Gene sequences

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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT4G16250.1
CDS Infomation	\| phytochrome D \| Chr4:9195602-9199486 REVERSE LENGTH=3495 \| 201606
Sequence	ATGGTCTCCGGAGGTGGTAGCAAAACCAGCGGTGGAGAGGCAGCTTCCTCAGGCCATCGC CGAAGTCGTCACACCAGCGCTGCAGAACAAGCTCAGTCGTCAGCAAACAAAGCCCTAAGG TCACAGAATCAGCAGCCACAAAACCACGGTGGCGGAACAGAGTCCACAAACAAAGCTATT CAACAGTACACTGTCGACGCGAGACTCCACGCCGTCTTCGAACAATCCGGAGAGTCAGGT AAGTCGTTTGATTACTCACAGTCTCTTAAAACGGCGCCGTACGATTCCTCCGTACCAGAG CAGCAGATCACAGCTTATCTCTCCCGGATCCAACGCGGTGGCTATACCCAGCCTTTTGGC TGCTTGATCGCCGTCGAAGAATCCACTTTCACAATCATCGGTTACAGTGAAAATGCGCGG GAAATGCTAGGGCTCATGTCTCAATCTGTACCAAGCATCGAGGACAAATCAGAGGTTTTA ACGATTGGTACGGATTTGCGATCTCTCTTCAAGTCATCGAGCTACCTTCTCCTCGAGCGC GCGTTCGTGGCTCGAGAGATCACGCTTCTGAATCCTATTTGGATTCACTCTAACAACACT GGTAAACCTTTCTACGCGATTCTCCACAGGGTTGATGTTGGAATTTTGATCGATTTAGAG CCGGCTCGAACCGAAGATCCGGCACTTTCAATCGCCGGAGCAGTCCAATCGCAGAAACTT GCGGTACGTGCGATTTCTCATTTACAATCGTTGCCTAGCGGCGACATTAAGCTTCTATGT GACACTGTTGTGGAAAGCGTTAGAGATCTTACTGGCTACGACCGCGTTATGGTGTACAAG TTTCATGAAGATGAACATGGTGAAGTCGTAGCCGAGAGTAAACGGAACGATTTAGAGCCT TACATTGGTCTGCATTATCCCGCTACTGATATTCCTCAGGCATCTCGGTTCTTGTTCAAG CAAAACCGTGTTAGGATGATAGTAGATTGCTATGCGTCACCGGTTCGTGTGGTTCAAGAC GATAGGCTCACGCAGTTTATATGCTTGGTGGGTTCGACTTTGCGAGCTCCTCATGGCTGT CATGCTCAATACATGACTAACATGGGCTCTATTGCGTCGTTAGCTATGGCAGTTATAATA AATGGAAACGAAGAAGATGGTAATGGGGTTAATACTGGAGGAAGAAACTCGATGAGGCTT TGGGGTTTAGTTGTTTGCCATCACACATCAGCTCGTTGCATACCTTTTCCTTTGAGGTAC GCTTGTGAGTTTCTTATGCAGGCCTTTGGCTTACAGCTAAACATGGAGTTGCAGTTAGCC TTGCAGGTGTCTGAAAAACGCGTTCTGAGAATGCAGACACTATTATGTGATATGCTTCTA CGTGACTCACCAGCGGGGATTGTCACGCAGAGGCCTAGTATCATGGATTTAGTAAAATGT AATGGTGCGGCATTTCTTTACCAAGGGAAGTATTATCCGTTGGGTGTGACTCCAACTGAT TCTCAGATTAATGACATTGTGGAGTGGTTGGTTGCTAACCATTCTGATTCTACCGGGTTA AGCACAGATAGTTTAGGCGATGCGGGTTATCCTCGGGCAGCTGCTTTGGGAGATGCTGTG TGCGGTATGGCAGTCGCGTGTATCACAAAAAGGGACTTCCTTTTCTGGTTTCGGTCTCAT ACTGAGAAAGAAATCAAATGGGGAGGGGCTAAGCACCATCCTGAGGACAAAGATGATGGT CAGCGGATGAATCCGCGTTCTTCGTTCCAGACTTTTCTCGAAGTTGTTAAGAGCCGATGT CAGCCATGGGAAACTGCTGAAATGGACGCCATTCACTCGCTCCAGCTTATTCTAAGAGAC TCTTTCAAAGAGTCTGAAGCGATGGACTCTAAAGCTGCTGCAGCTGGGGCGGTTCAGCCA CATGGAGATGATATGGTACAGCAAGGGATGCAGGAGATAGGTGCAGTTGCAAGAGAGATG GTTAGGCTCATTGAGACTGCGACGGTTCCTATATTTGCTGTGGACATAGACGGTTGCATC AATGGGTGGAACGCCAAGATCGCAGAGCTGACCGGTCTTTCTGTTGAAGACGCTATGGGA