Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT3G54200.1
CDS Infomation

| Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | Chr3:20065731-20066438 FORWARD LENGTH=708 | 201606
Sequence

ATGAGTGATTTTTCAATCAAACCCGATGATAAAAAGGAAGAGGAGAAGCCAGCAACAGCC
ATGTTACCACCACCCAAACCAAACGCTTCTTCCATGGAAACGCAATCTGCTAACACCGGA
ACCGCTAAAAAACTGCGGCGGAAACGCAACTGCAAAATCTGTATCTGTTTCACTATCCTT
CTCATTCTCCTAATCGCCATAGTTATCGTCATCTTAGCTTTCACTCTCTTCAAACCAAAA
CGCCCAACTACTACAATCGATTCCGTCACCGTTGATCGTCTCCAAGCTTCCGTCAATCCT
CTCCTTCTCAAAGTCCTCCTAAACCTAACGCTCAACGTCGATCTCTCTCTCAAAAACCCT
AACCGCATCGGGTTTAGCTACGATTCGTCGTCGGCGTTGTTGAATTACAGAGGCCAAGTG
ATCGGTGAAGCTCCTCTTCCGGCTAACCGAATCGCGGCGCGGAAAACGGTGCCGTTGAAT
ATAACGTTGACGCTAATGGCGGATCGGTTACTCTCTGAAACGCAGCTTTTATCTGACGTC
ATGGCTGGCGTCATTCCGCTTAATACTTTTGTTAAAGTCACTGGTAAAGTAACCGTTCTT
AAAATCTTTAAGATTAAAGTCCAATCGTCTTCTTCGTGTGATCTCAGTATCTCTGTTTCG
GATCGTAATGTTACGAGTCAACACTGTAAGTATTCGACTAAGTTATAA

Peptide Sequence

PEP ID

AT3G54200.1
PEP Infomation

| Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | Chr3:20065731-20066438 FORWARD LENGTH=235 | 201606
Sequence

MSDFSIKPDDKKEEEKPATAMLPPPKPNASSMETQSANTGTAKKLRRKRNCKICICFTIL
LILLIAIVIVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNP
NRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDV
MAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCKYSTKL

Transcript Sequence

Transcript ID

AT3G54200.1
Transcript Infomation

| Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | Chr3:20065607-20066617 FORWARD LENGTH=1011 | 201606
Sequence

GTAATTAAAAACTGGTAACGAATCCGCGTACAAATAGTGGTCTCCTCCTTTATAGGATAA
ACCAAAACCCCTGAGAAACTCAACAGCGAGAGAACCACAAAGCGTAACAAAGAGAGTAAT
AACTATGAGTGATTTTTCAATCAAACCCGATGATAAAAAGGAAGAGGAGAAGCCAGCAAC
AGCCATGTTACCACCACCCAAACCAAACGCTTCTTCCATGGAAACGCAATCTGCTAACAC
CGGAACCGCTAAAAAACTGCGGCGGAAACGCAACTGCAAAATCTGTATCTGTTTCACTAT
CCTTCTCATTCTCCTAATCGCCATAGTTATCGTCATCTTAGCTTTCACTCTCTTCAAACC
AAAACGCCCAACTACTACAATCGATTCCGTCACCGTTGATCGTCTCCAAGCTTCCGTCAA
TCCTCTCCTTCTCAAAGTCCTCCTAAACCTAACGCTCAACGTCGATCTCTCTCTCAAAAA
CCCTAACCGCATCGGGTTTAGCTACGATTCGTCGTCGGCGTTGTTGAATTACAGAGGCCA
AGTGATCGGTGAAGCTCCTCTTCCGGCTAACCGAATCGCGGCGCGGAAAACGGTGCCGTT
GAATATAACGTTGACGCTAATGGCGGATCGGTTACTCTCTGAAACGCAGCTTTTATCTGA
CGTCATGGCTGGCGTCATTCCGCTTAATACTTTTGTTAAAGTCACTGGTAAAGTAACCGT
TCTTAAAATCTTTAAGATTAAAGTCCAATCGTCTTCTTCGTGTGATCTCAGTATCTCTGT
TTCGGATCGTAATGTTACGAGTCAACACTGTAAGTATTCGACTAAGTTATAATCAGATCT
GTAGATTCTACCACACTTTGTTCTTGTTTTGTTTTTTGGTATTTGAATTGGTTTGTATTT
AATCTCTATGTATGTTTTATTTACTTTAATGAACAGAGATTTGATTTTGTTCTTTTTCGT
CTTAAAATCTTTTTGAGATAATCATAATTGATTCAACAAAATTAGTAAAAC