Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT4G18350.1
CDS Infomation

| nine-cis-epoxycarotenoid dioxygenase 2 | Chr4:10142672-10144423 FORWARD LENGTH=1752 | 201606
Sequence

ATGGTTTCTCTTCTTACAATGCCGATGAGTGGTGGTATTAAAACATGGCCTCAAGCCCAA
ATTGATTTGGGTTTTAGGCCCATTAAAAGACAACCGAAGGTTATTAAATGCACGGTGCAG
ATCGACGTAACGGAATTAACCAAAAAACGCCAATTATTTACACCCAGAACCACCGCTACT
CCGCCGCAGCATAATCCTCTCCGGCTAAACATCTTCCAGAAAGCGGCGGCGATTGCGATC
GACGCGGCTGAGCGTGCATTAATCTCACACGAGCAAGATTCTCCACTTCCCAAAACCGCT
GATCCACGTGTTCAGATTGCCGGGAATTATTCCCCGGTACCGGAATCTTCCGTCCGGCGA
AACCTCACCGTCGAAGGAACAATCCCTGACTGCATTGACGGTGTTTATATCCGTAACGGC
GCGAATCCGATGTTTGAGCCAACAGCTGGGCACCATTTATTCGACGGAGACGGAATGGTT
CACGCAGTTAAAATAACCAACGGTTCAGCTAGCTACGCATGCCGGTTTACAAAAACCGAG
AGATTGGTTCAGGAAAAACGATTGGGTCGACCAGTTTTCCCGAAAGCAATCGGCGAGCTT
CACGGTCACTCGGGAATCGCACGTTTGATGCTGTTTTACGCACGTGGGCTTTGTGGTCTG
ATCAACAACCAAAACGGCGTCGGAGTAGCAAACGCCGGTTTGGTTTACTTTAATAACCGG
CTTTTAGCTATGTCAGAAGACGATTTACCGTACCAATTAAAAATTACTCAAACCGGCGAT
CTCCAAACCGTTGGACGTTACGATTTCGACGGTCAGTTAAAATCCGCAATGATAGCTCAC
CCGAAACTGGACCCGGTTACGAAGGAGCTTCACGCGTTAAGCTACGACGTCGTTAAGAAA
CCTTACCTGAAATACTTCAGATTCTCGCCAGACGGCGTTAAATCGCCGGAATTGGAGATC
CCGCTCGAAACTCCGACGATGATTCACGATTTCGCTATAACGGAGAATTTTGTGGTGATT
CCTGATCAACAAGTCGTGTTCAAGCTCGGCGAGATGATTTCCGGTAAATCTCCGGTTGTT
TTCGACGGAGAAAAGGTTTCCCGATTGGGGATAATGCCCAAGGACGCGACAGAAGCTTCT
CAGATAATCTGGGTGAACTCTCCGGAGACGTTCTGTTTTCATCTCTGGAATGCATGGGAA
TCGCCGGAGACGGAGGAGATTGTGGTGATCGGATCGTGTATGTCGCCGGCGGATTCAATC
TTCAACGAGAGAGACGAGAGCTTGAGAAGCGTTTTGTCGGAGATCAGGATAAACCTCAGA
ACACGTAAAACCACGCGTCGTTCGTTGTTGGTTAACGAGGATGTAAATTTAGAGATTGGT
ATGGTTAACCGGAACCGGTTAGGAAGAAAAACCCGGTTCGCGTTTTTGGCTATTGCTTAT
CCTTGGCCAAAAGTTTCCGGTTTCGCTAAGGTCGATCTTTGCACCGGTGAGATGAAAAAA
TATATTTACGGCGGTGAGAAATATGGCGGCGAACCGTTTTTCTTGCCCGGCAACTCCGGT
AACGGCGAAGAAAATGAAGATGACGGTTATATATTTTGTCACGTTCATGACGAAGAAACA
AAGACATCAGAGCTTCAGATTATTAACGCTGTTAATTTAAAGCTTGAAGCTACGATTAAA
CTACCGTCTAGAGTACCGTATGGGTTTCATGGCACATTTGTGGATTCGAATGAACTCGTT
GATCAATTATAA

Peptide Sequence

PEP ID

AT4G18350.1
PEP Infomation

| nine-cis-epoxycarotenoid dioxygenase 2 | Chr4:10142672-10144423 FORWARD LENGTH=583 | 201606
Sequence

MVSLLTMPMSGGIKTWPQAQIDLGFRPIKRQPKVIKCTVQIDVTELTKKRQLFTPRTTAT
PPQHNPLRLNIFQKAAAIAIDAAERALISHEQDSPLPKTADPRVQIAGNYSPVPESSVRR
NLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTE
RLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNR
LLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLKSAMIAHPKLDPVTKELHALSYDVVKK
PYLKYFRFSPDGVKSPELEIPLETPTMIHDFAITENFVVIPDQQVVFKLGEMISGKSPVV
FDGEKVSRLGIMPKDATEASQIIWVNSPETFCFHLWNAWESPETEEIVVIGSCMSPADSI
FNERDESLRSVLSEIRINLRTRKTTRRSLLVNEDVNLEIGMVNRNRLGRKTRFAFLAIAY
PWPKVSGFAKVDLCTGEMKKYIYGGEKYGGEPFFLPGNSGNGEENEDDGYIFCHVHDEET
KTSELQIINAVNLKLEATIKLPSRVPYGFHGTFVDSNELVDQL

