Gene sequences

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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT4G38440.1
CDS Infomation	\| RPAP1-like%2C carboxy-terminal protein \| Chr4:17989115-17994549 FORWARD LENGTH=4398 \| 201606
Sequence	ATGGAGCAAAGTAGCGGGAGAGTCAATCCGGAACAGCCGAACAACGTCTTGGCGAGCCTT GTCGGGAGCATCGTGGAGAAAGGAATATCGGAGAATAAGCCTCCAAGCAAGCCGCTTCCC CCAAGGCCCTCCCTTCTTTCCTTCCCCGTCGCTCGTCATCGTTCTCACGGACCCCATTTG GCTCCTGTGGGAAGCAGCATAGCACAACCTAAGGATTACAATGACGATCAGGAAGAAGAA GAAGCAGAAGAACGTTTCATGAATGCAGACTCCATTGCTGCTTTTGCTAAACCGCTTCAA AGAAAAGAGAAGAAAGACATGGACCTCGGGAGGTGGAAAGATATGGTCTCTGGGGATGAT CCTGCATCCACACATGTCCCTCAGCAATCAAGGAAACTTAAGATCATTGAAACGAGACCG CCCTATGTTGCTTCAGCCGATGCGGCCACTACATCCAGCAACACTTTACTGGCTGCCAGG GCATCAGACCAGAGAGAGTTTGTTTCTGATAAAGCACCGTTTATTAAAAATTTGGGAACC AAGGAAAGGGTTCCTTTAAACGCTTCTCCTCCCCTAGCTGTTTCGAATGGACTTGGGACT CGACACGCGTCTTCGTCTCTTGAAAGTGATATTGATGTTGAGAACCATGCAAAGTTGCAG ACAATGTCACCCGACGAGATTGCTGAGGCTCAGGCTGAGTTATTGGACAAGATGGATCCT GCACTACTCTCCATTTTGAAGAAACGAGGTGAGGCAAAATTGAAGAAGCGAAAGCATTCT GTGCAGGGGGTTTCCATCACCGATGAAACAGCAAAGAATTCAAGAACTGAGGGTCATTTT GTCACTCCTAAAGTGATGGCAATACCGAAAGAAAAAAGTGTGGTGCAAAAGCCAGGGATA GCCCAAGGATTCGTGTGGGATGCATGGACTGAGAGGGTTGAGGCAGCCAGAGACTTGAGA TTTTCTTTTGACGGGAATGTTGTTGAGGAAGATGTTGTCTCGCCAGCTGAAACTGGTGGA AAGTGGTCTGGTGTTGAATCTGCTGCCGAACGTGATTTCTTGAGAACCGAGGGGGATCCT GGGGCCGCAGGTTACACTATCAAAGAAGCTATTGCTCTTGCACGAAGTGTGATTCCCGGG CAGAGATGTCTTGCTTTGCATCTGCTTGCATCTGTACTCGACAAAGCTTTGAACAAACTT TGTCAAAGCAGAATAGGCTACGCAAGGGAAGAAAAAGATAAATCCACTGACTGGGAAGCC ATCTGGGCTTATGCCCTTGGACCGGAACCTGAGCTTGTCTTAGCATTGAGGATGGCTCTT GATGACAACCATGCCTCTGTTGTTATAGCATGTGTAAAAGTGATTCAGTGTCTACTGAGC TGTTCTCTTAACGAGAATTTCTTTAATATTCTGGAGAACATGGGACCACACGGGAAAGAT ATCTTCACGGCCTCGGTGTTCAGGAGTAAGCCGGAAATTGATCTTGGCTTCCTCCGTGGT TGCTACTGGAAGTACAGCGCTAAACCCTCCAATATTGTTGCGTTCCGTGAAGAAATCTTG GATGACGGGACAGAAGATACGGATACTATTCAGAAAGATGTTTTTGTAGCCGGACAAGAT