Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Arabidopsis thaliana ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT5G42340.1
CDS Infomation	\| Plant U-Box 15 \| Chr5:16928086-16930367 REVERSE LENGTH=1983 \| 201606
Sequence	ATGGTCGATGTGATGGATACAGATGAAGAAGCCACAGGAGATGCAGAGAACCGTGATGAA GAAGTTACCGCAGAAGAACCGATTCACGATGAGGTTGTGGATGCGGTGGAGATTCATGAG GAAGAAGTGAAAGAAGATGATGATGATTGTGAAGGATTGGTGAGCGATATCGTATCGATT GTCGAGTTTTTGGATCAGATTAACGGTTATCGAAGAACACAACAAAAAGAATGTTTTAAT CTCGTTAGACGATTGAAGATTCTTATTCCATTTTTGGATGAGATTCGAGGTTTTGAATCA CCAAGTTGCAAGCATTTTTTAAATCGTTTGAGGAAAGTGTTTCTTGCTGCCAAGAAATTA TTAGAAACTTGCAGCAATGGCAGTAAAATCTATATGGCATTGGATGGCGAAACAATGATG ACGAGATTTCATTCGATTTACGAAAAGTTGAATCGTGTTCTTGTTAAAGCTCCTTTTGAT GAATTAATGATTTCTGGTGATGCGAAAGACGAGATTGATTCATTGTGTAAACAACTGAAA AAAGCAAAAAGAAGAACAGATACACAAGACATAGAGCTAGCAGTAGACATGATGGTGGTA TTCTCAAAAACCGATCCTCGAAACGCAGATAGCGCGATAATAGAGAGGCTAGCGAAAAAG CTTGAGCTACAAACAATTGATGATTTAAAGACAGAAACTATAGCCATACAAAGCTTAATC CAAGACAAAGGAGGTTTGAACATAGAGACTAAACAACATATCATTGAGCTTCTTAACAAG TTCAAGAAGCTTCAAGGTCTTGAAGCTACCGACATTCTCTACCAACCCGTCATCAATAAA GCAATCACCAAGTCAACGTCTCTAATATTACCTCATGAGTTTTTGTGTCCTATAACACTC GAAATAATGCTTGACCCGGTTATCATCGCCACTGGACAGACATATGAGAAGGAGAGTATA CAGAAATGGTTTGACGCAGGACATAAGACTTGTCCTAAAACAAGACAGGAGTTAGATCAT CTCTCTCTTGCACCTAACTTCGCTTTAAAGAACTTGATTATGCAGTGGTGTGAGAAGAAC AATTTCAAGATTCCAGAGAAAGAAGTAAGTCCTGACTCACAAAATGAGCAGAAAGATGAG GTCTCTTTGCTGGTGGAAGCGTTATCGTCAAGCCAACTGGAAGAACAACGAAGATCAGTG AAGCAGATGCGTTTGCTAGCCAGAGAAAATCCCGAGAACCGCGTTTTAATAGCGAATGCA GGAGCGATTCCTTTGTTAGTTCAACTCCTTTCTTACCCTGATTCAGGAATCCAAGAAAAC GCGGTAACGACATTGTTGAATCTATCTATCGACGAGGTCAACAAGAAACTCATTTCAAAT GAAGGAGCTATTCCAAACATTATTGAAATCCTTGAAAATGGAAACAGAGAGGCAAGAGAG AACTCTGCTGCAGCTTTGTTTAGTTTATCGATGCTCGATGAGAACAAAGTAACTATCGGA TTATCGAATGGGATACCGCCTTTAGTCGATTTACTACAACATGGGACATTAAGAGGGAAG AAAGATGCTCTCACTGCACTCTTTAACTTGTCTCTTAACTCAGCTAATAAAGGAAGAGCT ATCGATGCTGGTATTGTTCAACCTTTGCTTAACCTTCTTAAAGATAAAAACTTAGGGATG ATCGATGAAGCGCTTTCGATTCTGTTGCTGCTTGCATCACACCCTGAAGGACGTCAAGCC ATTGGACAACTCTCCTTCATTGAAACACTTGTGGAATTCATCAGACAAGGCACCCCGAAA AACAAAGAGTGTGCGACCTCGGTGCTGCTTGAACTAGGCTCTAACAACTCGTCTTTTATC CTCGCAGCGCTTCAATTCGGAGTTTATGAATATCTGGTAGAAATAACCACCTCTGGAACA AACAGAGCTCAGAGAAAAGCAAATGCTCTTATACAACTCATAAGCAAATCTGAACAAATT TAG

Peptide Sequence

PEP ID	AT5G42340.1
PEP Infomation	\| Plant U-Box 15 \| Chr5:16928086-16930367 REVERSE LENGTH=660 \| 201606
Sequence	MVDVMDTDEEATGDAENRDEEVTAEEPIHDEVVDAVEIHEEEVKEDDDDCEGLVSDIVSI VEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIRGFESPSCKHFLNRLRKVFLAAKKL LETCSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDELMISGDAKDEIDSLCKQLK KAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIERLAKKLELQTIDDLKTETIAIQSLI QDKGGLNIETKQHIIELLNKFKKLQGLEATDILYQPVINKAITKSTSLILPHEFLCPITL EIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFALKNLIMQWCEKN NFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANA GAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGAIPNIIEILENGNREARE NSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRA IDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPK NKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQRKANALIQLISKSEQI

