Gene sequences

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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT3G54980.1
CDS Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr3:20370293-20372848 FORWARD LENGTH=2556 \| 201606
Sequence	ATGAGATCTTTATTGGTTTTTAGAAAAATCCCTTCACGGATTCGTCTTCGTAACTTGAGA AACAATAAACCCTTTTGTTCACAGTCTCAGTTTCCCAAAGAATCTGAGAATCCAAGTCAA GAGCAGAGACTACTAGTTTACGGATCCACTTCTGAAGAAAACCCAGTTACCTCCAAAGTG AGTCTTTTGTCTGCGAAGCCTGAACAGAAGGACGATGCATCTGTAATCGATGTTCTTCTC AATCGCAGGAACAACCCAGAAGCTGCTCTTCGTTTCTATAATTGGGCTAGACCATGGCGT GGAAGTTTTGAAGATGGTGACGTCTTCTGGGTACTCATTCATATTCTGGTCAGTTCTCCT GAGACCTATGGACGTGCAAGTGATTTGCTCATACGGTACGTTTCTACGAGCAATCCAACT CCAATGGCAAGTGTTTTGGTCAGTAAATTGGTGGATTCGGCGAAATCATTTGGGTTTGAA GTCAATTCACGAGCTTTTAATTACTTATTGAATGCTTATTCTAAAGATAGGCAAACGGAT CATGCGGTGGATATCGTCAACCAGATGTTGGAACTAGATGTGATTCCATTTTTTCCATAT GTGAATAGGACCTTGAGTGCTTTAGTTCAAAGGAATTCGTTAACTGAAGCTAAGGAACTC TACAGTAGGATGGTTGCCATTGGTGTTGATGGTGATAATGTAACAACGCAATTGTTAATG AGAGCTAGTTTGAGAGAAGAAAAGCCTGCGGAGGCTTTGGAGGTTTTAAGTAGAGCTATT GAGAGAGGAGCAGAACCGGATAGTTTACTGTATAGTCTTGCTGTTCAGGCTTGTTGCAAG ACGCTTGATTTGGCTATGGCTAATAGTTTATTGAGAGAGATGAAGGAGAAGAAGTTGTGT GTCCCGTCGCAGGAAACTTATACTTCTGTGATTTTGGCTTCTGTGAAGCAAGGTAATATG GATGATGCAATTAGATTGAAGGATGAGATGTTGAGTGATGGGATATCGATGAATGTAGTT GCTGCGACGAGTCTGATCACGGGACACTGCAAGAACAATGACTTGGTTAGTGCTTTGGTT TTGTTTGATAAGATGGAAAAGGAAGGCCCCTCTCCGAACAGCGTTACTTTTTCGGTTCTG ATAGAATGGTTTCGTAAGAACGGGGAAATGGAAAAGGCGCTTGAATTTTACAAGAAAATG GAAGTCTTAGGTCTTACTCCTTCTGTCTTTCATGTCCACACGATAATTCAAGGGTGGTTG AAAGGTCAGAAACATGAAGAGGCACTGAAACTCTTTGACGAGTCTTTTGAAACCGGTCTT GCAAACGTGTTTGTATGTAACACTATATTATCCTGGTTATGCAAGCAAGGTAAGACAGAC GAAGCTACAGAGTTATTAAGCAAGATGGAAAGTAGAGGTATTGGACCGAATGTAGTTTCT TACAATAACGTGATGCTTGGCCACTGCAGACAGAAAAACATGGACTTGGCTCGTATTGTT TTTTCAAATATACTGGAAAAGGGTCTAAAGCCGAATAACTACACGTATTCCATTCTGATT GATGGATGTTTCAGGAATCATGATGAACAAAACGCTTTGGAAGTCGTCAATCATATGACT TCTTCCAATATTGAAGTCAACGGGGTTGTATACCAAACAATTATCAATGGTTTATGCAAA GTTGGTCAGACATCCAAAGCAAGAGAATTGTTGGCAAATATGATCGAAGAAAAACGGTTA TGTGTTAGTTGCATGAGTTACAATAGCATTATAGATGGATTTTTCAAAGAGGGTGAAATG GATTCTGCGGTTGCAGCATACGAAGAGATGTGTGGCAATGGTATTTCTCCAAACGTCATA ACTTATACCAGCTTGATGAATGGGTTATGCAAAAATAACAGAATGGATCAAGCATTGGAA ATGAGAGACGAAATGAAGAACAAAGGTGTCAAACTCGATATTCCAGCCTATGGTGCTCTT ATCGATGGGTTCTGCAAAAGGAGTAACATGGAAAGCGCATCTGCTCTGTTCTCTGAACTC CTTGAAGAAGGATTGAATCCAAGCCAACCTATATACAACAGCTTGATTTCTGGATTTCGT AATCTGGGAAACATGGTAGCAGCCCTTGATTTGTACAAGAAAATGTTGAAAGACGGTCTA CGATGTGATCTGGGTACATATACAACACTGATTGATGGATTGTTGAAAGATGGAAATTTG ATCCTGGCCTCTGAGTTGTACACAGAAATGCAGGCGGTGGGTCTTGTCCCTGATGAAATC ATTTACACAGTAATTGTAAACGGTCTTAGCAAGAAGGGGCAGTTTGTAAAAGTGGTTAAG ATGTTTGAGGAGATGAAGAAGAATAATGTCACTCCGAATGTCCTTATCTACAACGCGGTG ATTGCCGGACATTATAGAGAAGGAAATCTCGATGAGGCTTTTAGACTTCACGATGAGATG CTTGACAAGGGTATTTTACCCGATGGTGCTACATTTGATATTCTAGTTAGTGGGCAAGTC GGAAACCTCCAACCTGTACGTGCAGCAAGTTTGTAG