GTTGCTGCTGGTCTCGTCAGAATGGATATCCTTCCAAGAATTTATCACCTTCTGGAGACA GAACCAACAGCAGCGCTTGAGGACAGCATAATCTCTGTTACTATTGCGATAGCAAGGCAT TCTCCAAAATGCACAACTGCAATCTTGAAGTATCCCAAATTTGTGCAAACAATTGTGAAA AGATTCCAATTGAACAAAAGAATGGACGTTCTTTCTTCTCAGATCAACTCTGTCCGCCTC TTAAAGGTGTTGGCCCGGTATGATCAAAGTACTTGCATGGAATTTGTGAAGAATGGGACT TTCAATGCGGTCACATGGCATTTGTTTCAGTTCACCTCATCTCTTGACTCATGGGTGAAG CTAGGGAAGCAGAACTGCAAGCTTTCATCTACCTTGATGGTTGAACAGCTCCGGTTTTGG AAGGTCTGTATCCATAGTGGCTGTTGCGTATCTCGCTTCCCAGAGCTATTCCCAGCTCTG TGTCTGTGGTTGAGTTGTCCATCATTCGAAAAGCTCAGGGAGAAAAATCTCATCAGCGAG TTTACTTCTGTGTCAAACGAGGCCTACCTGGTCCTTGAGGCTTTTGCCGAGACACTTCCT AATATGTACTCACAAAACATTCCACGGAATGAATCTGGGACATGGGACTGGAGCTATGTT AGCCCTATGATTGATTCAGCACTGAGTTGGATAACATTGGCCCCGCAATTACTCAAGTGG GAGAAAGGAATCGAAAGTGTCTCTGTATCAACTACTACTCTGTTGTGGTTGTATTCAGGT GTCATGCGTACAATTTCCAAAGTCCTTGAGAAAATCTCTGCGGAGGGAGAGGAAGAACCT CTACCATGGCTACCGGAGTTTGTTCCAAAGATTGGCCTTGCCATTATCAAGCACAAGCTT CTTAGTTTTTCTGTTGCAGACGTAAGTAGGTTTGGAAAAGACTCTTCCAGGTGTTCCTCT TTTATGGAGTATTTGTGTTTTCTAAGAGAACGATCTCAAGATGACGAACTAGCATTAGCT TCTGTGAATTGTCTTCATGGGTTAACACGGACTATCGTGTCCATCCAAAATCTGATAGAA TCTGCTAGATCCAAGATGAAAGCTCCGCATCAGGTAAGTATTTCCACTGGAGATGAATCT GTGCTTGCAAATGGGATACTGGCAGAGTCTCTGGCTGAGCTAACATCTGTGTCGTGCTCT TTTAGAGATTCTGTTTCATCAGAATGGCCCATCGTGCAATCAATTGAGCTACATAAACGA GGCGGATTGGCCCCCGGCGTTGGACTTGGTTGGGGAGCTAGCGGTGGTGGGTTTTGGTCA ACCAGAGTTCTGTTGGCACAGGCTGGTGCCGGTCTTCTGAGTCTCTTTCTTAACATCTCT CTGAGCGACTCGCAGAATGATCAGGGATCTGTTGGCTTTATGGATAAAGTAAACTCCGCT TTAGCTATGTGTTTGATTGCAGGTCCAAGGGATTATTTACTCGTGGAAAGAGCCTTTGAA TATGTCCTTAGACCGCATGCTTTAGAACACCTGGCCTGCTGTATCAAGTCAAACAAAAAA AACATATCGTTTGAATGGGAATGCAGCGAAGGGGACTATCATCGTATGAGCAGTATGCTT GCTTCTCACTTCAGACATAGATGGTTACAGCAAAAGGGAAGATCGATAGCCGAGGAAGGG GTCAGTGGGGTAAGGAAGGGCACAGTTGGTCTGGAGACTATTCATGAGGACGGTGAAATG TCAAATAGTTCAACTCAGGATAAAAAATCAGACTCCTCGACCATAGAGTGGGCTCACCAG