTTCTCTATTTAGATTACTTAAAGCAGAGAGGTCCGAACATCATCAATCAAACCCATTC ACAACTACTACGACAATGGACTACGAATACGGAGGAGGAGAGTACTGTCGGAGAGGACAC GTGCCAGCTTTTGGAAGCTGGGATTGGAACGACGCCGTTCCATTCACTCAGTGTTTCGAG ACAGCAACAACTCAACAACCAGCTTTTCTTCACTATGCTTCTTACCCTCAAGATCGTGAT CTTTACCTCGCCGGTGATCTCTACGACAACCACCACCTTGTAGCTCCGGCCGTTATCATT GTCCCTCGTCGCCGGGCTAAAGTGGGTCAAGAACCAGCGGAGAAGAAGAGAAATGTGTCG AAGCAGCAACACAACTATAAGACGGAGGCGCGTGAGTTTAACGCGCCGGTAAGCTGTCCA ACACCGGTTGTGAAGCGGAGGATGAAGGCACCAAAGCCTGTGGATGAAGACTTGTACAAA GTTTCCCCACAACTTCTCTCAGTCAAATCCAAAAGGAAAAGAGGAGGAGGTGGGTTTGGG TGCATTTCAAGGTGTTTTTTGCCAACACGGGTGCTTTGAAGAAACAAGCGTGAGAGACTT GAGTCAGAAGAACACTTTGTTTTTTTTTCTTTTCTTTTTCTAATCCTATTATATATATCA AAAGACTATGCTTGTGAGAGTATGTATTTATGAATGCGTAGGAAAAAAAAAGATGAATGC TAAAAGATAGTAGACCAATGTAGCTTTTGCGAAAAGCTTAGCCATATTATATTAACTAAA CTATAAATGAGACTTGGTTTTGCAAATTATGTATTATATTCGGCTCAGATCATCTAATTA TATATTATGTTGATAGTGTAAGTGATGGGTTTGGTTAGATTAGGGATGTGAAAGGAGTTA AAGCTGAGGGAGGGGAA