Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Arabidopsis thaliana ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT5G42450.1
CDS Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr5:16977297-16978850 FORWARD LENGTH=1554 \| 201606
Sequence	ATGTTGCATATGATTTTATCTCAAAGAGTAATCCTTTTACGAAAATATCACTCTTCTGCA AATGCCCTTGTTACCAAATCACCAAATTCTATCCCCGAGTTGGTTAAACATATTGATTCG GATCTGATACGTAATGCACATAAGGTGTTCGACGAAATTCCTGAGTTAGATGTCATTTCT GCTACAGCGGTGATTGGTCGCTTTGTGAAGGAAAGCAGACATGTGGAAGCAAGTCAAGCC TTCAAAAGGTTGTTGTGTTTAGGCATAAGGCCAAATGAGTTCACGTTTGGCACGGTCATT GGGTCTTCTACAACTTCGAGAGATGTCAAATTGGGTAAGCAGCTTCATTGTTATGCGTTA AAGATGGGACTTGCGTCGAATGTGTTTGTTGGTAGTGCGGTTTTGAACTGTTATGTGAAA CTGAGTACGTTGACAGATGCTCGTAGATGTTTTGATGACACTAGAGACCCAAACGTAGTT TCTATTACCAATTTGATTAGTGGGTACCTTAAGAAACATGAATTTGAAGAAGCTCTTTCG TTGTTTAGAGCAATGCCTGAGAGAAGTGTTGTTACTTGGAATGCAGTTATTGGAGGGTTT AGCCAGACGGGGCGGAACGAAGAGGCTGTGAATACTTTTGTGGATATGTTAAGGGAAGGT GTGGTGATACCTAACGAATCAACCTTCCCTTGTGCTATAACAGCCATATCTAATATAGCT TCTCATGGTGCTGGTAAGAGTATTCACGCCTGCGCTATAAAGTTCTTGGGGAAGCGATTC AATGTCTTTGTTTGGAACTCTCTGATCAGTTTTTACTCAAAATGTGGGAACATGGAAGAT AGTCTTCTGGCTTTCAACAAGCTCGAAGAAGAACAACGGAACATTGTATCTTGGAACTCT ATGATATGGGGTTATGCGCACAACGGAAGAGGAGAAGAAGCTGTAGCCATGTTTGAGAAA ATGGTTAAAGACACAAACCTGAGACCAAACAACGTGACAATCCTTGGAGTATTATTTGCG TGTAACCATGCGGGCCTAATACAAGAAGGGTACATGTATTTTAACAAAGCTGTGAATGAT TATGATGATCCAAACCTACTAGAACTGGAGCACTATGCTTGTATGGTGGATATGCTTTCT AGGTCCGGCCGTTTCAAAGAAGCAGAAGAGCTTATTAAAAGTATGCCTCTTGACCCAGGA ATCGGGTTTTGGAAGGCATTGCTTGGGGGATGCCAGATTCACTCAAACAAGCGTCTGGCT AAATTAGCGGCGTCAAAAATCTTGGAATTGGATCCTAGAGATGTTTCATCATACGTAATG CTTTCAAATGCTTATTCTGCTATGGAAAACTGGCAGAATGTGTCGCTGATACGGAGGAAA ATGAAGGAGACTGGTTTAAAGCGTTTTACGGGATGTAGTTGGATTGAAGTTAGAGACCAA ATTCGTGTCTTTGTGAATGCTGACAAGAACAACGAACTTAAGGATGAAGTCTATAGGATG TTGGCACTTGTTTCTCAACATCTTGAAGAAAATGAATGTTGGAAAGACTTGTGA

Peptide Sequence

PEP ID	AT5G42450.1
PEP Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr5:16977297-16978850 FORWARD LENGTH=517 \| 201606
Sequence	MLHMILSQRVILLRKYHSSANALVTKSPNSIPELVKHIDSDLIRNAHKVFDEIPELDVIS ATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGSSTTSRDVKLGKQLHCYAL KMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITNLISGYLKKHEFEEALS LFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITAISNIA SHGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMEDSLLAFNKLEEEQRNIVSWNS MIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEGYMYFNKAVND YDDPNLLELEHYACMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGCQIHSNKRLA KLAASKILELDPRDVSSYVMLSNAYSAMENWQNVSLIRRKMKETGLKRFTGCSWIEVRDQ IRVFVNADKNNELKDEVYRMLALVSQHLEENECWKDL