AGAATGCCCCTACCTCCACACTGGTTTCTCAGCGCCATCTCAGCAGTCCACAGTGGTAAA ACCTCAACAGGGCCACCAGAATCCACAGAGTTGCTTGAAGTTGCAAAAGCTGGAGTTTTC TTTCTTGCAGGACTTGAGTCATCGTCTGGTTTTGGATCGCTTCCCTCTCCTGTTGTGAGT GTACCGTTGGTTTGGAAGTTTCACGCTTTGTCTACCGTATTGCTTGTTGGAATGGACATC ATCGAAGACAAGAACACTAGGAACTTGTACAATTATCTGCAGGAGCTTTATGGGCAGTTT CTTGATGAAGCGAGACTAAATCACCGTGACACTGAGCTTCTGAGGTTCAAGTCAGACATT CATGAGAACTACTCTACTTTTCTGGAGATGGTGGTGGAGCAGTATGCTGCGGTGTCATAT GGTGATGTAGTGTATGGCCGGCAGGTCTCGGTTTACCTGCATCAATGCGTGGAACACTCT GTTCGGCTTTCGGCATGGACAGTGCTCTCCAATGCCCGTGTTCTCGAGCTTCTGCCGAGT CTAGACAAGTGCTTGGGAGAAGCGGATGGTTACCTCGAACCTGTTGAGGAAAATGAGGCC GTCCTTGAGGCCTACCTGAAGTCATGGACTTGTGGGGCATTGGACAGAGCTGCGACGCGT GGATCAGTAGCCTATACGCTGGTTGTGCATCACTTTTCATCTTTAGTCTTTTGCAACCAA GCCAAGGATAAAGTATCCCTGCGGAATAAGATTGTCAAGACTCTTGTCAGGGATTTATCA AGAAAGCGGCATCGTGAGGGGATGATGTTAGATCTCCTGCGGTATAAGAAAGGGTCTGCG AACGCCATGGAAGAAGAAGTGATAGCAGCGGAGACAGAGAAAAGAATGGAGGTGTTGAAA GAGGGTTGCGAAGGGAACTCCACCCTCCTCTTGGAACTGGAGAAGCTGAAATCAGCCGCT CTCTGTGGAAGAAGGTGA

Peptide Sequence

PEP ID	AT4G38440.1
PEP Infomation	\| RPAP1-like%2C carboxy-terminal protein \| Chr4:17989115-17994549 FORWARD LENGTH=1465 \| 201606
Sequence	MEQSSGRVNPEQPNNVLASLVGSIVEKGISENKPPSKPLPPRPSLLSFPVARHRSHGPHL APVGSSIAQPKDYNDDQEEEEAEERFMNADSIAAFAKPLQRKEKKDMDLGRWKDMVSGDD PASTHVPQQSRKLKIIETRPPYVASADAATTSSNTLLAARASDQREFVSDKAPFIKNLGT KERVPLNASPPLAVSNGLGTRHASSSLESDIDVENHAKLQTMSPDEIAEAQAELLDKMDP ALLSILKKRGEAKLKKRKHSVQGVSITDETAKNSRTEGHFVTPKVMAIPKEKSVVQKPGI AQGFVWDAWTERVEAARDLRFSFDGNVVEEDVVSPAETGGKWSGVESAAERDFLRTEGDP GAAGYTIKEAIALARSVIPGQRCLALHLLASVLDKALNKLCQSRIGYAREEKDKSTDWEA IWAYALGPEPELVLALRMALDDNHASVVIACVKVIQCLLSCSLNENFFNILENMGPHGKD IFTASVFRSKPEIDLGFLRGCYWKYSAKPSNIVAFREEILDDGTEDTDTIQKDVFVAGQD VAAGLVRMDILPRIYHLLETEPTAALEDSIISVTIAIARHSPKCTTAILKYPKFVQTIVK RFQLNKRMDVLSSQINSVRLLKVLARYDQSTCMEFVKNGTFNAVTWHLFQFTSSLDSWVK LGKQNCKLSSTLMVEQLRFWKVCIHSGCCVSRFPELFPALCLWLSCPSFEKLREKNLISE