Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT5G23120.2
CDS Infomation

| photosystem II stability/assembly factor%2C chloroplast (HCF136) | Chr5:7778085-7780463 FORWARD LENGTH=1281 | 201606
Sequence

ATGTATTCTCGAGGCGGGAGAGAGAAAGAGAAGAGAGTGAGAGAGATCGAAGAACATTTA
CACACATCAATGGCGTCTCTGCAACTCTGCGACGGTTATCTTCTCTTCAAGCCCTCTGTT
TCTCCTCGATTCCTCTCTCAACGCATTTCTCATCGCCTAATCCCTAAAGCCTCATCTTCT
CCTCCTCCATCTCCATCACCATCATCGTCCTCTTCATCCTTATCTTTCAGTCGGCGGGAG
CTTCTGTACCAATCGGCAGCTGTATCACTCTCGCTTTCTTCCATTGTTGGACCAGCGAGA
GCTGATGAACAGTTATCCGAATGGGAAAGAGTGTTTCTCCCAATCGATCCCGGTGTTGTT
CTTCTCGACATTGCTTTCGTCCCCGACGAACCTAGCCGAGGGTTTTTACTTGGAACGAGA
CAGACTTTGTTAGAGACTAAAGATGGTGGAAGCACTTGGAATCCACGTTCGATTCCTTCA
GCTGAAGAAGAAGATTTCAATTATAGATTCAATTCGATTAGCTTTAAAGGCAAAGAAGGA
TGGATTATTGGCAAACCTGCGATTTTATTGTACACTGCTGATGCTGGAGAGAATTGGGAT
AGGATTCCTCTAAGTTCTCAGCTTCCTGGAGATATGGTGTTTATAAAAGCGACAGAAGAT
AAGAGTGCAGAGATGGTTACTGATGAAGGTGCTATTTATGTTACTTCAAACAGGGGATAT
AACTGGAAAGCTGCTATTCAGGAAACTGTTTCAGCTACCTTGAACAGAACAGTATCCAGT
GGAATCAGTGGTGCTAGTTACTACACGGGAACTTTCAGTGCTGTTAATCGTTCACCTGAT
GGAAGATATGTCGCTGTTTCGAGCCGTGGTAACTTCTTTCTGACATGGGAGCCTGGGCAG
CCTTACTGGCAACCACACAATAGAGCTGTTGCTAGAAGAATTCAGAACATGGGATGGAGA
GCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGTGGAGGACTTTATCTTAGCAAAGGTACT
GGGATTACAGAGGAGTTTGAAGAAGTTCCAGTACAAAGCCGTGGCTTTGGCATTCTAGAT
GTTGGATATCGCTCAGAGGAAGAAGCATGGGCAGCAGGAGGCAGTGGCATACTACTGAGA
ACAAGAAATGGAGGCAAATCATGGAACCGTGACAAAGCTGCTGATAATATCGCAGCTAAC
CTATACGCAGTCAAATTTGTGGATGACAAGAAAGGATTTGTGCTTGGCAACGATGGAGTC
TTGCTCCGATATGTTGGCTGA

Peptide Sequence

PEP ID

AT5G23120.2
PEP Infomation

| photosystem II stability/assembly factor%2C chloroplast (HCF136) | Chr5:7778085-7780463 FORWARD LENGTH=426 | 201606
Sequence

MYSRGGREKEKRVREIEEHLHTSMASLQLCDGYLLFKPSVSPRFLSQRISHRLIPKASSS
PPPSPSPSSSSSSLSFSRRELLYQSAAVSLSLSSIVGPARADEQLSEWERVFLPIDPGVV
LLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEG
WIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAIYVTSNRGY
NWKAAIQETVSATLNRTVSSGISGASYYTGTFSAVNRSPDGRYVAVSSRGNFFLTWEPGQ
PYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILD
VGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGV
LLRYVG

Transcript Sequence

Transcript ID

AT5G23120.2
Transcript Infomation

| photosystem II stability/assembly factor%2C chloroplast (HCF136) | Chr5:7778017-7780907 FORWARD LENGTH=1793 | 201606
Sequence