Transcript Sequence

Transcript ID	AT5G42450.1
Transcript Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr5:16977207-16979058 FORWARD LENGTH=1852 \| 201606
Sequence	CAAGAGTGAATTTGGAATCAAAGGTTAGAGAATTCATCTTCGTTTGCTTGTTTTTGTTCT CTCTCCCAGTTCCTGGGTTCACGACGAGGAATGTTGCATATGATTTTATCTCAAAGAGTA ATCCTTTTACGAAAATATCACTCTTCTGCAAATGCCCTTGTTACCAAATCACCAAATTCT ATCCCCGAGTTGGTTAAACATATTGATTCGGATCTGATACGTAATGCACATAAGGTGTTC GACGAAATTCCTGAGTTAGATGTCATTTCTGCTACAGCGGTGATTGGTCGCTTTGTGAAG GAAAGCAGACATGTGGAAGCAAGTCAAGCCTTCAAAAGGTTGTTGTGTTTAGGCATAAGG CCAAATGAGTTCACGTTTGGCACGGTCATTGGGTCTTCTACAACTTCGAGAGATGTCAAA TTGGGTAAGCAGCTTCATTGTTATGCGTTAAAGATGGGACTTGCGTCGAATGTGTTTGTT GGTAGTGCGGTTTTGAACTGTTATGTGAAACTGAGTACGTTGACAGATGCTCGTAGATGT TTTGATGACACTAGAGACCCAAACGTAGTTTCTATTACCAATTTGATTAGTGGGTACCTT AAGAAACATGAATTTGAAGAAGCTCTTTCGTTGTTTAGAGCAATGCCTGAGAGAAGTGTT GTTACTTGGAATGCAGTTATTGGAGGGTTTAGCCAGACGGGGCGGAACGAAGAGGCTGTG AATACTTTTGTGGATATGTTAAGGGAAGGTGTGGTGATACCTAACGAATCAACCTTCCCT TGTGCTATAACAGCCATATCTAATATAGCTTCTCATGGTGCTGGTAAGAGTATTCACGCC TGCGCTATAAAGTTCTTGGGGAAGCGATTCAATGTCTTTGTTTGGAACTCTCTGATCAGT TTTTACTCAAAATGTGGGAACATGGAAGATAGTCTTCTGGCTTTCAACAAGCTCGAAGAA GAACAACGGAACATTGTATCTTGGAACTCTATGATATGGGGTTATGCGCACAACGGAAGA GGAGAAGAAGCTGTAGCCATGTTTGAGAAAATGGTTAAAGACACAAACCTGAGACCAAAC AACGTGACAATCCTTGGAGTATTATTTGCGTGTAACCATGCGGGCCTAATACAAGAAGGG TACATGTATTTTAACAAAGCTGTGAATGATTATGATGATCCAAACCTACTAGAACTGGAG CACTATGCTTGTATGGTGGATATGCTTTCTAGGTCCGGCCGTTTCAAAGAAGCAGAAGAG CTTATTAAAAGTATGCCTCTTGACCCAGGAATCGGGTTTTGGAAGGCATTGCTTGGGGGA TGCCAGATTCACTCAAACAAGCGTCTGGCTAAATTAGCGGCGTCAAAAATCTTGGAATTG GATCCTAGAGATGTTTCATCATACGTAATGCTTTCAAATGCTTATTCTGCTATGGAAAAC TGGCAGAATGTGTCGCTGATACGGAGGAAAATGAAGGAGACTGGTTTAAAGCGTTTTACG GGATGTAGTTGGATTGAAGTTAGAGACCAAATTCGTGTCTTTGTGAATGCTGACAAGAAC AACGAACTTAAGGATGAAGTCTATAGGATGTTGGCACTTGTTTCTCAACATCTTGAAGAA AATGAATGTTGGAAAGACTTGTGAATACAACACATCATGTTTTTTCTCTTCTGCTGTTCT TAAAAAGGAAGAAGTAAATCGCATAGTAATTTGTATCACTGCAGCAATCAAACAGTATCA AAACGATACCATCACTATTTATTGATATAAGATATATCAATAAGCCTGTGACTTGCATAG TCATTACTTCATTACTACTACAACCTTTTTATCTGCTAACATCACCTTGTCA