FTSVSNEAYLVLEAFAETLPNMYSQNIPRNESGTWDWSYVSPMIDSALSWITLAPQLLKW EKGIESVSVSTTTLLWLYSGVMRTISKVLEKISAEGEEEPLPWLPEFVPKIGLAIIKHKL LSFSVADVSRFGKDSSRCSSFMEYLCFLRERSQDDELALASVNCLHGLTRTIVSIQNLIE SARSKMKAPHQVSISTGDESVLANGILAESLAELTSVSCSFRDSVSSEWPIVQSIELHKR GGLAPGVGLGWGASGGGFWSTRVLLAQAGAGLLSLFLNISLSDSQNDQGSVGFMDKVNSA LAMCLIAGPRDYLLVERAFEYVLRPHALEHLACCIKSNKKNISFEWECSEGDYHRMSSML ASHFRHRWLQQKGRSIAEEGVSGVRKGTVGLETIHEDGEMSNSSTQDKKSDSSTIEWAHQ RMPLPPHWFLSAISAVHSGKTSTGPPESTELLEVAKAGVFFLAGLESSSGFGSLPSPVVS VPLVWKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQFLDEARLNHRDTELLRFKSDI HENYSTFLEMVVEQYAAVSYGDVVYGRQVSVYLHQCVEHSVRLSAWTVLSNARVLELLPS LDKCLGEADGYLEPVEENEAVLEAYLKSWTCGALDRAATRGSVAYTLVVHHFSSLVFCNQ AKDKVSLRNKIVKTLVRDLSRKRHREGMMLDLLRYKKGSANAMEEEVIAAETEKRMEVLK EGCEGNSTLLLELEKLKSAALCGRR

Transcript Sequence

Transcript ID	AT4G38440.1
Transcript Infomation	\| RPAP1-like%2C carboxy-terminal protein \| Chr4:17989067-17994727 FORWARD LENGTH=4624 \| 201606
Sequence	AAAGAGTTTTCCGTTTTGCTGAGCGGAGGCGAGAGAGGGTTTAGAGTGATGGAGCAAAGT AGCGGGAGAGTCAATCCGGAACAGCCGAACAACGTCTTGGCGAGCCTTGTCGGGAGCATC GTGGAGAAAGGAATATCGGAGAATAAGCCTCCAAGCAAGCCGCTTCCCCCAAGGCCCTCC CTTCTTTCCTTCCCCGTCGCTCGTCATCGTTCTCACGGACCCCATTTGGCTCCTGTGGGA AGCAGCATAGCACAACCTAAGGATTACAATGACGATCAGGAAGAAGAAGAAGCAGAAGAA CGTTTCATGAATGCAGACTCCATTGCTGCTTTTGCTAAACCGCTTCAAAGAAAAGAGAAG AAAGACATGGACCTCGGGAGGTGGAAAGATATGGTCTCTGGGGATGATCCTGCATCCACA CATGTCCCTCAGCAATCAAGGAAACTTAAGATCATTGAAACGAGACCGCCCTATGTTGCT TCAGCCGATGCGGCCACTACATCCAGCAACACTTTACTGGCTGCCAGGGCATCAGACCAG AGAGAGTTTGTTTCTGATAAAGCACCGTTTATTAAAAATTTGGGAACCAAGGAAAGGGTT CCTTTAAACGCTTCTCCTCCCCTAGCTGTTTCGAATGGACTTGGGACTCGACACGCGTCT TCGTCTCTTGAAAGTGATATTGATGTTGAGAACCATGCAAAGTTGCAGACAATGTCACCC GACGAGATTGCTGAGGCTCAGGCTGAGTTATTGGACAAGATGGATCCTGCACTACTCTCC ATTTTGAAGAAACGAGGTGAGGCAAAATTGAAGAAGCGAAAGCATTCTGTGCAGGGGGTT TCCATCACCGATGAAACAGCAAAGAATTCAAGAACTGAGGGTCATTTTGTCACTCCTAAA