Gene sequences

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SNP Detection
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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT5G11310.1
CDS Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr5:3606490-3608409 FORWARD LENGTH=1809 \| 201606
Sequence	ATGAACTCTCTGTTCACCGCCTTCCGCCGCAACCTCCTCTTAAACCCTAATCCTCACCGC AACTTCTTTCTTCATAGATTGTTATCATCATCTCGCCGTTCATCCCCGCTCATTCCCGTC GAGCCTCTCATCCAACGGATACAATCACCCGCCGTACCCGATTCTACATGTACTCCACCG CAACAAAACACCGTCTCGAAAACCGATCTCTCTACTATATCGAATCTTCTCGAGAACACT GATGTTGTTCCCGGTTCGAGTCTCGAGTCAGCTTTAGATGAAACCGGAATCGAACCGAGT GTTGAGTTGGTTCACGCGTTGTTCGATCGGTTAAGTTCATCGCCGATGTTGCTTCACTCA GTGTTCAAATGGGCGGAGATGAAACCTGGGTTTACACTTTCTCCTTCACTTTTCGATTCT GTTGTCAATTCTCTATGTAAAGCTCGTGAATTTGAAATTGCTTGGTCGTTGGTTTTTGAT CGAGTGAGAAGCGATGAAGGATCGAATTTGGTTTCTGCAGATACGTTCATCGTTTTGATC AGACGGTATGCTCGTGCTGGTATGGTGCAACAAGCTATACGAGCTTTTGAATTCGCTAGA AGTTATGAACCGGTTTGTAAATCAGCTACGGAACTTAGGTTGCTTGAGGTTTTGTTAGAT GCACTTTGTAAAGAAGGTCATGTTAGAGAAGCTTCAATGTATTTGGAGAGAATAGGAGGG ACGATGGATTCGAATTGGGTTCCTTCTGTTCGGATTTTCAACATTTTATTGAATGGATGG TTTCGTTCAAGAAAGCTAAAGCAGGCAGAGAAGTTATGGGAAGAGATGAAAGCGATGAAT GTGAAGCCGACTGTTGTTACTTACGGTACTCTTATCGAAGGGTATTGCAGGATGCGTCGT GTTCAGATTGCTATGGAGGTTCTTGAAGAAATGAAGATGGCAGAAATGGAGATTAATTTT ATGGTCTTTAATCCGATTATCGATGGTTTAGGAGAAGCGGGGCGGTTAAGTGAAGCTCTA GGTATGATGGAAAGGTTCTTCGTTTGTGAATCAGGTCCTACTATAGTGACTTATAATTCA CTAGTGAAGAATTTCTGCAAGGCTGGAGATCTTCCTGGTGCTAGCAAAATACTCAAGATG ATGATGACACGAGGTGTTGATCCTACCACGACTACATACAACCATTTCTTCAAGTATTTC TCAAAGCATAACAAAACGGAAGAGGGCATGAACTTATATTTCAAGTTGATTGAAGCTGGA CACAGTCCAGACCGGTTAACGTATCATTTGATCTTGAAAATGCTGTGTGAGGATGGGAAG CTGAGCTTGGCGATGCAAGTGAACAAGGAGATGAAAAACAGAGGAATCGATCCTGACTTA TTAACAACCACAATGCTTATACATTTGCTCTGCAGACTCGAGATGTTAGAAGAAGCCTTT GAAGAGTTTGACAACGCAGTGAGACGAGGGATTATTCCACAGTACATCACATTTAAGATG ATCGATAACGGGTTGAGATCGAAAGGGATGAGCGATATGGCGAAGAGACTATCCAGCCTA ATGTCGTCTCTTCCTCACTCGAAGAAGCTGCCAAATACATACAGAGAAGCAGTAGATGCA CCGCCTGATAAAGATAGAAGGAAGTCTATTTTGCATAGAGCAGAAGCCATGTCTGATGTG TTGAAAGGTTGCAGGAACCCGAGAAAACTCGTGAAGATGCGTGGATCGCACAAAAAAGCT GTTGGTGAAGACATAAACCTGATAGATGATATCAATGAACGAAATGGAGATGCAGGGGAT TTTGAGTGA

Peptide Sequence

PEP ID	AT5G11310.1
PEP Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr5:3606490-3608409 FORWARD LENGTH=602 \| 201606
Sequence	MNSLFTAFRRNLLLNPNPHRNFFLHRLLSSSRRSSPLIPVEPLIQRIQSPAVPDSTCTPP QQNTVSKTDLSTISNLLENTDVVPGSSLESALDETGIEPSVELVHALFDRLSSSPMLLHS VFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLI RRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGG TMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRR VQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNS LVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAG HSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAF EEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKRLSSLMSSLPHSKKLPNTYREAVDA PPDKDRRKSILHRAEAMSDVLKGCRNPRKLVKMRGSHKKAVGEDINLIDDINERNGDAGD FE

