Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Arabidopsis thaliana ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT5G40400.2
CDS Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr5:16166231-16168276 FORWARD LENGTH=2046 \| 201606
Sequence	ATGTGTTCAAAGACCCGAAGGTCAAATCCCGTCTCTGTCAGAGGAGATGCCAACCATCTC TCCTTTCTACGAACACAATCAATTGTTCCGTATGTAAACATATATATACTTCACCTAAAC GGAATTCTTAACCGATGTGGGACAAATACTTATTCCTTTTCTTCAAAACCTCTCCCCTCC ACTGCCTCTGTCTCTCTGTTTTCGCTCAGATTTATGAAGAATCTCGTTTCAAACCTTCGA TTTTTCTCCTCTTATTCTTCTTCGATAGTTCCGCGATGTAGTAACATACCTAAACCAATT CTCAATCCTCTCTACAATTTACTTCCCCAGTCTCAAAACCCTAGTAAAATCGTGGATGTT ATCTGTTCAACACTCAACCACAGTGATTATTCCGTCTTGTTACCTAACCTTCGTGACGAG GTGAAATCGCTGATTCCTCATTTGGGTTATCCTGAAATCTCGAGGGTTTTGCTTAGGTTT CAGTCTGATGCTTCTCGAGCTATTACGTTCTTTAAATGGGTTAAATTTGATTTGGGGAAG AGGCCTAATGTTGGTAACTACTGTTTGTTGCTTCACATTCTTGTGTCTTCTAAGAAGTTT CCTTTAGCTATGCAGTTTCTCTGTGAATTGATTGAATTGACATCTAAGAAAGAAGAAGTG GATGTGTTCAGAGTTTTGGTTTCTGCTACTGATGAATGTAATTGGGATCCTGTTGTTTTT GATATGCTTGTGAAAGGTTATCTGAAATTGGGTTTGGTAGAAGAAGGGTTTAGGGTTTTT AGAGAGGTGCTTGATTCCGGTTTTAGTGTTAGTGTTGTTACTTGTAATCATCTACTGAAT GGGTTGTTGAAGTTGGATTTGATGGAGGATTGTTGGCAAGTGTATAGTGTGATGTGTAGA GTTGGAATCCATCCCAATACGTATACGTTCAACATTCTTACTAATGTGTTCTGCAACGAT TCAAATTTTCGTGAAGTTGATGACTTTTTGGAGAAGATGGAAGAAGAAGGTTTTGAGCCT GATTTGGTTACTTATAATACGTTAGTGAGTAGTTATTGTAGAAGAGGAAGGTTGAAAGAA GCGTTTTATCTGTATAAGATCATGTATAGGCGTCGTGTTGTGCCTGATTTAGTTACTTAT ACATCGCTTATCAAAGGTCTTTGTAAAGACGGGAGAGTTAGAGAAGCTCATCAGACTTTT CACAGGATGGTAGACAGAGGAATTAAGCCTGATTGCATGTCTTACAATACTCTTATTTAT GCTTATTGCAAAGAAGGAATGATGCAACAATCGAAGAAGCTGTTACATGAAATGCTTGGG AATAGCGTTGTTCCCGACAGGTTTACTTGTAAGGTTATAGTTGAAGGATTTGTGAGAGAA GGACGGTTACTTTCTGCTGTTAATTTTGTTGTCGAGCTTAGAAGGTTAAAGGTTGATATC CCATTTGAAGTTTGCGACTTTCTGATAGTAAGTTTATGCCAGGAAGGTAAACCATTTGCA GCAAAGCATCTATTAGATCGAATTATCGAAGAGGAAGGTCACGAGGCTAAACCAGAGACT TACAATAACTTAATTGAGTCTTTGTCCCGTTGTGATGCTATAGAGGAGGCATTGGTTCTA AAAGGCAAACTCAAAAACCAGAATCAAGTACTTGATGCCAAGACATACCGAGCTCTTATA GGCTGCTTGTGTAGGATTGGTAGGAACCGTGAAGCCGAGTCTTTGATGGCAGAAATGTTT