GTGATGGCAATACCGAAAGAAAAAAGTGTGGTGCAAAAGCCAGGGATAGCCCAAGGATTC GTGTGGGATGCATGGACTGAGAGGGTTGAGGCAGCCAGAGACTTGAGATTTTCTTTTGAC GGGAATGTTGTTGAGGAAGATGTTGTCTCGCCAGCTGAAACTGGTGGAAAGTGGTCTGGT GTTGAATCTGCTGCCGAACGTGATTTCTTGAGAACCGAGGGGGATCCTGGGGCCGCAGGT TACACTATCAAAGAAGCTATTGCTCTTGCACGAAGTGTGATTCCCGGGCAGAGATGTCTT GCTTTGCATCTGCTTGCATCTGTACTCGACAAAGCTTTGAACAAACTTTGTCAAAGCAGA ATAGGCTACGCAAGGGAAGAAAAAGATAAATCCACTGACTGGGAAGCCATCTGGGCTTAT GCCCTTGGACCGGAACCTGAGCTTGTCTTAGCATTGAGGATGGCTCTTGATGACAACCAT GCCTCTGTTGTTATAGCATGTGTAAAAGTGATTCAGTGTCTACTGAGCTGTTCTCTTAAC GAGAATTTCTTTAATATTCTGGAGAACATGGGACCACACGGGAAAGATATCTTCACGGCC TCGGTGTTCAGGAGTAAGCCGGAAATTGATCTTGGCTTCCTCCGTGGTTGCTACTGGAAG TACAGCGCTAAACCCTCCAATATTGTTGCGTTCCGTGAAGAAATCTTGGATGACGGGACA GAAGATACGGATACTATTCAGAAAGATGTTTTTGTAGCCGGACAAGATGTTGCTGCTGGT CTCGTCAGAATGGATATCCTTCCAAGAATTTATCACCTTCTGGAGACAGAACCAACAGCA GCGCTTGAGGACAGCATAATCTCTGTTACTATTGCGATAGCAAGGCATTCTCCAAAATGC ACAACTGCAATCTTGAAGTATCCCAAATTTGTGCAAACAATTGTGAAAAGATTCCAATTG AACAAAAGAATGGACGTTCTTTCTTCTCAGATCAACTCTGTCCGCCTCTTAAAGGTGTTG GCCCGGTATGATCAAAGTACTTGCATGGAATTTGTGAAGAATGGGACTTTCAATGCGGTC ACATGGCATTTGTTTCAGTTCACCTCATCTCTTGACTCATGGGTGAAGCTAGGGAAGCAG AACTGCAAGCTTTCATCTACCTTGATGGTTGAACAGCTCCGGTTTTGGAAGGTCTGTATC CATAGTGGCTGTTGCGTATCTCGCTTCCCAGAGCTATTCCCAGCTCTGTGTCTGTGGTTG AGTTGTCCATCATTCGAAAAGCTCAGGGAGAAAAATCTCATCAGCGAGTTTACTTCTGTG TCAAACGAGGCCTACCTGGTCCTTGAGGCTTTTGCCGAGACACTTCCTAATATGTACTCA CAAAACATTCCACGGAATGAATCTGGGACATGGGACTGGAGCTATGTTAGCCCTATGATT GATTCAGCACTGAGTTGGATAACATTGGCCCCGCAATTACTCAAGTGGGAGAAAGGAATC GAAAGTGTCTCTGTATCAACTACTACTCTGTTGTGGTTGTATTCAGGTGTCATGCGTACA ATTTCCAAAGTCCTTGAGAAAATCTCTGCGGAGGGAGAGGAAGAACCTCTACCATGGCTA CCGGAGTTTGTTCCAAAGATTGGCCTTGCCATTATCAAGCACAAGCTTCTTAGTTTTTCT GTTGCAGACGTAAGTAGGTTTGGAAAAGACTCTTCCAGGTGTTCCTCTTTTATGGAGTAT TTGTGTTTTCTAAGAGAACGATCTCAAGATGACGAACTAGCATTAGCTTCTGTGAATTGT CTTCATGGGTTAACACGGACTATCGTGTCCATCCAAAATCTGATAGAATCTGCTAGATCC