Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT5G46100.1
CDS Infomation

| Pentatricopeptide repeat (PPR) superfamily protein | Chr5:18694316-18695734 REVERSE LENGTH=1419 | 201606
Sequence

ATGGGTAGCAAAGTGATGATGTTCAAGTGGTCAAAGAACATCACGCCTTCACAGGTTATC
AAACTGATGCGAGCTGAAAAAGATGTGGAGAAGTCTATGGCAGTTTTTGATTCCGCAACG
GCGGAATACGCAAATGGGTACGTACATGATCAGAGTTCTTTTGGTTATATGGTCTTGAGG
TTGGTCTCTGCTAATAAGTTCAAAGCAGCTGAAGATCTGATTGTTAGAATGAAGATTGAG
AATTGTGTTGTTAGTGAAGATATATTGCTTTCGATATGTCGAGGGTATGGTCGGGTTCAT
AGGCCGTTTGATTCTTTAAGGGTTTTTCACAAAATGAAGGATTTTGATTGTGATCCTAGC
CAGAAGGCTTATGTCACTGTTCTTGCCATTCTCGTGGAAGAGAATCAGTTAAATTTGGCA
TTTAAGTTTTACAAGAATATGAGAGAGATTGGTTTGCCTCCTACTGTGGCATCTCTCAAT
GTTTTGATTAAAGCTCTTTGCAGAAATGACGGAACTGTGGATGCTGGTCTTAAGATTTTT
CTTGAAATGCCTAAGAGAGGGTGTGATCCGGATTCTTACACATATGGAACCTTGATTAGT
GGTTTGTGTAGGTTCGGAAGGATAGATGAGGCGAAGAAGTTGTTTACAGAGATGGTTGAG
AAAGACTGTGCACCAACTGTTGTTACCTATACTTCTCTGATTAACGGTTTGTGTGGATCG
AAAAATGTTGATGAAGCTATGAGATATCTAGAAGAGATGAAAAGTAAAGGCATTGAGCCG
AATGTTTTCACGTACAGTTCTTTGATGGACGGTCTTTGCAAAGATGGGCGTTCTTTGCAA
GCCATGGAACTATTTGAGATGATGATGGCTAGAGGCTGCAGGCCAAACATGGTAACGTAT
ACCACTTTGATCACTGGTCTCTGTAAGGAGCAGAAGATTCAAGAAGCCGTTGAACTTCTT
GATAGAATGAATCTTCAGGGTTTGAAACCTGATGCTGGATTATATGGGAAAGTAATCAGT
GGGTTCTGTGCTATTAGTAAGTTTCGTGAAGCTGCCAATTTCCTTGACGAGATGATTCTT
GGAGGAATTACTCCAAATCGTTTAACCTGGAACATCCATGTTAAGACAAGTAATGAAGTA
GTCCGAGGTCTTTGTGCAAACTATCCAAGTCGTGCATTTACTCTATATCTTAGCATGAGG
AGTAGAGGAATCTCGGTTGAGGTTGAAACACTAGAATCTTTGGTGAAGTGTTTGTGCAAA
AAGGGTGAATTCCAGAAAGCTGTTCAATTAGTCGATGAAATAGTGACTGATGGGTGTATT
CCAAGTAAAGGAACATGGAAGCTACTTATAGGTCACACATTGGATAAAACGATTGTAGGA
GAGGCTTCAGATACTCTTCTCAGAGATTTGGATATCTAA

Peptide Sequence

PEP ID

AT5G46100.1
PEP Infomation

| Pentatricopeptide repeat (PPR) superfamily protein | Chr5:18694316-18695734 REVERSE LENGTH=472 | 201606
Sequence

MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLR
LVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPS
QKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF
LEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGS
KNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTY
TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMIL
GGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCK
KGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEASDTLLRDLDI

Transcript Sequence

Transcript ID

AT5G46100.1
Transcript Infomation

| Pentatricopeptide repeat (PPR) superfamily protein | Chr5:18694316-18695856 REVERSE LENGTH=1541 | 201606
Sequence

TTTGGTTTGAGCCTATCGAAATCGTTTATGCACACAACCTGTTCGACGTAATGCGTAGCT
GAGATTCTTCTCTATAAAAAGGTGTATTCTTTGCTATTGTTGGAAGGTATCATTGTTTAG
TAATGGGTAGCAAAGTGATGATGTTCAAGTGGTCAAAGAACATCACGCCTTCACAGGTTA
TCAAACTGATGCGAGCTGAAAAAGATGTGGAGAAGTCTATGGCAGTTTTTGATTCCGCAA
CGGCGGAATACGCAAATGGGTACGTACATGATCAGAGTTCTTTTGGTTATATGGTCTTGA
GGTTGGTCTCTGCTAATAAGTTCAAAGCAGCTGAAGATCTGATTGTTAGAATGAAGATTG
AGAATTGTGTTGTTAGTGAAGATATATTGCTTTCGATATGTCGAGGGTATGGTCGGGTTC
ATAGGCCGTTTGATTCTTTAAGGGTTTTTCACAAAATGAAGGATTTTGATTGTGATCCTA
GCCAGAAGGCTTATGTCACTGTTCTTGCCATTCTCGTGGAAGAGAATCAGTTAAATTTGG
CATTTAAGTTTTACAAGAATATGAGAGAGATTGGTTTGCCTCCTACTGTGGCATCTCTCA
ATGTTTTGATTAAAGCTCTTTGCAGAAATGACGGAACTGTGGATGCTGGTCTTAAGATTT
TTCTTGAAATGCCTAAGAGAGGGTGTGATCCGGATTCTTACACATATGGAACCTTGATTA
GTGGTTTGTGTAGGTTCGGAAGGATAGATGAGGCGAAGAAGTTGTTTACAGAGATGGTTG
AGAAAGACTGTGCACCAACTGTTGTTACCTATACTTCTCTGATTAACGGTTTGTGTGGAT
CGAAAAATGTTGATGAAGCTATGAGATATCTAGAAGAGATGAAAAGTAAAGGCATTGAGC
CGAATGTTTTCACGTACAGTTCTTTGATGGACGGTCTTTGCAAAGATGGGCGTTCTTTGC
AAGCCATGGAACTATTTGAGATGATGATGGCTAGAGGCTGCAGGCCAAACATGGTAACGT
ATACCACTTTGATCACTGGTCTCTGTAAGGAGCAGAAGATTCAAGAAGCCGTTGAACTTC
TTGATAGAATGAATCTTCAGGGTTTGAAACCTGATGCTGGATTATATGGGAAAGTAATCA
GTGGGTTCTGTGCTATTAGTAAGTTTCGTGAAGCTGCCAATTTCCTTGACGAGATGATTC
TTGGAGGAATTACTCCAAATCGTTTAACCTGGAACATCCATGTTAAGACAAGTAATGAAG
TAGTCCGAGGTCTTTGTGCAAACTATCCAAGTCGTGCATTTACTCTATATCTTAGCATGA
GGAGTAGAGGAATCTCGGTTGAGGTTGAAACACTAGAATCTTTGGTGAAGTGTTTGTGCA
AAAAGGGTGAATTCCAGAAAGCTGTTCAATTAGTCGATGAAATAGTGACTGATGGGTGTA
TTCCAAGTAAAGGAACATGGAAGCTACTTATAGGTCACACATTGGATAAAACGATTGTAG
GAGAGGCTTCAGATACTCTTCTCAGAGATTTGGATATCTAA