Gene sequences

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SNP Detection
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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT5G44390.1
CDS Infomation	\| FAD-binding Berberine family protein \| Chr5:17882329-17884906 REVERSE LENGTH=1629 \| 201606
Sequence	ATGGGAAATTCAAAACCACTCCCTACAATTTCTTGTATTTCAGTTTTTGCTCTATATTTT TCATTCTACACAATAACACTAACTTCTTCAACCTCCCTACAAGATGATTTCATCAAATGT CTTTACCGAAACACAAATGTCCGTTTTACACTCGACAAAACGTTCTTCACTCCTGAAAGA AACGCTTCCATCTTCACAGAAGTTCTTGAATCGACGGCTCAGAATCAAAGATACTTGACC AAGACAATGCCTAAACCGGGTTTCATATTTAAACCGGTTCACGAATCTCACGTCCAAGCT TCCGTCATCTGTTCCAAGAAACTTGAGATACATTTTCGTGTCAGAAGCGGCGGTCATGAT TACGAGGGCGTGTCTTATGTTTCACAGATCGAAAAACCTTTTGTATTGATCGATTTGTCG AAATTGAGACAGATCAATGTTGATATTAAGGACACCAGTGCTTGGGTTGAAGCTGGTGCT ACCGTTGGTGAGCTTTACTACAGAATTGCAGAGAAGAGCAAGTTTCATGGATTCCCTGCA GGTGTTTACCCGAGCTTAGGCATCGGTGGGCATATAACAGGCGGTGCATACGGTTCCTTG ATGAGGAAGTATGGTCTTGCTGCAGATAATGTTCTAGACGCAAAGATCGTTGATGCTAAC GGTAAATTACTCGATAGAGCCTCGATGGGCGAGGATCTGTTTTGGGCAATTAGAGGAGGC AGTGGAGGGAGTTTTGGGATAATTTTGTCATGGAAAATCAAGCTTGTTCCTGTTCCTGAA ACCCTAACCGTCTTCACGGTCACCAAAACATTCGAGCAAGATAGAAGTTTCAAGATTCTT TCAAAGTGGCAAGAAATTGCGGACAATCTTGTTGATGAGCTCTTCTTACGAGTGTTCTTC ACTGTATCTGGAAACAAAGCAAACAAGACAGTGACGATGGCCTACATAGGTCAGTTTCTT GGCGAGAAAGGCACCTTGATGGAGGTAATGAAGAAGGATTTTCCAGAACTTGGGCTAACT CAGAAGGATTGTATAGAAATGAGTTGGATCGATTCCATTATTTACAACTCTGGATTCCCA ACAAACCCTCCTCCTCCTATTGAGATTCTGCTTCAAGCAAAGTCTCCAATCGGAAAAGTT TACTTCAAAGGGAAATCGGATTTCGCTAAAAAACCTATTCCTGTTTTAGGGCTCGAAGGG ATGTTCAAGAAGTTGCTTGAAGAAGACGCAGCGTTAGTAATTTGGACTCCTTACGGTGGA AAGATGGATAAAATCCCTGAATCTGAGATCCCATTTCCGCATAGAAACGGAACCAACTTC ATGATTCAATATTACAGGAGCTGGTCAGATAGTGAGAAAAGACCAAACAGACGCACCAAA TGGATCAGAGAGTTGTACGGATACATGACGCCTTACGTCTCAAGCAATCCAAGACAAGCA TATGTGAACTACAGAGATCTAGACCTGGGACAGAACAAGGACAACTCAAAGTCTAACTTC ATAGAAGCTAAAATATGGGGAGCTAATTATTTCAAAGACAATTTCAACAGATTGGTGAGG ATTAAATCAAAGGTTGATCCAGATAACTTCTTCAGACACGAGCAGAGTATCCCAACTCTG CCCGTATGA

Peptide Sequence

PEP ID	AT5G44390.1
PEP Infomation	\| FAD-binding Berberine family protein \| Chr5:17882329-17884906 REVERSE LENGTH=542 \| 201606
Sequence	MGNSKPLPTISCISVFALYFSFYTITLTSSTSLQDDFIKCLYRNTNVRFTLDKTFFTPER NASIFTEVLESTAQNQRYLTKTMPKPGFIFKPVHESHVQASVICSKKLEIHFRVRSGGHD YEGVSYVSQIEKPFVLIDLSKLRQINVDIKDTSAWVEAGATVGELYYRIAEKSKFHGFPA GVYPSLGIGGHITGGAYGSLMRKYGLAADNVLDAKIVDANGKLLDRASMGEDLFWAIRGG SGGSFGIILSWKIKLVPVPETLTVFTVTKTFEQDRSFKILSKWQEIADNLVDELFLRVFF TVSGNKANKTVTMAYIGQFLGEKGTLMEVMKKDFPELGLTQKDCIEMSWIDSIIYNSGFP TNPPPPIEILLQAKSPIGKVYFKGKSDFAKKPIPVLGLEGMFKKLLEEDAALVIWTPYGG KMDKIPESEIPFPHRNGTNFMIQYYRSWSDSEKRPNRRTKWIRELYGYMTPYVSSNPRQA YVNYRDLDLGQNKDNSKSNFIEAKIWGANYFKDNFNRLVRIKSKVDPDNFFRHEQSIPTL PV