Peptide Sequence

PEP ID	AT3G54980.1
PEP Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr3:20370293-20372848 FORWARD LENGTH=851 \| 201606
Sequence	MRSLLVFRKIPSRIRLRNLRNNKPFCSQSQFPKESENPSQEQRLLVYGSTSEENPVTSKV SLLSAKPEQKDDASVIDVLLNRRNNPEAALRFYNWARPWRGSFEDGDVFWVLIHILVSSP ETYGRASDLLIRYVSTSNPTPMASVLVSKLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTD HAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLM RASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLC VPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALV LFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWL KGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVS YNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMT SSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEM DSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGAL IDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGL RCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVK MFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQV GNLQPVRAASL

Transcript Sequence

Transcript ID	AT3G54980.1
Transcript Infomation	\| Pentatricopeptide repeat (PPR) superfamily protein \| Chr3:20370205-20373074 FORWARD LENGTH=2870 \| 201606
Sequence	TATCTTCGGGATTTCAAGTTGTCTCTTTTATTTATTTCTCCGATCATCTTTTCTCTGCTG AAGATAGTTGAGAGAAGAACCTCGAAAGATGAGATCTTTATTGGTTTTTAGAAAAATCCC TTCACGGATTCGTCTTCGTAACTTGAGAAACAATAAACCCTTTTGTTCACAGTCTCAGTT TCCCAAAGAATCTGAGAATCCAAGTCAAGAGCAGAGACTACTAGTTTACGGATCCACTTC TGAAGAAAACCCAGTTACCTCCAAAGTGAGTCTTTTGTCTGCGAAGCCTGAACAGAAGGA CGATGCATCTGTAATCGATGTTCTTCTCAATCGCAGGAACAACCCAGAAGCTGCTCTTCG TTTCTATAATTGGGCTAGACCATGGCGTGGAAGTTTTGAAGATGGTGACGTCTTCTGGGT ACTCATTCATATTCTGGTCAGTTCTCCTGAGACCTATGGACGTGCAAGTGATTTGCTCAT ACGGTACGTTTCTACGAGCAATCCAACTCCAATGGCAAGTGTTTTGGTCAGTAAATTGGT GGATTCGGCGAAATCATTTGGGTTTGAAGTCAATTCACGAGCTTTTAATTACTTATTGAA TGCTTATTCTAAAGATAGGCAAACGGATCATGCGGTGGATATCGTCAACCAGATGTTGGA ACTAGATGTGATTCCATTTTTTCCATATGTGAATAGGACCTTGAGTGCTTTAGTTCAAAG GAATTCGTTAACTGAAGCTAAGGAACTCTACAGTAGGATGGTTGCCATTGGTGTTGATGG TGATAATGTAACAACGCAATTGTTAATGAGAGCTAGTTTGAGAGAAGAAAAGCCTGCGGA