AAGATGAAAGCTCCGCATCAGGTAAGTATTTCCACTGGAGATGAATCTGTGCTTGCAAAT GGGATACTGGCAGAGTCTCTGGCTGAGCTAACATCTGTGTCGTGCTCTTTTAGAGATTCT GTTTCATCAGAATGGCCCATCGTGCAATCAATTGAGCTACATAAACGAGGCGGATTGGCC CCCGGCGTTGGACTTGGTTGGGGAGCTAGCGGTGGTGGGTTTTGGTCAACCAGAGTTCTG TTGGCACAGGCTGGTGCCGGTCTTCTGAGTCTCTTTCTTAACATCTCTCTGAGCGACTCG CAGAATGATCAGGGATCTGTTGGCTTTATGGATAAAGTAAACTCCGCTTTAGCTATGTGT TTGATTGCAGGTCCAAGGGATTATTTACTCGTGGAAAGAGCCTTTGAATATGTCCTTAGA CCGCATGCTTTAGAACACCTGGCCTGCTGTATCAAGTCAAACAAAAAAAACATATCGTTT GAATGGGAATGCAGCGAAGGGGACTATCATCGTATGAGCAGTATGCTTGCTTCTCACTTC AGACATAGATGGTTACAGCAAAAGGGAAGATCGATAGCCGAGGAAGGGGTCAGTGGGGTA AGGAAGGGCACAGTTGGTCTGGAGACTATTCATGAGGACGGTGAAATGTCAAATAGTTCA ACTCAGGATAAAAAATCAGACTCCTCGACCATAGAGTGGGCTCACCAGAGAATGCCCCTA CCTCCACACTGGTTTCTCAGCGCCATCTCAGCAGTCCACAGTGGTAAAACCTCAACAGGG CCACCAGAATCCACAGAGTTGCTTGAAGTTGCAAAAGCTGGAGTTTTCTTTCTTGCAGGA CTTGAGTCATCGTCTGGTTTTGGATCGCTTCCCTCTCCTGTTGTGAGTGTACCGTTGGTT TGGAAGTTTCACGCTTTGTCTACCGTATTGCTTGTTGGAATGGACATCATCGAAGACAAG AACACTAGGAACTTGTACAATTATCTGCAGGAGCTTTATGGGCAGTTTCTTGATGAAGCG AGACTAAATCACCGTGACACTGAGCTTCTGAGGTTCAAGTCAGACATTCATGAGAACTAC TCTACTTTTCTGGAGATGGTGGTGGAGCAGTATGCTGCGGTGTCATATGGTGATGTAGTG TATGGCCGGCAGGTCTCGGTTTACCTGCATCAATGCGTGGAACACTCTGTTCGGCTTTCG GCATGGACAGTGCTCTCCAATGCCCGTGTTCTCGAGCTTCTGCCGAGTCTAGACAAGTGC TTGGGAGAAGCGGATGGTTACCTCGAACCTGTTGAGGAAAATGAGGCCGTCCTTGAGGCC TACCTGAAGTCATGGACTTGTGGGGCATTGGACAGAGCTGCGACGCGTGGATCAGTAGCC TATACGCTGGTTGTGCATCACTTTTCATCTTTAGTCTTTTGCAACCAAGCCAAGGATAAA GTATCCCTGCGGAATAAGATTGTCAAGACTCTTGTCAGGGATTTATCAAGAAAGCGGCAT CGTGAGGGGATGATGTTAGATCTCCTGCGGTATAAGAAAGGGTCTGCGAACGCCATGGAA GAAGAAGTGATAGCAGCGGAGACAGAGAAAAGAATGGAGGTGTTGAAAGAGGGTTGCGAA GGGAACTCCACCCTCCTCTTGGAACTGGAGAAGCTGAAATCAGCCGCTCTCTGTGGAAGA AGGTGAACGAGAGAATGAGAGGAAAGAAAGTCTGTGTGTTTCTTTCTCTGTTTTGAGGTT CTCTTACAGATGAAAAGCTGTGTAATTAAAAATCGATGTTCTTCTTCTGTTCTTGTAAGA TTTTGGATTTTTCCAATTTCTGACAAAGTTCAATTAAAAAACTTGACTGACATTTTGAAA GCGA