Transcript Sequence

Transcript ID	AT5G11310.1
Transcript Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr5:3606385-3608628 FORWARD LENGTH=2133 \| 201606
Sequence	TGTTGATCGATATTTTCAGTTAACAAACAAAAGCCCAAATGGCGCGTAATCGGAGTGTCC TAATTTTCTCGGCGGACACTTAATTCTAATAAACGGCGGCAGAAAATGAACTCTCTGTTC ACCGCCTTCCGCCGCAACCTCCTCTTAAACCCTAATCCTCACCGCAACTTCTTTCTTCAT AGATTGTTATCATCATCTCGCCGTTCATCCCCGCTCATTCCCGTCGAGCCTCTCATCCAA CGGATACAATCACCCGCCGTACCCGATTCTACATGTACTCCACCGCAACAAAACACCGTC TCGAAAACCGATCTCTCTACTATATCGAATCTTCTCGAGAACACTGATGTTGTTCCCGGT TCGAGTCTCGAGTCAGCTTTAGATGAAACCGGAATCGAACCGAGTGTTGAGTTGGTTCAC GCGTTGTTCGATCGGTTAAGTTCATCGCCGATGTTGCTTCACTCAGTGTTCAAATGGGCG GAGATGAAACCTGGGTTTACACTTTCTCCTTCACTTTTCGATTCTGTTGTCAATTCTCTA TGTAAAGCTCGTGAATTTGAAATTGCTTGGTCGTTGGTTTTTGATCGAGTGAGAAGCGAT GAAGGATCGAATTTGGTTTCTGCAGATACGTTCATCGTTTTGATCAGACGGTATGCTCGT GCTGGTATGGTGCAACAAGCTATACGAGCTTTTGAATTCGCTAGAAGTTATGAACCGGTT TGTAAATCAGCTACGGAACTTAGGTTGCTTGAGGTTTTGTTAGATGCACTTTGTAAAGAA GGTCATGTTAGAGAAGCTTCAATGTATTTGGAGAGAATAGGAGGGACGATGGATTCGAAT TGGGTTCCTTCTGTTCGGATTTTCAACATTTTATTGAATGGATGGTTTCGTTCAAGAAAG CTAAAGCAGGCAGAGAAGTTATGGGAAGAGATGAAAGCGATGAATGTGAAGCCGACTGTT GTTACTTACGGTACTCTTATCGAAGGGTATTGCAGGATGCGTCGTGTTCAGATTGCTATG GAGGTTCTTGAAGAAATGAAGATGGCAGAAATGGAGATTAATTTTATGGTCTTTAATCCG ATTATCGATGGTTTAGGAGAAGCGGGGCGGTTAAGTGAAGCTCTAGGTATGATGGAAAGG TTCTTCGTTTGTGAATCAGGTCCTACTATAGTGACTTATAATTCACTAGTGAAGAATTTC TGCAAGGCTGGAGATCTTCCTGGTGCTAGCAAAATACTCAAGATGATGATGACACGAGGT GTTGATCCTACCACGACTACATACAACCATTTCTTCAAGTATTTCTCAAAGCATAACAAA ACGGAAGAGGGCATGAACTTATATTTCAAGTTGATTGAAGCTGGACACAGTCCAGACCGG TTAACGTATCATTTGATCTTGAAAATGCTGTGTGAGGATGGGAAGCTGAGCTTGGCGATG CAAGTGAACAAGGAGATGAAAAACAGAGGAATCGATCCTGACTTATTAACAACCACAATG CTTATACATTTGCTCTGCAGACTCGAGATGTTAGAAGAAGCCTTTGAAGAGTTTGACAAC GCAGTGAGACGAGGGATTATTCCACAGTACATCACATTTAAGATGATCGATAACGGGTTG AGATCGAAAGGGATGAGCGATATGGCGAAGAGACTATCCAGCCTAATGTCGTCTCTTCCT CACTCGAAGAAGCTGCCAAATACATACAGAGAAGCAGTAGATGCACCGCCTGATAAAGAT AGAAGGAAGTCTATTTTGCATAGAGCAGAAGCCATGTCTGATGTGTTGAAAGGTTGCAGG AACCCGAGAAAACTCGTGAAGATGCGTGGATCGCACAAAAAAGCTGTTGGTGAAGACATA AACCTGATAGATGATATCAATGAACGAAATGGAGATGCAGGGGATTTTGAGTGAGAGCAC TCTCTTGTAAGTTGTAAACTTAAGGTTGGAAATAGGCTCGTAATGGGCCATTTAGTCCTA GACTTCAAGCCACAATTTTGATTCTAAGAACCCAAGCATCTTGATTTCTAGCGAGATACA AACATCTTGTTATCAAGGACATACAACCTGAAGCAAATGGGATTCAAAGAGAGAAAAAAA ATCAATTTTTTTAATAAACCAATTGATTTTACT