ACAATTACACCAATAATAAAACGACACGTGTACACTACGTAGACGTTAGATAACCACAGC
AAAAGGATATGTATTCTCGAGGCGGGAGAGAGAAAGAGAAGAGAGTGAGAGAGATCGAAG
AACATTTACACACATCAATGGCGTCTCTGCAACTCTGCGACGGTTATCTTCTCTTCAAGC
CCTCTGTTTCTCCTCGATTCCTCTCTCAACGCATTTCTCATCGCCTAATCCCTAAAGCCT
CATCTTCTCCTCCTCCATCTCCATCACCATCATCGTCCTCTTCATCCTTATCTTTCAGTC
GGCGGGAGCTTCTGTACCAATCGGCAGCTGTATCACTCTCGCTTTCTTCCATTGTTGGAC
CAGCGAGAGCTGATGAACAGTTATCCGAATGGGAAAGAGTGTTTCTCCCAATCGATCCCG
GTGTTGTTCTTCTCGACATTGCTTTCGTCCCCGACGAACCTAGCCGAGGGTTTTTACTTG
GAACGAGACAGACTTTGTTAGAGACTAAAGATGGTGGAAGCACTTGGAATCCACGTTCGA
TTCCTTCAGCTGAAGAAGAAGATTTCAATTATAGATTCAATTCGATTAGCTTTAAAGGCA
AAGAAGGATGGATTATTGGCAAACCTGCGATTTTATTGTACACTGCTGATGCTGGAGAGA
ATTGGGATAGGATTCCTCTAAGTTCTCAGCTTCCTGGAGATATGGTGTTTATAAAAGCGA
CAGAAGATAAGAGTGCAGAGATGGTTACTGATGAAGGTGCTATTTATGTTACTTCAAACA
GGGGATATAACTGGAAAGCTGCTATTCAGGAAACTGTTTCAGCTACCTTGAACAGAACAG
TATCCAGTGGAATCAGTGGTGCTAGTTACTACACGGGAACTTTCAGTGCTGTTAATCGTT
CACCTGATGGAAGATATGTCGCTGTTTCGAGCCGTGGTAACTTCTTTCTGACATGGGAGC
CTGGGCAGCCTTACTGGCAACCACACAATAGAGCTGTTGCTAGAAGAATTCAGAACATGG
GATGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGTGGAGGACTTTATCTTAGCA
AAGGTACTGGGATTACAGAGGAGTTTGAAGAAGTTCCAGTACAAAGCCGTGGCTTTGGCA
TTCTAGATGTTGGATATCGCTCAGAGGAAGAAGCATGGGCAGCAGGAGGCAGTGGCATAC
TACTGAGAACAAGAAATGGAGGCAAATCATGGAACCGTGACAAAGCTGCTGATAATATCG
CAGCTAACCTATACGCAGTCAAATTTGTGGATGACAAGAAAGGATTTGTGCTTGGCAACG
ATGGAGTCTTGCTCCGATATGTTGGCTGAAGAATTTAAAAATAAAAAAGAGGTTAAATTG
AAATGGTTATGTTTCAATCCTTCTCTGTAAAGCCTTTAACTGCGTTTTAATACTACATTA
CACTATTGTATACATTCCCTTCACAAAATATATATAATTTTGTGTTTCTTCTGAAAAGCT
TTGTTTCTCACTGTTAGTTGGAGTTGGATTTGATCTCATCTATGTATGTTTATAACCTAT
TTTCAGCCAAGAAATTTCATTGTGTAGGCAACCAAGAAAGATGACAAGAAATCTTCGCCA
GAGATTTTATTACTCACTTTATTGTCAATTCATAAGAGAAACATATATTGATAAATCCGT
TTGTGGATTAGACCGCTTTTTATTTACTATTTAAAAATTGTCAATTACTACATATAAATA
AATTTGGTATGCGGTGGGTTGTTGTCCGTGGAACGGTGACTGAACCGAACAAT