Transcript Sequence

Transcript ID	AT5G44390.1
Transcript Infomation	\| FAD-binding Berberine family protein \| Chr5:17882079-17885012 REVERSE LENGTH=1985 \| 201606
Sequence	GGAAACTCATTTCTTCTTTTACAAGAAAGAACAATATACAACATTTCCATCTTGAAGCCT TATTGTGTGTTTAGCTTCTCTCTTGCATATAATATTCGCTGCTAGGATGGGAAATTCAAA ACCACTCCCTACAATTTCTTGTATTTCAGTTTTTGCTCTATATTTTTCATTCTACACAAT AACACTAACTTCTTCAACCTCCCTACAAGATGATTTCATCAAATGTCTTTACCGAAACAC AAATGTCCGTTTTACACTCGACAAAACGTTCTTCACTCCTGAAAGAAACGCTTCCATCTT CACAGAAGTTCTTGAATCGACGGCTCAGAATCAAAGATACTTGACCAAGACAATGCCTAA ACCGGGTTTCATATTTAAACCGGTTCACGAATCTCACGTCCAAGCTTCCGTCATCTGTTC CAAGAAACTTGAGATACATTTTCGTGTCAGAAGCGGCGGTCATGATTACGAGGGCGTGTC TTATGTTTCACAGATCGAAAAACCTTTTGTATTGATCGATTTGTCGAAATTGAGACAGAT CAATGTTGATATTAAGGACACCAGTGCTTGGGTTGAAGCTGGTGCTACCGTTGGTGAGCT TTACTACAGAATTGCAGAGAAGAGCAAGTTTCATGGATTCCCTGCAGGTGTTTACCCGAG CTTAGGCATCGGTGGGCATATAACAGGCGGTGCATACGGTTCCTTGATGAGGAAGTATGG TCTTGCTGCAGATAATGTTCTAGACGCAAAGATCGTTGATGCTAACGGTAAATTACTCGA TAGAGCCTCGATGGGCGAGGATCTGTTTTGGGCAATTAGAGGAGGCAGTGGAGGGAGTTT TGGGATAATTTTGTCATGGAAAATCAAGCTTGTTCCTGTTCCTGAAACCCTAACCGTCTT CACGGTCACCAAAACATTCGAGCAAGATAGAAGTTTCAAGATTCTTTCAAAGTGGCAAGA AATTGCGGACAATCTTGTTGATGAGCTCTTCTTACGAGTGTTCTTCACTGTATCTGGAAA CAAAGCAAACAAGACAGTGACGATGGCCTACATAGGTCAGTTTCTTGGCGAGAAAGGCAC CTTGATGGAGGTAATGAAGAAGGATTTTCCAGAACTTGGGCTAACTCAGAAGGATTGTAT AGAAATGAGTTGGATCGATTCCATTATTTACAACTCTGGATTCCCAACAAACCCTCCTCC TCCTATTGAGATTCTGCTTCAAGCAAAGTCTCCAATCGGAAAAGTTTACTTCAAAGGGAA ATCGGATTTCGCTAAAAAACCTATTCCTGTTTTAGGGCTCGAAGGGATGTTCAAGAAGTT GCTTGAAGAAGACGCAGCGTTAGTAATTTGGACTCCTTACGGTGGAAAGATGGATAAAAT CCCTGAATCTGAGATCCCATTTCCGCATAGAAACGGAACCAACTTCATGATTCAATATTA CAGGAGCTGGTCAGATAGTGAGAAAAGACCAAACAGACGCACCAAATGGATCAGAGAGTT GTACGGATACATGACGCCTTACGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAG AGATCTAGACCTGGGACAGAACAAGGACAACTCAAAGTCTAACTTCATAGAAGCTAAAAT ATGGGGAGCTAATTATTTCAAAGACAATTTCAACAGATTGGTGAGGATTAAATCAAAGGT TGATCCAGATAACTTCTTCAGACACGAGCAGAGTATCCCAACTCTGCCCGTATGAAGCTA AGCTCATGACAACCACACACAACCATATGATTTGAGTAACCAACTAGGTGTTGTTATCCG ATTGAACCGTGTTTTGCAAATTTAATTACATGTCAAAAAAATATGAATCCGTATGAAATC TTTTAACGTAATTGCATTTTTTTGTCAACTTAATGGACGGTAATCCACAAAACAAGCTAA AACAAAGTCAACATTTTCAAGACATGACAAAAATTGCCTAACTGTCATTATCCGCCGATT CGTTT