GATTCTGAAGTGAAACCGGATTCATTTATATGCGGGGCTTTGGTTTATGGATACTGCAAG GAATTGGATTTCGATAAAGCTGAGAGACTATTGAGTTTGTTTGCTATGGAGTTTAGAATC TTTGACCCAGAGAGTTACAATTCGCTTGTTAAGGCTGTTTGTGAAACGGGATGTGGATAT AAGAAAGCGTTAGAGCTTCAAGAAAGAATGCAAAGACTCGGGTTTGTTCCAAACAGGTTA ACTTGTAAGTACTTGATCCAAGTGTTGGAACAGCCTTCTTTGCCCAATCATCTGCCTGAG AATTGA

Peptide Sequence

PEP ID	AT5G40400.2
PEP Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr5:16166231-16168276 FORWARD LENGTH=681 \| 201606
Sequence	MCSKTRRSNPVSVRGDANHLSFLRTQSIVPYVNIYILHLNGILNRCGTNTYSFSSKPLPS TASVSLFSLRFMKNLVSNLRFFSSYSSSIVPRCSNIPKPILNPLYNLLPQSQNPSKIVDV ICSTLNHSDYSVLLPNLRDEVKSLIPHLGYPEISRVLLRFQSDASRAITFFKWVKFDLGK RPNVGNYCLLLHILVSSKKFPLAMQFLCELIELTSKKEEVDVFRVLVSATDECNWDPVVF DMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVMCR VGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKE AFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIY AYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDI PFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCDAIEEALVL KGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICGALVYGYCK ELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCETGCGYKKALELQERMQRLGFVPNRL TCKYLIQVLEQPSLPNHLPEN

Transcript Sequence

Transcript ID	AT5G40400.2
Transcript Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr5:16166231-16168853 FORWARD LENGTH=2623 \| 201606
Sequence	ATGTGTTCAAAGACCCGAAGGTCAAATCCCGTCTCTGTCAGAGGAGATGCCAACCATCTC TCCTTTCTACGAACACAATCAATTGTTCCGTATGTAAACATATATATACTTCACCTAAAC GGAATTCTTAACCGATGTGGGACAAATACTTATTCCTTTTCTTCAAAACCTCTCCCCTCC ACTGCCTCTGTCTCTCTGTTTTCGCTCAGATTTATGAAGAATCTCGTTTCAAACCTTCGA TTTTTCTCCTCTTATTCTTCTTCGATAGTTCCGCGATGTAGTAACATACCTAAACCAATT CTCAATCCTCTCTACAATTTACTTCCCCAGTCTCAAAACCCTAGTAAAATCGTGGATGTT ATCTGTTCAACACTCAACCACAGTGATTATTCCGTCTTGTTACCTAACCTTCGTGACGAG GTGAAATCGCTGATTCCTCATTTGGGTTATCCTGAAATCTCGAGGGTTTTGCTTAGGTTT CAGTCTGATGCTTCTCGAGCTATTACGTTCTTTAAATGGGTTAAATTTGATTTGGGGAAG AGGCCTAATGTTGGTAACTACTGTTTGTTGCTTCACATTCTTGTGTCTTCTAAGAAGTTT CCTTTAGCTATGCAGTTTCTCTGTGAATTGATTGAATTGACATCTAAGAAAGAAGAAGTG