AAGTCGCTGGTTCGCGAATTGATATACAAAGAGTACAAAGAAACAGTTGATAGGCTTCTT TCTTGTGCTCTCAAAGGGGATGAAGGCAAGAATGTGGAGGTCAAGCTGAAAACTTTTGGT TCCGAGCTACAAGGAAAAGCAATGTTTGTGGTTGTCAACGCATGTTCAAGCAAGGACTAC TTAAACAACATCGTTGGAGTCTGCTTTGTTGGACAAGATGTAACTGGTCATAAAATTGTT ATGGACAAGTTCATCAACATACAAGGTGATTACAAGGCCATCATCCATAGCCCGAACCCT CTGATCCCTCCAATCTTTGCAGCGGATGAGAATACGTGCTGCCTTGAGTGGAACACTGCA ATGGAAAAGCTCACAGGCTGGCCTCGCAGCGAAGTGATTGGAAAATTACTTGTTAGGGAA GTATTTGGGAGCTATTGCAGACTAAAGGGTCCTGATGCGTTAACTAAGTTCATGATCGTC TTGCATAACGCGATCGGTGGCCAAGATACTGATAAATTCCCATTCCCGTTCTTTGATCGC AAAGGGGAATTCATTCAGGCTCTCCTGACTTTGAACAAACGGGTCAGCATCGATGGCAAA ATCATTGGGGCTTTCTGTTTTTTGCAGATACCGAGTCCCGAGCTGCAGCAAGCTCTAGAA GTTCAGAGGAGGCAGGAGAGTGAATATTTCTCAAGGAGGAAAGAGTTGGCTTACATTTTC CAAGTTATAAAGAATCCATTGAGTGGATTGCGTTTCACAAATTCATTGCTGGAAGACATG GATTTAAACGAGGATCAGAAGCAGCTTCTTGAAACGAGTGTTTCATGTGAGAAGCAGATC TCAAAGATTGTAGGAGACATGGACGTCAAAAGCATAGATGACGGTTCATTTCTGCTAGAG AGAACAGAGTTCTTCATTGGCAATGTCACAAATGCAGTGGTAAGCCAAGTCATGTTGGTG GTGAGAGAGAGAAATCTCCAGCTGATCCGTAACATTCCCACGGAGGTCAAATCCATGGCT GTCTACGGTGACCAGATAAGGCTCCAACAGGTTCTCGCAGAATTTCTGCTAAGTATTGTC CGTTATGCACCCATGGAAGGCTCGGTAGAGCTCCATCTATGCCCGACTCTGAACCAAATG GCTGACGGATTCTCCGCTGTACGTTTGGAGTTCAGAATGGCGTGTGCAGGGGAAGGTGTG CCGCCAGAGAAAGTGCAAGACATGTTCCATAGTAGCCGATGGACAAGTCCAGAAGGATTA GGACTAAGCGTTTGCAGAAAGATTTTGAAGCTGATGAACGGAGGGGTTCAGTACATAAGA GAATTCGAACGCTCTTATTTCCTAATCGTTATCGAACTCCCGGTTCCTCTAATGATGATG ATGCCCTCTTCATGA

Peptide Sequence

PEP ID	AT4G16250.1
PEP Infomation	\| phytochrome D \| Chr4:9195602-9199486 REVERSE LENGTH=1164 \| 201606
Sequence	MVSGGGSKTSGGEAASSGHRRSRHTSAAEQAQSSANKALRSQNQQPQNHGGGTESTNKAI QQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPFG CLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLER AFVAREITLLNPIWIHSNNTGKPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQSQKL AVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRNDLEP YIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQFICLVGSTLRAPHGC HAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFPLRY ACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDLVKC NGAAFLYQGKYYPLGVTPTDSQINDIVEWLVANHSDSTGLSTDSLGDAGYPRAAALGDAV CGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQTFLEVVKSRC QPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVAREM VRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVDRLL SCALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGHKIV MDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLLVRE VFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSIDGK IIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLLEDM DLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQVMLV VRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPMEGSVELHLCPTLNQM ADGFSAVRLEFRMACAGEGVPPEKVQDMFHSSRWTSPEGLGLSVCRKILKLMNGGVQYIR EFERSYFLIVIELPVPLMMMMPSS

Transcript Sequence

Transcript ID	AT4G16250.1
Transcript Infomation	\| phytochrome D \| Chr4:9195247-9199840 REVERSE LENGTH=4204 \| 201606
Sequence	AAGTTTTTGGAACTTTTAACGAAATTTTAATAGACGAGGGAGTCAAATCATAAAGAGAAC AAGGTCATCGTCTTCTTTAATCCTTGAGTTCACCACCTCTTCTGCTTCATTTTAATTGGT TTTTGAGAGCCTTAAGAAAAATTCAAATTGGTTTCTGTTTTATCATTTTACAAACTTCGC CGTTAAGCTAGCGACGGTGATAATTCAAGCTTCCCAAAAATCCTTATGAGTATCATTTTT GAGCTCTTACAGTGAAGATTTGTGAAAGTGTGGTTTCGAATCCAATGATTGAAGAAGATT TTCTTCGTCTCTCGCACTAATTCTTTGAAATTCCAAAACCATTAACTGAGAAAAATGGTC TCCGGAGGTGGTAGCAAAACCAGCGGTGGAGAGGCAGCTTCCTCAGGCCATCGCCGAAGT CGTCACACCAGCGCTGCAGAACAAGCTCAGTCGTCAGCAAACAAAGCCCTAAGGTCACAG AATCAGCAGCCACAAAACCACGGTGGCGGAACAGAGTCCACAAACAAAGCTATTCAACAG TACACTGTCGACGCGAGACTCCACGCCGTCTTCGAACAATCCGGAGAGTCAGGTAAGTCG TTTGATTACTCACAGTCTCTTAAAACGGCGCCGTACGATTCCTCCGTACCAGAGCAGCAG ATCACAGCTTATCTCTCCCGGATCCAACGCGGTGGCTATACCCAGCCTTTTGGCTGCTTG ATCGCCGTCGAAGAATCCACTTTCACAATCATCGGTTACAGTGAAAATGCGCGGGAAATG CTAGGGCTCATGTCTCAATCTGTACCAAGCATCGAGGACAAATCAGAGGTTTTAACGATT GGTACGGATTTGCGATCTCTCTTCAAGTCATCGAGCTACCTTCTCCTCGAGCGCGCGTTC GTGGCTCGAGAGATCACGCTTCTGAATCCTATTTGGATTCACTCTAACAACACTGGTAAA CCTTTCTACGCGATTCTCCACAGGGTTGATGTTGGAATTTTGATCGATTTAGAGCCGGCT CGAACCGAAGATCCGGCACTTTCAATCGCCGGAGCAGTCCAATCGCAGAAACTTGCGGTA CGTGCGATTTCTCATTTACAATCGTTGCCTAGCGGCGACATTAAGCTTCTATGTGACACT GTTGTGGAAAGCGTTAGAGATCTTACTGGCTACGACCGCGTTATGGTGTACAAGTTTCAT GAAGATGAACATGGTGAAGTCGTAGCCGAGAGTAAACGGAACGATTTAGAGCCTTACATT GGTCTGCATTATCCCGCTACTGATATTCCTCAGGCATCTCGGTTCTTGTTCAAGCAAAAC CGTGTTAGGATGATAGTAGATTGCTATGCGTCACCGGTTCGTGTGGTTCAAGACGATAGG CTCACGCAGTTTATATGCTTGGTGGGTTCGACTTTGCGAGCTCCTCATGGCTGTCATGCT CAATACATGACTAACATGGGCTCTATTGCGTCGTTAGCTATGGCAGTTATAATAAATGGA AACGAAGAAGATGGTAATGGGGTTAATACTGGAGGAAGAAACTCGATGAGGCTTTGGGGT TTAGTTGTTTGCCATCACACATCAGCTCGTTGCATACCTTTTCCTTTGAGGTACGCTTGT GAGTTTCTTATGCAGGCCTTTGGCTTACAGCTAAACATGGAGTTGCAGTTAGCCTTGCAG GTGTCTGAAAAACGCGTTCTGAGAATGCAGACACTATTATGTGATATGCTTCTACGTGAC TCACCAGCGGGGATTGTCACGCAGAGGCCTAGTATCATGGATTTAGTAAAATGTAATGGT GCGGCATTTCTTTACCAAGGGAAGTATTATCCGTTGGGTGTGACTCCAACTGATTCTCAG