Transcript Sequence

Transcript ID

AT4G18350.1
Transcript Infomation

| nine-cis-epoxycarotenoid dioxygenase 2 | Chr4:10142255-10144646 FORWARD LENGTH=2392 | 201606
Sequence

CTTTCGCTTACTTTAAAATGTTGAAGCTATAAAATTTTACATATTTGAAAAATGAGTTAT
TAGTATTTCATCAACAAAATGCATTCTACTGTATATTGGATTCCAACGCAAACAATAACA
TAGCTACAAAGCTATCACAAAGCACTATCATTAGTTTATTACACTAAAATTTCGAATATT
TTCATGTACGACTTCAAATATTTTTCATTTTCTGCCGCATTCTCATGTCATTAGTCATCA
TTACTCCCTCTCTCGCGTACCCAACTCTATATAAGATTTCTCCTTCTTCTTTTTCTCTTC
TCATCGAACTTTCCTCTTTCTTCTCTCATCTCCTCTCTTTCACTCTTCACACCAGAAGAT
ACAAAAAACAATCACTGTCTCAAGCCTCTCTATACCGAAGATAAGAAAACAAAAGCCATG
GTTTCTCTTCTTACAATGCCGATGAGTGGTGGTATTAAAACATGGCCTCAAGCCCAAATT
GATTTGGGTTTTAGGCCCATTAAAAGACAACCGAAGGTTATTAAATGCACGGTGCAGATC
GACGTAACGGAATTAACCAAAAAACGCCAATTATTTACACCCAGAACCACCGCTACTCCG
CCGCAGCATAATCCTCTCCGGCTAAACATCTTCCAGAAAGCGGCGGCGATTGCGATCGAC
GCGGCTGAGCGTGCATTAATCTCACACGAGCAAGATTCTCCACTTCCCAAAACCGCTGAT
CCACGTGTTCAGATTGCCGGGAATTATTCCCCGGTACCGGAATCTTCCGTCCGGCGAAAC
CTCACCGTCGAAGGAACAATCCCTGACTGCATTGACGGTGTTTATATCCGTAACGGCGCG
AATCCGATGTTTGAGCCAACAGCTGGGCACCATTTATTCGACGGAGACGGAATGGTTCAC
GCAGTTAAAATAACCAACGGTTCAGCTAGCTACGCATGCCGGTTTACAAAAACCGAGAGA
TTGGTTCAGGAAAAACGATTGGGTCGACCAGTTTTCCCGAAAGCAATCGGCGAGCTTCAC
GGTCACTCGGGAATCGCACGTTTGATGCTGTTTTACGCACGTGGGCTTTGTGGTCTGATC
AACAACCAAAACGGCGTCGGAGTAGCAAACGCCGGTTTGGTTTACTTTAATAACCGGCTT
TTAGCTATGTCAGAAGACGATTTACCGTACCAATTAAAAATTACTCAAACCGGCGATCTC
CAAACCGTTGGACGTTACGATTTCGACGGTCAGTTAAAATCCGCAATGATAGCTCACCCG
AAACTGGACCCGGTTACGAAGGAGCTTCACGCGTTAAGCTACGACGTCGTTAAGAAACCT
TACCTGAAATACTTCAGATTCTCGCCAGACGGCGTTAAATCGCCGGAATTGGAGATCCCG
CTCGAAACTCCGACGATGATTCACGATTTCGCTATAACGGAGAATTTTGTGGTGATTCCT
GATCAACAAGTCGTGTTCAAGCTCGGCGAGATGATTTCCGGTAAATCTCCGGTTGTTTTC
GACGGAGAAAAGGTTTCCCGATTGGGGATAATGCCCAAGGACGCGACAGAAGCTTCTCAG
ATAATCTGGGTGAACTCTCCGGAGACGTTCTGTTTTCATCTCTGGAATGCATGGGAATCG
CCGGAGACGGAGGAGATTGTGGTGATCGGATCGTGTATGTCGCCGGCGGATTCAATCTTC
AACGAGAGAGACGAGAGCTTGAGAAGCGTTTTGTCGGAGATCAGGATAAACCTCAGAACA
CGTAAAACCACGCGTCGTTCGTTGTTGGTTAACGAGGATGTAAATTTAGAGATTGGTATG
GTTAACCGGAACCGGTTAGGAAGAAAAACCCGGTTCGCGTTTTTGGCTATTGCTTATCCT
TGGCCAAAAGTTTCCGGTTTCGCTAAGGTCGATCTTTGCACCGGTGAGATGAAAAAATAT
ATTTACGGCGGTGAGAAATATGGCGGCGAACCGTTTTTCTTGCCCGGCAACTCCGGTAAC
GGCGAAGAAAATGAAGATGACGGTTATATATTTTGTCACGTTCATGACGAAGAAACAAAG
ACATCAGAGCTTCAGATTATTAACGCTGTTAATTTAAAGCTTGAAGCTACGATTAAACTA
CCGTCTAGAGTACCGTATGGGTTTCATGGCACATTTGTGGATTCGAATGAACTCGTTGAT
CAATTATAATAATTATTGTACTTTTTAATGATTTGATAAATTTAGAAAAATAGATAGGTT
TACAAAGTTGCGATTGTTTTAACGATTAATGAAGAATGGTTAGATACTTGGATTATAATT
TCGCTTTCTTTGGACGTTCATGGTTGAAAGACATATCATAACACATAGCTCGGAAATAAC
ATTTGTATGCAAATTCCAATCCATAATCTCCCTCAGAATCCGTATAAAAAAA