GATGTGTTCAGAGTTTTGGTTTCTGCTACTGATGAATGTAATTGGGATCCTGTTGTTTTT GATATGCTTGTGAAAGGTTATCTGAAATTGGGTTTGGTAGAAGAAGGGTTTAGGGTTTTT AGAGAGGTGCTTGATTCCGGTTTTAGTGTTAGTGTTGTTACTTGTAATCATCTACTGAAT GGGTTGTTGAAGTTGGATTTGATGGAGGATTGTTGGCAAGTGTATAGTGTGATGTGTAGA GTTGGAATCCATCCCAATACGTATACGTTCAACATTCTTACTAATGTGTTCTGCAACGAT TCAAATTTTCGTGAAGTTGATGACTTTTTGGAGAAGATGGAAGAAGAAGGTTTTGAGCCT GATTTGGTTACTTATAATACGTTAGTGAGTAGTTATTGTAGAAGAGGAAGGTTGAAAGAA GCGTTTTATCTGTATAAGATCATGTATAGGCGTCGTGTTGTGCCTGATTTAGTTACTTAT ACATCGCTTATCAAAGGTCTTTGTAAAGACGGGAGAGTTAGAGAAGCTCATCAGACTTTT CACAGGATGGTAGACAGAGGAATTAAGCCTGATTGCATGTCTTACAATACTCTTATTTAT GCTTATTGCAAAGAAGGAATGATGCAACAATCGAAGAAGCTGTTACATGAAATGCTTGGG AATAGCGTTGTTCCCGACAGGTTTACTTGTAAGGTTATAGTTGAAGGATTTGTGAGAGAA GGACGGTTACTTTCTGCTGTTAATTTTGTTGTCGAGCTTAGAAGGTTAAAGGTTGATATC CCATTTGAAGTTTGCGACTTTCTGATAGTAAGTTTATGCCAGGAAGGTAAACCATTTGCA GCAAAGCATCTATTAGATCGAATTATCGAAGAGGAAGGTCACGAGGCTAAACCAGAGACT TACAATAACTTAATTGAGTCTTTGTCCCGTTGTGATGCTATAGAGGAGGCATTGGTTCTA AAAGGCAAACTCAAAAACCAGAATCAAGTACTTGATGCCAAGACATACCGAGCTCTTATA GGCTGCTTGTGTAGGATTGGTAGGAACCGTGAAGCCGAGTCTTTGATGGCAGAAATGTTT GATTCTGAAGTGAAACCGGATTCATTTATATGCGGGGCTTTGGTTTATGGATACTGCAAG GAATTGGATTTCGATAAAGCTGAGAGACTATTGAGTTTGTTTGCTATGGAGTTTAGAATC TTTGACCCAGAGAGTTACAATTCGCTTGTTAAGGCTGTTTGTGAAACGGGATGTGGATAT AAGAAAGCGTTAGAGCTTCAAGAAAGAATGCAAAGACTCGGGTTTGTTCCAAACAGGTTA ACTTGTAAGTACTTGATCCAAGTGTTGGAACAGCCTTCTTTGCCCAATCATCTGCCTGAG AATTGAAGCAACGCTTGATGCGATGAAATTTGTATTCCTTAATCTTGGCCAGATGCGTAA CTTAAAGAAAATACAAACTTAGAGGATGAGTACTGCGGATCGTTTTAAGTGGTGGTGAAG TCTGTAGGATCTCGCACAAAGGGTCCAGTACTTGCTTAGCATCCTGGAGGAAAATGTTGT CCTTATAATTCAGTGCCAAGAGCATTTGCCTCAGCTTTTGCTGCTTTGTTTGCTGTTGAA AGCTTACCTCGACTCCAAAACACAAGTCTTCTCTGTTGATCAAACAAGAGCCAAGCAATG CCGATCGGTGTGTTCTTATTGATACAGGATGCATCCAGATAACAGGTTTATTGAGTTAGT TGGAACTAAAGGATGCACCTGAAACGGTTGCAGATTGCCACAATTTTGTATTCTGTAGTA ATTGTAAGAGTTTGAGAATGATTGTCTATTGGACCCCTTGTCTTGTGTCTTGTGGTTTCG TTCTTTCCATGGATGTGAAGTTAAAGTAAACTTTGTGTAGTTGCAGCAGTTTCTTTGTAA CTCTATGAAACTTCTCCAAGCAATTTCTTTGTAACTCTATTAC