Transcript Sequence

Transcript ID	AT5G42340.1
Transcript Infomation	\| Plant U-Box 15 \| Chr5:16927893-16930532 REVERSE LENGTH=2341 \| 201606
Sequence	GTGAGAATCACATTTCAAAAAAAGTTGGGTGAGAAGAAAAACAAATCTTTTTTTTCTTTT GTCTCTAAAAATGAAACAAGAGAAAATTAATCTTACAATTTCCTTAACGTTTGCTTTTTC CTTCAACATCTTTGGAATCAATTCAAACGCGATAGAGAGTCTCTAATGGTCGATGTGATG GATACAGATGAAGAAGCCACAGGAGATGCAGAGAACCGTGATGAAGAAGTTACCGCAGAA GAACCGATTCACGATGAGGTTGTGGATGCGGTGGAGATTCATGAGGAAGAAGTGAAAGAA GATGATGATGATTGTGAAGGATTGGTGAGCGATATCGTATCGATTGTCGAGTTTTTGGAT CAGATTAACGGTTATCGAAGAACACAACAAAAAGAATGTTTTAATCTCGTTAGACGATTG AAGATTCTTATTCCATTTTTGGATGAGATTCGAGGTTTTGAATCACCAAGTTGCAAGCAT TTTTTAAATCGTTTGAGGAAAGTGTTTCTTGCTGCCAAGAAATTATTAGAAACTTGCAGC AATGGCAGTAAAATCTATATGGCATTGGATGGCGAAACAATGATGACGAGATTTCATTCG ATTTACGAAAAGTTGAATCGTGTTCTTGTTAAAGCTCCTTTTGATGAATTAATGATTTCT GGTGATGCGAAAGACGAGATTGATTCATTGTGTAAACAACTGAAAAAAGCAAAAAGAAGA ACAGATACACAAGACATAGAGCTAGCAGTAGACATGATGGTGGTATTCTCAAAAACCGAT CCTCGAAACGCAGATAGCGCGATAATAGAGAGGCTAGCGAAAAAGCTTGAGCTACAAACA ATTGATGATTTAAAGACAGAAACTATAGCCATACAAAGCTTAATCCAAGACAAAGGAGGT TTGAACATAGAGACTAAACAACATATCATTGAGCTTCTTAACAAGTTCAAGAAGCTTCAA GGTCTTGAAGCTACCGACATTCTCTACCAACCCGTCATCAATAAAGCAATCACCAAGTCA ACGTCTCTAATATTACCTCATGAGTTTTTGTGTCCTATAACACTCGAAATAATGCTTGAC CCGGTTATCATCGCCACTGGACAGACATATGAGAAGGAGAGTATACAGAAATGGTTTGAC GCAGGACATAAGACTTGTCCTAAAACAAGACAGGAGTTAGATCATCTCTCTCTTGCACCT AACTTCGCTTTAAAGAACTTGATTATGCAGTGGTGTGAGAAGAACAATTTCAAGATTCCA GAGAAAGAAGTAAGTCCTGACTCACAAAATGAGCAGAAAGATGAGGTCTCTTTGCTGGTG GAAGCGTTATCGTCAAGCCAACTGGAAGAACAACGAAGATCAGTGAAGCAGATGCGTTTG CTAGCCAGAGAAAATCCCGAGAACCGCGTTTTAATAGCGAATGCAGGAGCGATTCCTTTG TTAGTTCAACTCCTTTCTTACCCTGATTCAGGAATCCAAGAAAACGCGGTAACGACATTG TTGAATCTATCTATCGACGAGGTCAACAAGAAACTCATTTCAAATGAAGGAGCTATTCCA AACATTATTGAAATCCTTGAAAATGGAAACAGAGAGGCAAGAGAGAACTCTGCTGCAGCT TTGTTTAGTTTATCGATGCTCGATGAGAACAAAGTAACTATCGGATTATCGAATGGGATA CCGCCTTTAGTCGATTTACTACAACATGGGACATTAAGAGGGAAGAAAGATGCTCTCACT GCACTCTTTAACTTGTCTCTTAACTCAGCTAATAAAGGAAGAGCTATCGATGCTGGTATT GTTCAACCTTTGCTTAACCTTCTTAAAGATAAAAACTTAGGGATGATCGATGAAGCGCTT TCGATTCTGTTGCTGCTTGCATCACACCCTGAAGGACGTCAAGCCATTGGACAACTCTCC TTCATTGAAACACTTGTGGAATTCATCAGACAAGGCACCCCGAAAAACAAAGAGTGTGCG ACCTCGGTGCTGCTTGAACTAGGCTCTAACAACTCGTCTTTTATCCTCGCAGCGCTTCAA TTCGGAGTTTATGAATATCTGGTAGAAATAACCACCTCTGGAACAAACAGAGCTCAGAGA AAAGCAAATGCTCTTATACAACTCATAAGCAAATCTGAACAAATTTAGACTTGTTCTAAA CATTTTCATCTTCTACTGTAATTATAGGTTTCATAATTTTTTTATTTTTTTTCATTCTGT ATCAAACCAGTGTCTGTTGTATATTTGTATATCCTCTTCCATTTAGTCATATACTATTTG ATTTTCCTCTCTGTAATTTCTAACTCTCACGTTGATAATTCCTCAAAGTTGATTGTTGTA T