GGCTTTGGAGGTTTTAAGTAGAGCTATTGAGAGAGGAGCAGAACCGGATAGTTTACTGTA TAGTCTTGCTGTTCAGGCTTGTTGCAAGACGCTTGATTTGGCTATGGCTAATAGTTTATT GAGAGAGATGAAGGAGAAGAAGTTGTGTGTCCCGTCGCAGGAAACTTATACTTCTGTGAT TTTGGCTTCTGTGAAGCAAGGTAATATGGATGATGCAATTAGATTGAAGGATGAGATGTT GAGTGATGGGATATCGATGAATGTAGTTGCTGCGACGAGTCTGATCACGGGACACTGCAA GAACAATGACTTGGTTAGTGCTTTGGTTTTGTTTGATAAGATGGAAAAGGAAGGCCCCTC TCCGAACAGCGTTACTTTTTCGGTTCTGATAGAATGGTTTCGTAAGAACGGGGAAATGGA AAAGGCGCTTGAATTTTACAAGAAAATGGAAGTCTTAGGTCTTACTCCTTCTGTCTTTCA TGTCCACACGATAATTCAAGGGTGGTTGAAAGGTCAGAAACATGAAGAGGCACTGAAACT CTTTGACGAGTCTTTTGAAACCGGTCTTGCAAACGTGTTTGTATGTAACACTATATTATC CTGGTTATGCAAGCAAGGTAAGACAGACGAAGCTACAGAGTTATTAAGCAAGATGGAAAG TAGAGGTATTGGACCGAATGTAGTTTCTTACAATAACGTGATGCTTGGCCACTGCAGACA GAAAAACATGGACTTGGCTCGTATTGTTTTTTCAAATATACTGGAAAAGGGTCTAAAGCC GAATAACTACACGTATTCCATTCTGATTGATGGATGTTTCAGGAATCATGATGAACAAAA CGCTTTGGAAGTCGTCAATCATATGACTTCTTCCAATATTGAAGTCAACGGGGTTGTATA CCAAACAATTATCAATGGTTTATGCAAAGTTGGTCAGACATCCAAAGCAAGAGAATTGTT GGCAAATATGATCGAAGAAAAACGGTTATGTGTTAGTTGCATGAGTTACAATAGCATTAT AGATGGATTTTTCAAAGAGGGTGAAATGGATTCTGCGGTTGCAGCATACGAAGAGATGTG TGGCAATGGTATTTCTCCAAACGTCATAACTTATACCAGCTTGATGAATGGGTTATGCAA AAATAACAGAATGGATCAAGCATTGGAAATGAGAGACGAAATGAAGAACAAAGGTGTCAA ACTCGATATTCCAGCCTATGGTGCTCTTATCGATGGGTTCTGCAAAAGGAGTAACATGGA AAGCGCATCTGCTCTGTTCTCTGAACTCCTTGAAGAAGGATTGAATCCAAGCCAACCTAT ATACAACAGCTTGATTTCTGGATTTCGTAATCTGGGAAACATGGTAGCAGCCCTTGATTT GTACAAGAAAATGTTGAAAGACGGTCTACGATGTGATCTGGGTACATATACAACACTGAT TGATGGATTGTTGAAAGATGGAAATTTGATCCTGGCCTCTGAGTTGTACACAGAAATGCA GGCGGTGGGTCTTGTCCCTGATGAAATCATTTACACAGTAATTGTAAACGGTCTTAGCAA GAAGGGGCAGTTTGTAAAAGTGGTTAAGATGTTTGAGGAGATGAAGAAGAATAATGTCAC TCCGAATGTCCTTATCTACAACGCGGTGATTGCCGGACATTATAGAGAAGGAAATCTCGA TGAGGCTTTTAGACTTCACGATGAGATGCTTGACAAGGGTATTTTACCCGATGGTGCTAC ATTTGATATTCTAGTTAGTGGGCAAGTCGGAAACCTCCAACCTGTACGTGCAGCAAGTTT GTAGTCTGCCAAAACCAGACCACATTATTGACTGATGACTTAGCTTTGGCTTTTCGTGAG ACCCCGATAATATGACTGCTTAAGGTGTGCACTTTTCATTTTGCACGGTTGTAGTATAAA TGTTGTTATTCATGAAAGAGGGAGACTCTATAGACTTTCTGTAAAGAAACTAAGAAGGGC CTTCTGTTTTTGTCAATTTTATAAAACATAGAACGAATTCAAACCAGAAT