ATTAATGACATTGTGGAGTGGTTGGTTGCTAACCATTCTGATTCTACCGGGTTAAGCACA GATAGTTTAGGCGATGCGGGTTATCCTCGGGCAGCTGCTTTGGGAGATGCTGTGTGCGGT ATGGCAGTCGCGTGTATCACAAAAAGGGACTTCCTTTTCTGGTTTCGGTCTCATACTGAG AAAGAAATCAAATGGGGAGGGGCTAAGCACCATCCTGAGGACAAAGATGATGGTCAGCGG ATGAATCCGCGTTCTTCGTTCCAGACTTTTCTCGAAGTTGTTAAGAGCCGATGTCAGCCA TGGGAAACTGCTGAAATGGACGCCATTCACTCGCTCCAGCTTATTCTAAGAGACTCTTTC AAAGAGTCTGAAGCGATGGACTCTAAAGCTGCTGCAGCTGGGGCGGTTCAGCCACATGGA GATGATATGGTACAGCAAGGGATGCAGGAGATAGGTGCAGTTGCAAGAGAGATGGTTAGG CTCATTGAGACTGCGACGGTTCCTATATTTGCTGTGGACATAGACGGTTGCATCAATGGG TGGAACGCCAAGATCGCAGAGCTGACCGGTCTTTCTGTTGAAGACGCTATGGGAAAGTCG CTGGTTCGCGAATTGATATACAAAGAGTACAAAGAAACAGTTGATAGGCTTCTTTCTTGT GCTCTCAAAGGGGATGAAGGCAAGAATGTGGAGGTCAAGCTGAAAACTTTTGGTTCCGAG CTACAAGGAAAAGCAATGTTTGTGGTTGTCAACGCATGTTCAAGCAAGGACTACTTAAAC AACATCGTTGGAGTCTGCTTTGTTGGACAAGATGTAACTGGTCATAAAATTGTTATGGAC AAGTTCATCAACATACAAGGTGATTACAAGGCCATCATCCATAGCCCGAACCCTCTGATC CCTCCAATCTTTGCAGCGGATGAGAATACGTGCTGCCTTGAGTGGAACACTGCAATGGAA AAGCTCACAGGCTGGCCTCGCAGCGAAGTGATTGGAAAATTACTTGTTAGGGAAGTATTT GGGAGCTATTGCAGACTAAAGGGTCCTGATGCGTTAACTAAGTTCATGATCGTCTTGCAT AACGCGATCGGTGGCCAAGATACTGATAAATTCCCATTCCCGTTCTTTGATCGCAAAGGG GAATTCATTCAGGCTCTCCTGACTTTGAACAAACGGGTCAGCATCGATGGCAAAATCATT GGGGCTTTCTGTTTTTTGCAGATACCGAGTCCCGAGCTGCAGCAAGCTCTAGAAGTTCAG AGGAGGCAGGAGAGTGAATATTTCTCAAGGAGGAAAGAGTTGGCTTACATTTTCCAAGTT ATAAAGAATCCATTGAGTGGATTGCGTTTCACAAATTCATTGCTGGAAGACATGGATTTA AACGAGGATCAGAAGCAGCTTCTTGAAACGAGTGTTTCATGTGAGAAGCAGATCTCAAAG ATTGTAGGAGACATGGACGTCAAAAGCATAGATGACGGTTCATTTCTGCTAGAGAGAACA GAGTTCTTCATTGGCAATGTCACAAATGCAGTGGTAAGCCAAGTCATGTTGGTGGTGAGA GAGAGAAATCTCCAGCTGATCCGTAACATTCCCACGGAGGTCAAATCCATGGCTGTCTAC GGTGACCAGATAAGGCTCCAACAGGTTCTCGCAGAATTTCTGCTAAGTATTGTCCGTTAT GCACCCATGGAAGGCTCGGTAGAGCTCCATCTATGCCCGACTCTGAACCAAATGGCTGAC GGATTCTCCGCTGTACGTTTGGAGTTCAGAATGGCGTGTGCAGGGGAAGGTGTGCCGCCA GAGAAAGTGCAAGACATGTTCCATAGTAGCCGATGGACAAGTCCAGAAGGATTAGGACTA AGCGTTTGCAGAAAGATTTTGAAGCTGATGAACGGAGGGGTTCAGTACATAAGAGAATTC GAACGCTCTTATTTCCTAATCGTTATCGAACTCCCGGTTCCTCTAATGATGATGATGCCC TCTTCATGAGTGGCATTGAATGTTTTGATTTTGGTCCGGGTAGGTTTAGAAGGAAGTACT TTTGCTACGGGGTACATGTAAGAGTAGTAGTTATAGTTGGGAACTTTTTTGGTTGATTCC CTTACGCTGTGTATATTATTATAGTCTCAGACTCTCAGTCATAGAATGTGAGAGTAGTTG TTTGTGATAATGTAATATCTTTCCTCTGCGTATAGCTGGTTCGTGAGGCTTCTAAAACAC AAGATCATGACGAAGATAAAATGTGGAAGTCTGATTTCGATTATGTAGAAAACATTGGAG CGTTAGAGATACTAAAATAAAAAAACAAAACTGATATCAATGAATCAAATTTATGCATGC AGAT