Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Arabidopsis thaliana ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT5G08540.1
CDS Infomation	\| ribosomal RNA small subunit methyltransferase J \| Chr5:2763914-2765431 FORWARD LENGTH=1041 \| 201606
Sequence	ATGACGTCTCTTCTCCTTCCTTCATCTCAATTTCTCCAGACTCGAACCCAAAACAATGGC CAACCATTCCTTCTCCCTCTAACACCACTGTTCGCACCACTACCTTCTCTCCGTCAGTTG AGACCGAAACACATCTCTATTTCCGCCGCAGCGCCGAAGAAAAAATCGGAGACTGTCACG GCGCCGACACCGGCAGCGAAGAAGAATTCGAGCGTGGAGGAGGAAACAGAAGAGGAAGTA GAGGAAGATATGCCGTGGATTCAAGAGAAGGCGTTAGACCTAGTCGAGTTCACTGGATCG GTGAGTCAGGCGATTCCTGGTCCTCGAGTTGGAAGTAGCAAATTGCCGTGGATGCTCGCC GTTCCGTTAGCTTACGCCGGCGTCACTTTCGTCACTGCTTTCGTCAAAACCGTTCAGAAG TTCTCTTCTCCTAAAGCTCAGCGCAAGAAACTGGTGAATCAGAATGCTATGCTTTGCAGA TCTATAGATGAGCTATTAAGGAAAGCTGGAACAGTGCATAGCTCTGAGCTTAAGGCACTT GAACAAAAGACAGAGTTTAACATGGAGGAGATATTGCGGAAATACATTCGTTATGCGTTG AATGAGAAACCGTTTAATCCCGACCTTGTTGCTGATCTCATTCATCTAAGAAAAGCTTCT GGTTTGAATGATTCTCAGATTCCTGAGATTTTAAATGAGATCTCTCGTCGTATTGTCAAG GAAAAAGGTCCGGTAGTGATGAAAATGCAAGGCTTTACCGAAAAAGGATTCAAGAGAAAA CTCGCCGTGCAAGCGCTTTTTGGAAAGATTTACTATCTTTCTGAGCTTCCTGACTTCTGC TCAAAAGACAACTCCTTAATCGTCAAGGAAATATTCGGCGTTACAGATGAAGACGCAGAG AAGCTGCGGATACACGCTCTTGCTGAAGCTGGAGACATAGAGGCACTTGAGAAAATGGTG GAATTTGAGAAAACTGCGGAGTCTTCTTCGGATAAAGAAGAAGATTCAAATGAAGAAGAT GACTCTAACACCACTTCCTAA

Peptide Sequence

PEP ID	AT5G08540.1
PEP Infomation	\| ribosomal RNA small subunit methyltransferase J \| Chr5:2763914-2765431 FORWARD LENGTH=346 \| 201606
Sequence	MTSLLLPSSQFLQTRTQNNGQPFLLPLTPLFAPLPSLRQLRPKHISISAAAPKKKSETVT APTPAAKKNSSVEEETEEEVEEDMPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLA VPLAYAGVTFVTAFVKTVQKFSSPKAQRKKLVNQNAMLCRSIDELLRKAGTVHSSELKAL EQKTEFNMEEILRKYIRYALNEKPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVK EKGPVVMKMQGFTEKGFKRKLAVQALFGKIYYLSELPDFCSKDNSLIVKEIFGVTDEDAE KLRIHALAEAGDIEALEKMVEFEKTAESSSDKEEDSNEEDDSNTTS

Transcript Sequence

Transcript ID	AT5G08540.1
Transcript Infomation	\| ribosomal RNA small subunit methyltransferase J \| Chr5:2763823-2765734 FORWARD LENGTH=1435 \| 201606
Sequence	CTTCACCTTCCGTCGTAGTTCCCCGACAAGCTAACTACTGTTGAGCCCCGCCGCATCCGA AGCCGACTTTTCAAATCGTCGAGCTTCAACAATGACGTCTCTTCTCCTTCCTTCATCTCA ATTTCTCCAGACTCGAACCCAAAACAATGGCCAACCATTCCTTCTCCCTCTAACACCACT GTTCGCACCACTACCTTCTCTCCGTCAGTTGAGACCGAAACACATCTCTATTTCCGCCGC AGCGCCGAAGAAAAAATCGGAGACTGTCACGGCGCCGACACCGGCAGCGAAGAAGAATTC GAGCGTGGAGGAGGAAACAGAAGAGGAAGTAGAGGAAGATATGCCGTGGATTCAAGAGAA GGCGTTAGACCTAGTCGAGTTCACTGGATCGGTGAGTCAGGCGATTCCTGGTCCTCGAGT TGGAAGTAGCAAATTGCCGTGGATGCTCGCCGTTCCGTTAGCTTACGCCGGCGTCACTTT CGTCACTGCTTTCGTCAAAACCGTTCAGAAGTTCTCTTCTCCTAAAGCTCAGCGCAAGAA ACTGGTGAATCAGAATGCTATGCTTTGCAGATCTATAGATGAGCTATTAAGGAAAGCTGG AACAGTGCATAGCTCTGAGCTTAAGGCACTTGAACAAAAGACAGAGTTTAACATGGAGGA GATATTGCGGAAATACATTCGTTATGCGTTGAATGAGAAACCGTTTAATCCCGACCTTGT TGCTGATCTCATTCATCTAAGAAAAGCTTCTGGTTTGAATGATTCTCAGATTCCTGAGAT TTTAAATGAGATCTCTCGTCGTATTGTCAAGGAAAAAGGTCCGGTAGTGATGAAAATGCA AGGCTTTACCGAAAAAGGATTCAAGAGAAAACTCGCCGTGCAAGCGCTTTTTGGAAAGAT TTACTATCTTTCTGAGCTTCCTGACTTCTGCTCAAAAGACAACTCCTTAATCGTCAAGGA AATATTCGGCGTTACAGATGAAGACGCAGAGAAGCTGCGGATACACGCTCTTGCTGAAGC TGGAGACATAGAGGCACTTGAGAAAATGGTGGAATTTGAGAAAACTGCGGAGTCTTCTTC GGATAAAGAAGAAGATTCAAATGAAGAAGATGACTCTAACACCACTTCCTAAGATGTTTG TTCAACGACCAACTTTCAACAGTAGATTCTTTCCAAAGGGGGTTTTCTTCTTCTGTTCTT TGACTTATACCCCAAGTTGTGTTGTTTACAGCAGAAGACGTCTGATTCCAACAGAAATTG TCTTTTGCAAAAAACCATGACACAGCTCGTAATACAAATTAACTGCATCTATAGTGCAGC ACAGCAATACAAGTTGGGGCTTATATTCATAGAAATAATATTGTCTTTGCTAAATCTAAA CTCATACAGATATAAAGGGAAAAATAAAAGACTCGAGATACTTTAGCTTATATTT